[petsc-users] 回复： out of date warning when petscmpiexec.
Syvshc
syvshc at foxmail.com
Thu Dec 15 12:21:23 CST 2022
I got lots of build information,
and after "make -f gmakefile libs", the out of date warning of petscmpiexec was gone.
❯ petscmpiexec -n 1 ./e
Warning: ************** The executable ./e is out of date
e is about 1.000000000000000
rank 0 did 0 flops
BTW, if I want to know something of the "executable out of date" question,
should I send a new mail or I can just ask under these mails?
Thanks for your help sincerely.
Syvshc
------------------ 原始邮件 ------------------
发件人: "petsc-users" <balay at mcs.anl.gov>;
发送时间: 2022年12月16日(星期五) 凌晨2:11
收件人: "Syvshc"<syvshc at foxmail.com>;
抄送: "petsc-users"<petsc-users at mcs.anl.gov>;
主题: Re: [petsc-users] out of date warning when petscmpiexec.
> make -q -f gmakefile libs
> echo $?
> 1
So "make" does think the library is out-of-date. If up-to-date - you should see a '0' - not '1'. One more try:
what do you get for:
cd $PETSC_DIR
make -f gmakefile libs # i.e without -q
Satish
On Fri, 16 Dec 2022, Syvshc wrote:
> I still get this warning, I found that "make -q" command won't get any respond.
>
>
> Here is the whole output:
>
>
> ?7?9 cd $PETSC_DIR
> make -q -f gmakefile libs
> echo $?
> cd ~/git/p4pdes/c/ch1
> make -q e
> echo $?
> petscmpiexec -n 1 ./e
> make clean
> make e
> make -q e
> echo $?
> petscmpiexec -n 1 ./e
> 1
> 1
> Warning: ************** The PETSc libraries are out of date
> Warning: ************** The executable ./e is out of date
> e is about 1.000000000000000
> rank 0 did 0 flops
> mpicc -o e.o -c -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 -pedantic -std=c99 -I/home/syvshclily/git/petsc/petsc-latest/include -I/home/syvshclily/git/petsc/petsc-latest/arch-linux-c-debug/include `pwd`/e.c
> mpicc -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 -pedantic -std=c99 -o e e.o -Wl,-rpath,/home/syvshclily/git/petsc/petsc-latest/arch-linux-c-debug/lib -L/home/syvshclily/git/petsc/petsc-latest/arch-linux-c-debug/lib -Wl,-rpath,/home/syvshclily/git/petsc/petsc-latest/arch-linux-c-debug/lib -L/home/syvshclily/git/petsc/petsc-latest/arch-linux-c-debug/lib -Wl,-rpath,/usr/lib/gcc/x86_64-pc-linux-gnu/12.2.0 -L/usr/lib/gcc/x86_64-pc-linux-gnu/12.2.0 -lpetsc -lsuperlu_dist -llapack -lblas -lm -lX11 -lstdc++ -ldl -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lgfortran -lm -lgfortran -lm -lgcc_s -lquadmath -lstdc++ -ldl
> /usr/sbin/rm -f e.o
> 1
> Warning: ************** The PETSc libraries are out of date
> Warning: ************** The executable ./e is out of date
> e is about 1.000000000000000
> rank 0 did 0 flops
>
>
>
> Thanks for your reply.
>
>
> Syvshc
>
>
>
>
> ------------------ Original ------------------
> From: "petsc-users" <balay at mcs.anl.gov>;
> Date: Fri, Dec 16, 2022 01:40 AM
> To: "Syvshc"<syvshc at foxmail.com>;
> Cc: "petsc-users"<petsc-users at mcs.anl.gov>;
> Subject: Re: [petsc-users] out of date warning when petscmpiexec.
>
>
>
> That's strange. Do you still get this warning from petscmpiexec?
>
> Can you run these commands - and copy/paste the *complete* session from your terminal [for these commands and their output on terminal] ?
>
> >>>>>>
> cd $PETSC_DIR
> make -q -f gmakefile libs
> echo $?
> cd bueler/p4pdes
> make -q e
> echo $?
> petscmpiexec -n 1 ./e
> make clean
> make e
> make -q e
> echo $?
> petscmpiexec -n 1 ./e
> <<<<
>
> Alternatively you can just use mpiexec [ i.e not use petscmpiexec - its just a convenience wrapper over using correct mpiexec/valgrind].
>
> Satish
>
> On Fri, 16 Dec 2022, Syvshc wrote:
>
> > I run this command in the root dir of my petsc, and didn't get any response.
> >
> >
> >
> >
> > ------------------&nbsp;Original&nbsp;------------------
> > From: "petsc-users" <balay at mcs.anl.gov&gt;;
> > Date:&nbsp;Thu, Dec 15, 2022 10:19 PM
> > To:&nbsp;"Syvshc"<syvshc at foxmail.com&gt;;
> > Cc:&nbsp;"petsc-users"<petsc-users at mcs.anl.gov&gt;;
> > Subject:&nbsp;Re: [petsc-users] out of date warning when petscmpiexec.
> >
> >
> >
> > What do you get - if you invoke the following command in petsc source dir?
> >
> > make -q -f gmakefile libs
> >
> > [this is the test petscmpiexec is using to check if "libraries are out of date"]
> >
> > Satish
> >
> > On Thu, 15 Dec 2022, Syvshc wrote:
> >
> > &gt; I'm a beginner with petsc, and I'm reading&amp;nbsp;PETSc for Partial Differential Equations.&amp;nbsp;
> > &gt;
> > &gt; There is the newest release version (3.18.2) of PETSc's gitlab repo on my device, and openmpi in my system (/usr/sbin/).&amp;nbsp;
> > &gt;
> > &gt;
> > &gt; Here is the repo and what I tried to compiling.&amp;nbsp;p4pdes/e.c at master ?? bueler/p4pdes (github.com)
> > &gt;
> > &gt;
> > &gt; After "make e", I got an excutable file "e". "./e" or "mpiexec -n 4 ./e" can perfectly run.&amp;nbsp;
> > &gt;
> > &gt;
> > &gt; However when I use "petscmpiexec -n 4 ./e", I got some warnings:
> > &gt;
> > &gt;
> > &gt; Warning: ************** The PETSc libraries are out of date
> > &gt; Warning: ************** The executable ./e is out of date
> > &gt;
> > &gt;
> > &gt; What should I do to fix the warning?
> > &gt;
> > &gt;
> > &gt; Also this is the first time that I send to a mail-list, if there are some mistakes I made, please tell me.&amp;nbsp;
> > &gt;
> > &gt;
> > &gt; Kind regards,
> > &gt;
> > &gt;
> > &gt; Syvshc
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