<html><head><meta http-equiv="content-type" content="text/html; charset=utf-8"></head><body style="overflow-wrap: break-word; -webkit-nbsp-mode: space; line-break: after-white-space;"><br><div><br><blockquote type="cite"><div>On 6 Jan 2023, at 4:49 PM, Danyang Su <danyang.su@gmail.com> wrote:</div><br class="Apple-interchange-newline"><div><meta charset="UTF-8"><div class="WordSection1" style="page: WordSection1; caret-color: rgb(0, 0, 0); font-family: Helvetica; font-size: 12px; font-style: normal; font-variant-caps: normal; font-weight: 400; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; text-decoration: none;"><div style="margin: 0cm; font-size: 12pt; font-family: Calibri, sans-serif;"><span lang="EN-US" style="font-size: 11pt;">Hi All,<o:p></o:p></span></div><div style="margin: 0cm; font-size: 12pt; font-family: Calibri, sans-serif;"><span lang="EN-US" style="font-size: 11pt;"><o:p> </o:p></span></div><div style="margin: 0cm; font-size: 12pt; font-family: Calibri, sans-serif;"><span lang="EN-US" style="font-size: 11pt;">I get ‘Error running configure on HDF5’ in PETSc-3.18.3 on MacOS, but no problem on Ubuntu. Attached is the configuration log file.<span class="Apple-converted-space"> </span><o:p></o:p></span></div><div style="margin: 0cm; font-size: 12pt; font-family: Calibri, sans-serif;"><span lang="EN-US" style="font-size: 11pt;"><o:p> </o:p></span></div><div style="margin: 0cm; font-size: 8.5pt; font-family: Menlo;"><span class="s1">./configure --with-cc=gcc --with-cxx=g++ --with-fc=gfortran --download-mumps --download-scalapack --download-parmetis --download-metis --download-ptscotch --download-fblaslapack --download-mpich --download-hypre --download-superlu_dist --download-hdf5=yes --with-debugging=0 --download-cmake --with-hdf5-fortran-bindings</span><o:p></o:p></div><div style="margin: 0cm; font-size: 12pt; font-family: Calibri, sans-serif;"><span lang="EN-US" style="font-size: 11pt;"><o:p> </o:p></span></div><div style="margin: 0cm; font-size: 12pt; font-family: Calibri, sans-serif;"><span lang="EN-US" style="font-size: 11pt;">Any idea on this?</span></div></div></div></blockquote><div><br></div><div>Could you try to reconfigure in a shell without conda being activated?</div><div>You have PATH=/Users/danyangsu/Soft/Anaconda3/bin:/Users/danyangsu/Soft/Anaconda3/condabin:[…] which typically results in a broken configuration.</div><div><br></div><div>Thanks,</div><div>Pierre</div><br><blockquote type="cite"><div class="WordSection1" style="page: WordSection1; caret-color: rgb(0, 0, 0); font-family: Helvetica; font-size: 12px; font-style: normal; font-variant-caps: normal; font-weight: 400; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; text-decoration: none;"><div style="margin: 0cm; font-size: 12pt; font-family: Calibri, sans-serif;"><span lang="EN-US" style="font-size: 11pt;">Thanks,<o:p></o:p></span></div><div style="margin: 0cm; font-size: 12pt; font-family: Calibri, sans-serif;"><span lang="EN-US" style="font-size: 11pt;"><o:p> </o:p></span></div><div style="margin: 0cm; font-size: 12pt; font-family: Calibri, sans-serif;"><span lang="EN-US" style="font-size: 11pt;">Danyang</span></div></div></blockquote></div><br></body></html>