[Swift-devel] recent karajan changes causing trouble

[Veronika Nefedova]

my workflow doesn't work with recent changes. It worked fine for 1  
molecule, but fails for 244 (right after compilation step, before  
submitting it to the grid). These are the errors:

2007-07-05 13:37:51,294 DEBUG VDL2ExecutionContext Missing argument  
s11 for sys:element(out1, out2, out3, out4, in1, in2, in3, in4, in5,  
in6, in7, in8, s1, s2, s3, s4, s5, s6, s7, s8, s9, s10, s11)
Missing argument s11 for sys:element(out1, out2, out3, out4, in1,  
in2, in3, in4, in5, in6, in7, in8, s1, s2, s3, s4, s5, s6, s7, s8,  
s9, s10, s11)
         CHARMM3 @ MolDyn-244.kml, line: 209
         vdl:mains @ MolDyn-244.kml, line: 583910

         at  
org.globus.cog.karajan.workflow.nodes.user.UserDefinedElement.prepareIns 
tanceArguments(UserDefinedElement.java:196)
         at  
org.globus.cog.karajan.workflow.nodes.user.UserDefinedElement.startBody( 
UserDefinedElement.java:170)
         at  
org.globus.cog.karajan.workflow.nodes.user.SequentialImplicitExecutionUD 
E.startBody(SequentialImplicitExecutionUDE.java:55)
         at  
org.globus.cog.karajan.workflow.nodes.user.SequentialImplicitExecutionUD 
E.childCompleted(SequentialImplicitExecutionUDE.java:82)
         at  
org.globus.cog.karajan.workflow.nodes.Sequential.notificationEvent 
(Sequential.java:33)
         at org.globus.cog.karajan.workflow.nodes.FlowNode.event 
(FlowNode.java:334)
         at org.globus.cog.karajan.workflow.events.EventBus.send 
(EventBus.java:123)
         at org.globus.cog.karajan.workflow.events.EventBus.sendHooked 
(EventBus.java:97)
         at  
org.globus.cog.karajan.workflow.nodes.FlowNode.fireNotificationEvent 
(FlowNode.java:172)
         at org.globus.cog.karajan.workflow.nodes.FlowNode.complete 
(FlowNode.java:298)
         at org.globus.cog.karajan.workflow.nodes.FlowContainer.post 
(FlowContainer.java:58)
         at  
org.globus.cog.karajan.workflow.nodes.AbstractSequentialWithArguments.ch 
ildCompleted(AbstractSequentialWithArguments.java:192)
         at  
org.globus.cog.karajan.workflow.nodes.Sequential.notificationEvent 
(Sequential.java:33)
         at org.globus.cog.karajan.workflow.nodes.FlowNode.event 
(FlowNode.java:334)
         at org.globus.cog.karajan.workflow.events.EventBus.send 
(EventBus.java:123)
         at org.globus.cog.karajan.workflow.events.EventBus.sendHooked 
(EventBus.java:97)
         at  
org.globus.cog.karajan.workflow.nodes.FlowNode.fireNotificationEvent 
(FlowNode.java:172)
         at org.globus.cog.karajan.workflow.nodes.FlowNode.complete 
(FlowNode.java:298)
         at org.globus.cog.karajan.workflow.nodes.FlowContainer.post 
(FlowContainer.java:58)
         at  
org.globus.cog.karajan.workflow.nodes.Parallel.notificationEvent 
(Parallel.java:90)
         at org.globus.cog.karajan.workflow.nodes.FlowNode.event 
(FlowNode.java:334)
<snip>

a complete log is on terminable in ~nefedova/MolDyn-244- 
zvhy3me4scm61.log
the MolDyn-244.* files are also there. Please note that this is  
exactly the same file (dtm) that worked before.

Nika


On Jul 2, 2007, at 9:23 PM, Mihael Hategan wrote:

> Yup. Try now.
>
> On Tue, 2007-07-03 at 06:38 +0530, Ben Clifford wrote:
>> I get the below when I try to run a hello world workflow
>> (examples/tutorial/q1.swift).
>>
>> I think Nika also saw something that looks similar, with a different
>> workflow.
>>
>> This is with cog r1655.
>>
>> I reverted my checkout to cog r1650 (svn merge -r1655:1650 .) and  
>> hello
>> world runs ok (r1650 being before the most recent set of cog  
>> commits).
>>
>>
>> $ swift -debug q1.swift
>> Recompilation suppressed.
>>
>> null
>>         kernel:cache @ sys.xml, line: 3
>> Caused by: java.lang.UnsupportedOperationException
>>         at java.util.AbstractMap.put(AbstractMap.java:228)
>>         at
>> org.globus.cog.karajan.workflow.nodes.CacheNode.getTrackingArguments( 
>> CacheNode.java:153)
>>         at
>> org.globus.cog.karajan.workflow.nodes.CacheNode.post 
>> (CacheNode.java:77)
>>         at
>> org.globus.cog.karajan.workflow.nodes.AbstractSequentialWithArguments 
>> .childCompleted(AbstractSequentialWithArguments.java:192)
>>         at
>> org.globus.cog.karajan.workflow.nodes.PartialArgumentsContainer.nonAr 
>> gChildCompleted(PartialArgumentsContainer.java:90)
>>         at
>> org.globus.cog.karajan.workflow.nodes.PartialArgumentsContainer.child 
>> Completed(PartialArgumentsContainer.java:85)
>>         at
>> org.globus.cog.karajan.workflow.nodes.Sequential.notificationEvent 
>> (Sequential.java:33)
>>         at
>> org.globus.cog.karajan.workflow.nodes.CacheNode.notificationEvent 
>> (CacheNode.java:111)
>>         at
>> org.globus.cog.karajan.workflow.nodes.FlowNode.event(FlowNode.java: 
>> 334)
>>         at
>> org.globus.cog.karajan.workflow.events.EventBus.send(EventBus.java: 
>> 123)
>>         at
>> org.globus.cog.karajan.workflow.events.EventBus.sendHooked 
>> (EventBus.java:97)
>>         at
>> org.globus.cog.karajan.workflow.nodes.FlowNode.fireNotificationEvent( 
>> FlowNode.java:172)
>>         at
>> org.globus.cog.karajan.workflow.nodes.FlowNode.complete 
>> (FlowNode.java:298)
>>         at
>> org.globus.cog.karajan.workflow.nodes.FlowContainer.post 
>> (FlowContainer.java:58)
>>         at
>> org.globus.cog.karajan.workflow.nodes.Namespace.post 
>> (Namespace.java:40)
>>         at
>> org.globus.cog.karajan.workflow.nodes.AbstractSequentialWithArguments 
>> .childCompleted(AbstractSequentialWithArguments.java:192)
>>         at
>> org.globus.cog.karajan.workflow.nodes.PartialArgumentsContainer.nonAr 
>> gChildCompleted(PartialArgumentsContainer.java:90)
>>
>>
>
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