[petsc-users] Error running configure on HDF5 in PETSc-3.18.3

[Pierre Jolivet]

> On 6 Jan 2023, at 4:49 PM, Danyang Su <danyang.su at gmail.com> wrote:
> 
> Hi All,
>  
> I get ‘Error running configure on HDF5’ in PETSc-3.18.3 on MacOS, but no problem on Ubuntu. Attached is the configuration log file. 
>  
> ./configure --with-cc=gcc --with-cxx=g++ --with-fc=gfortran --download-mumps --download-scalapack --download-parmetis --download-metis --download-ptscotch --download-fblaslapack --download-mpich --download-hypre --download-superlu_dist --download-hdf5=yes --with-debugging=0 --download-cmake --with-hdf5-fortran-bindings
>  
> Any idea on this?

Could you try to reconfigure in a shell without conda being activated?
You have PATH=/Users/danyangsu/Soft/Anaconda3/bin:/Users/danyangsu/Soft/Anaconda3/condabin:[…] which typically results in a broken configuration.

Thanks,
Pierre

> Thanks,
>  
> Danyang

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