[Swift-devel] recent karajan changes causing trouble

[Veronika Nefedova]

yep, I "touched" them both.

I put the MoDyn-1.* files also in ~nefedova on terminable.  
MolDyn-1.dtm ran successfully today.

Nika

On Jul 5, 2007, at 2:39 PM, Ben Clifford wrote:

> did you touch both the 1 molecule and 244 moleule .swift files to  
> cause
> recompilation?
>
> also, do you have the 1-molecule .swift, .xml and .kml files around?
>
> On Thu, 5 Jul 2007, Veronika Nefedova wrote:
>
>> my workflow doesn't work with recent changes. It worked fine for 1  
>> molecule,
>> but fails for 244 (right after compilation step, before submitting  
>> it to the
>> grid). These are the errors:
>>
>> 2007-07-05 13:37:51,294 DEBUG VDL2ExecutionContext Missing  
>> argument s11 for
>> sys:element(out1, out2, out3, out4, in1, in2, in3, in4, in5, in6,  
>> in7, in8,
>> s1, s2, s3, s4, s5, s6, s7, s8, s9, s10, s11)
>> Missing argument s11 for sys:element(out1, out2, out3, out4, in1,  
>> in2, in3,
>> in4, in5, in6, in7, in8, s1, s2, s3, s4, s5, s6, s7, s8, s9, s10,  
>> s11)
>>        CHARMM3 @ MolDyn-244.kml, line: 209
>>        vdl:mains @ MolDyn-244.kml, line: 583910
>>
>>        at
>> org.globus.cog.karajan.workflow.nodes.user.UserDefinedElement.prepare 
>> InstanceArguments(UserDefinedElement.java:196)
>>        at
>> org.globus.cog.karajan.workflow.nodes.user.UserDefinedElement.startBo 
>> dy(UserDefinedElement.java:170)
>>        at
>> org.globus.cog.karajan.workflow.nodes.user.SequentialImplicitExecutio 
>> nUDE.startBody(SequentialImplicitExecutionUDE.java:55)
>>        at
>> org.globus.cog.karajan.workflow.nodes.user.SequentialImplicitExecutio 
>> nUDE.childCompleted(SequentialImplicitExecutionUDE.java:82)
>>        at
>> org.globus.cog.karajan.workflow.nodes.Sequential.notificationEvent 
>> (Sequential.java:33)
>>        at
>> org.globus.cog.karajan.workflow.nodes.FlowNode.event(FlowNode.java: 
>> 334)
>>        at
>> org.globus.cog.karajan.workflow.events.EventBus.send(EventBus.java: 
>> 123)
>>        at
>> org.globus.cog.karajan.workflow.events.EventBus.sendHooked 
>> (EventBus.java:97)
>>        at
>> org.globus.cog.karajan.workflow.nodes.FlowNode.fireNotificationEvent( 
>> FlowNode.java:172)
>>        at
>> org.globus.cog.karajan.workflow.nodes.FlowNode.complete 
>> (FlowNode.java:298)
>>        at
>> org.globus.cog.karajan.workflow.nodes.FlowContainer.post 
>> (FlowContainer.java:58)
>>        at
>> org.globus.cog.karajan.workflow.nodes.AbstractSequentialWithArguments 
>> .childCompleted(AbstractSequentialWithArguments.java:192)
>>        at
>> org.globus.cog.karajan.workflow.nodes.Sequential.notificationEvent 
>> (Sequential.java:33)
>>        at
>> org.globus.cog.karajan.workflow.nodes.FlowNode.event(FlowNode.java: 
>> 334)
>>        at
>> org.globus.cog.karajan.workflow.events.EventBus.send(EventBus.java: 
>> 123)
>>        at
>> org.globus.cog.karajan.workflow.events.EventBus.sendHooked 
>> (EventBus.java:97)
>>        at
>> org.globus.cog.karajan.workflow.nodes.FlowNode.fireNotificationEvent( 
>> FlowNode.java:172)
>>        at
>> org.globus.cog.karajan.workflow.nodes.FlowNode.complete 
>> (FlowNode.java:298)
>>        at
>> org.globus.cog.karajan.workflow.nodes.FlowContainer.post 
>> (FlowContainer.java:58)
>>        at
>> org.globus.cog.karajan.workflow.nodes.Parallel.notificationEvent 
>> (Parallel.java:90)
>>        at
>> org.globus.cog.karajan.workflow.nodes.FlowNode.event(FlowNode.java: 
>> 334)
>> <snip>
>>
>> a complete log is on terminable in ~nefedova/MolDyn-244- 
>> zvhy3me4scm61.log
>> the MolDyn-244.* files are also there. Please note that this is  
>> exactly the
>> same file (dtm) that worked before.
>>
>> Nika
>>
>>
>> On Jul 2, 2007, at 9:23 PM, Mihael Hategan wrote:
>>
>>> Yup. Try now.
>>>
>>> On Tue, 2007-07-03 at 06:38 +0530, Ben Clifford wrote:
>>>> I get the below when I try to run a hello world workflow
>>>> (examples/tutorial/q1.swift).
>>>>
>>>> I think Nika also saw something that looks similar, with a  
>>>> different
>>>> workflow.
>>>>
>>>> This is with cog r1655.
>>>>
>>>> I reverted my checkout to cog r1650 (svn merge -r1655:1650 .)  
>>>> and hello
>>>> world runs ok (r1650 being before the most recent set of cog  
>>>> commits).
>>>>
>>>>
>>>> $ swift -debug q1.swift
>>>> Recompilation suppressed.
>>>>
>>>> null
>>>>        kernel:cache @ sys.xml, line: 3
>>>> Caused by: java.lang.UnsupportedOperationException
>>>>        at java.util.AbstractMap.put(AbstractMap.java:228)
>>>>        at
>>>> org.globus.cog.karajan.workflow.nodes.CacheNode.getTrackingArgument 
>>>> s(CacheNode.java:153)
>>>>        at
>>>> org.globus.cog.karajan.workflow.nodes.CacheNode.post 
>>>> (CacheNode.java:77)
>>>>        at
>>>> org.globus.cog.karajan.workflow.nodes.AbstractSequentialWithArgumen 
>>>> ts.childCompleted(AbstractSequentialWithArguments.java:192)
>>>>        at
>>>> org.globus.cog.karajan.workflow.nodes.PartialArgumentsContainer.non 
>>>> ArgChildCompleted(PartialArgumentsContainer.java:90)
>>>>        at
>>>> org.globus.cog.karajan.workflow.nodes.PartialArgumentsContainer.chi 
>>>> ldCompleted(PartialArgumentsContainer.java:85)
>>>>        at
>>>> org.globus.cog.karajan.workflow.nodes.Sequential.notificationEvent( 
>>>> Sequential.java:33)
>>>>        at
>>>> org.globus.cog.karajan.workflow.nodes.CacheNode.notificationEvent 
>>>> (CacheNode.java:111)
>>>>        at
>>>> org.globus.cog.karajan.workflow.nodes.FlowNode.event 
>>>> (FlowNode.java:334)
>>>>        at
>>>> org.globus.cog.karajan.workflow.events.EventBus.send 
>>>> (EventBus.java:123)
>>>>        at
>>>> org.globus.cog.karajan.workflow.events.EventBus.sendHooked 
>>>> (EventBus.java:97)
>>>>        at
>>>> org.globus.cog.karajan.workflow.nodes.FlowNode.fireNotificationEven 
>>>> t(FlowNode.java:172)
>>>>        at
>>>> org.globus.cog.karajan.workflow.nodes.FlowNode.complete 
>>>> (FlowNode.java:298)
>>>>        at
>>>> org.globus.cog.karajan.workflow.nodes.FlowContainer.post 
>>>> (FlowContainer.java:58)
>>>>        at
>>>> org.globus.cog.karajan.workflow.nodes.Namespace.post 
>>>> (Namespace.java:40)
>>>>        at
>>>> org.globus.cog.karajan.workflow.nodes.AbstractSequentialWithArgumen 
>>>> ts.childCompleted(AbstractSequentialWithArguments.java:192)
>>>>        at
>>>> org.globus.cog.karajan.workflow.nodes.PartialArgumentsContainer.non 
>>>> ArgChildCompleted(PartialArgumentsContainer.java:90)
>>>>
>>>>
>>>
>>> _______________________________________________
>>> Swift-devel mailing list
>>> Swift-devel at ci.uchicago.edu
>>> http://mail.ci.uchicago.edu/mailman/listinfo/swift-devel
>>>
>>
>