[petsc-users] Install PETSc with option `--with-shared-libraries=1` failed on MacOS
Pierre Jolivet
pierre at joliv.et
Sun Mar 17 07:58:58 CDT 2024
> On 17 Mar 2024, at 1:04 PM, Zongze Yang <yangzongze at gmail.com> wrote:
>
> Thank you for providing the instructions. I try the first option.
>
> Now, the error of the configuration is related to OpenBLAS.
> Add `--CFLAGS=-Wno-int-conversion` to configure command resolve this. Should this be reported to OpenBLAS? Or need to fix the configure in petsc?
I see our linux-opt-arm runner is using the additional flag '--download-openblas-make-options=TARGET=GENERIC', could you maybe try to add that as well?
I don’t think there is much to fix on our end, OpenBLAS has been very broken lately on arm (current version is 0.3.26 but we can’t update because there is a huge performance regression which makes the pipeline timeout).
Thanks,
Pierre
>
> The configure.log is attached. The errors are show below:
> ```
> src/lapack_wrappers.c:570:81: error: incompatible integer to pointer conversion passing 'blasint' (aka 'int') to parameter of type 'const blasint *' (aka 'const int *'); take the address with & [-Wint-conversion]
> RELAPACK_sgemmt(uplo, transA, transB, n, k, alpha, A, ldA, B, ldB, beta, C, info);
> ^~~~
> &
> src/../inc/relapack.h:74:216: note: passing argument to parameter here
> void RELAPACK_sgemmt(const char *, const char *, const char *, const blasint *, const blasint *, const float *, const float *, const blasint *, const float *, const blasint *, const float *, float *, const blasint *);
> ^
> src/lapack_wrappers.c:583:81: error: incompatible integer to pointer conversion passing 'blasint' (aka 'int') to parameter of type 'const blasint *' (aka 'const int *'); take the address with & [-Wint-conversion]
> RELAPACK_dgemmt(uplo, transA, transB, n, k, alpha, A, ldA, B, ldB, beta, C, info);
> ^~~~
> &
> src/../inc/relapack.h:75:221: note: passing argument to parameter here
> void RELAPACK_dgemmt(const char *, const char *, const char *, const blasint *, const blasint *, const double *, const double *, const blasint *, const double *, const blasint *, const double *, double *, const blasint *);
> ^
> src/lapack_wrappers.c:596:81: error: incompatible integer to pointer conversion passing 'blasint' (aka 'int') to parameter of type 'const blasint *' (aka 'const int *'); take the address with & [-Wint-conversion]
> RELAPACK_cgemmt(uplo, transA, transB, n, k, alpha, A, ldA, B, ldB, beta, C, info);
> ^~~~
> &
> src/../inc/relapack.h:76:216: note: passing argument to parameter here
> void RELAPACK_cgemmt(const char *, const char *, const char *, const blasint *, const blasint *, const float *, const float *, const blasint *, const float *, const blasint *, const float *, float *, const blasint *);
> ^
> src/lapack_wrappers.c:609:81: error: incompatible integer to pointer conversion passing 'blasint' (aka 'int') to parameter of type 'const blasint *' (aka 'const int *'); take the address with & [-Wint-conversion]
> RELAPACK_zgemmt(uplo, transA, transB, n, k, alpha, A, ldA, B, ldB, beta, C, info);
> ^~~~
> &
> src/../inc/relapack.h:77:221: note: passing argument to parameter here
> void RELAPACK_zgemmt(const char *, const char *, const char *, const blasint *, const blasint *, const double *, const double *, const blasint *, const double *, const blasint *, const double *, double *, const blasint *);
> ^
> 4 errors generated.
> ```
>
> Best wishes,
> Zongze
>
> <configure.log.tar.gz>
>
>> On 17 Mar 2024, at 18:48, Pierre Jolivet <pierre at joliv.et> wrote:
>>
>> You need this MR https://urldefense.us/v3/__https://gitlab.com/petsc/petsc/-/merge_requests/7365__;!!G_uCfscf7eWS!ZvwjMAU-lcsnHOD1DYr8ZDVvdFJXa8hvGZBO4pBGgAQUue7mdUWP4lTTAroHEIUV3yEADf1DJ7z-etn64PkQMw$
>> main has been broken for macOS since https://urldefense.us/v3/__https://gitlab.com/petsc/petsc/-/merge_requests/7341__;!!G_uCfscf7eWS!ZvwjMAU-lcsnHOD1DYr8ZDVvdFJXa8hvGZBO4pBGgAQUue7mdUWP4lTTAroHEIUV3yEADf1DJ7z-etlzwFFxow$ , so the alternative is to revert to the commit prior.
>> It should work either way.
>>
>> Thanks,
>> Pierre
>>
>>> On 17 Mar 2024, at 11:31 AM, Zongze Yang <yangzongze at gmail.com <mailto:yangzongze at gmail.com>> wrote:
>>>
>>>
>>> This Message Is From an External Sender
>>> This message came from outside your organization.
>>> Hi, PETSc Team,
>>>
>>> I am trying to install petsc with the following configuration
>>> ```
>>> ./configure \
>>> --download-bison \
>>> --download-mpich \
>>> --download-mpich-configure-arguments=--disable-opencl \
>>> --download-hwloc \
>>> --download-hwloc-configure-arguments=--disable-opencl \
>>> --download-openblas \
>>> --download-openblas-make-options="'USE_THREAD=0 USE_LOCKING=1 USE_OPENMP=0'" \
>>> --with-shared-libraries=1 \
>>> --with-fortran-bindings=0 \
>>> --with-zlib \
>>> LDFLAGS=-Wl,-ld_classic
>>> ```
>>>
>>> The log shows that
>>> ```
>>> Exhausted all shared linker guesses. Could not determine how to create a shared library!
>>> ```
>>>
>>> I recently updated the system and Xcode, as well as homebrew.
>>>
>>> The configure.log is attached.
>>>
>>> Thanks for your attention to this matter.
>>>
>>> Best wishes,
>>> Zongze
>>> <configure.log.tar.gz>
>
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