[petsc-users] PETSc 3.15.3 compiling error

Wed Sep 1 14:19:48 CDT 2021

I'm not sure why you would want to do this  - instead of following the recommended installation instructions.

If your process works - thats great! you can use it!

But why start this e-mail thread?

Satish

On Wed, 1 Sep 2021, Sam Guo wrote:

> I believe I am using MUMPS since I have done following
> (1) defined  -DPETSC_HAVE_MUMPS,
> (2) compiles and links mat/impls/aij/mpi/mumps/mumps.c
> (3) link my pre-compiled MUMPS, and
> (4) specifies following PETSc options
>        checkError(EPSGetST(eps, &st));
>         checkError(STSetType(st, STSINVERT));
>         //if(useShellMatrix) checkError(STSetMatMode(st, ST_MATMODE_SHELL));
>         checkError(STGetKSP(st, &ksp));
>         checkError(KSPSetOperators(ksp, A, A));
>         checkError(KSPSetType(ksp, KSPPREONLY));
>         checkError(KSPGetPC(ksp, &pc));
>         checkError(MatSetOption(A, MAT_SPD, PETSC_TRUE));
>         checkError(PCSetType(pc, PCCHOLESKY));
>         checkError(PCFactorSetMatSolverType(pc, MATSOLVERMUMPS));
>         checkError(PCFactorSetUpMatSolverType(pc));
>         checkError(PetscOptionsSetValue(NULL, "-mat_mumps_icntl_13","1"));
> 
> Another evidence I am using MUMPS is that If I skip (1)-(3) above, I got
> the PETSc error saying that MUMPS is required.
> 
> On Wed, Sep 1, 2021 at 12:00 PM Satish Balay <balay at mcs.anl.gov> wrote:
> 
> > mumps is a fortran package - so best to specify fc. Any specific reason
> > for needing to force '--with-fc=0'?
> >
> > The attached configure.log is not using mumps.
> >
> > Satish
> >
> > On Wed, 1 Sep 2021, Sam Guo wrote:
> >
> > > fc should not be required since I link PETSc with pre-compiled MUMPS. In
> > > fact, --with-mumps-include --with-mumps-lib --with-mumps-serial should
> > not
> > > be required since my own CMake defines -DPETSC_HAVE_MUMPS and links my
> > > pre-compiled MUMPS.
> > >
> > > I am able to make it work using PETSc 3.11.3. Attached please find the
> > > cPETSc 3.11.3 onfigure.log PETSc.
> > >
> > > On Tue, Aug 31, 2021 at 4:47 PM Satish Balay <balay at mcs.anl.gov> wrote:
> > >
> > > >
> > > >
> > *******************************************************************************
> > > >          UNABLE to CONFIGURE with GIVEN OPTIONS    (see configure.log
> > for
> > > > details):
> > > >
> > > >
> > -------------------------------------------------------------------------------
> > > > Package mumps requested requires Fortran but compiler turned off.
> > > >
> > > >
> > *******************************************************************************
> > > >
> > > > i.e remove '--with-fc=0' and rerun configure.
> > > >
> > > > Satish
> > > >
> > > > On Tue, 31 Aug 2021, Sam Guo wrote:
> > > >
> > > > > Attached please find the latest configure.log.
> > > > >
> > > > > grep MUMPS_VERSION
> > > > >
> > > >
> > /u/cd4hhv/dev4/mumps/5.2.1-vanilla-parmetis3.2.0-openmp-cda-001/linux-x86_64-2.3.4/include/*.h
> > > > >
> > > >
> > /u/cd4hhv/dev4/mumps/5.2.1-vanilla-parmetis3.2.0-openmp-cda-001/linux-x86_64-2.3.4/include/cmumps_c.h:#ifndef
> > > > > MUMPS_VERSION
> > > > >
> > > >
> > /u/cd4hhv/dev4/mumps/5.2.1-vanilla-parmetis3.2.0-openmp-cda-001/linux-x86_64-2.3.4/include/cmumps_c.h:#define
> > > > > MUMPS_VERSION "5.2.1"
> > > > >
> > > >
> > /u/cd4hhv/dev4/mumps/5.2.1-vanilla-parmetis3.2.0-openmp-cda-001/linux-x86_64-2.3.4/include/cmumps_c.h:#ifndef
> > > > > MUMPS_VERSION_MAX_LEN
> > > > >
> > > >
> > /u/cd4hhv/dev4/mumps/5.2.1-vanilla-parmetis3.2.0-openmp-cda-001/linux-x86_64-2.3.4/include/cmumps_c.h:#define
> > > > > MUMPS_VERSION_MAX_LEN 30
> > > > >
> > > >
> > /u/cd4hhv/dev4/mumps/5.2.1-vanilla-parmetis3.2.0-openmp-cda-001/linux-x86_64-2.3.4/include/cmumps_c.h:
> > > > >    char version_number[MUMPS_VERSION_MAX_LEN + 1 + 1];
> > > > >
> > > >
> > /u/cd4hhv/dev4/mumps/5.2.1-vanilla-parmetis3.2.0-openmp-cda-001/linux-x86_64-2.3.4/include/dmumps_c.h:#ifndef
> > > > > MUMPS_VERSION
> > > > >
> > > >
> > /u/cd4hhv/dev4/mumps/5.2.1-vanilla-parmetis3.2.0-openmp-cda-001/linux-x86_64-2.3.4/include/dmumps_c.h:#define
> > > > > MUMPS_VERSION "5.2.1"
> > > > >
> > > >
> > /u/cd4hhv/dev4/mumps/5.2.1-vanilla-parmetis3.2.0-openmp-cda-001/linux-x86_64-2.3.4/include/dmumps_c.h:#ifndef
> > > > > MUMPS_VERSION_MAX_LEN
> > > > >
> > > >
> > /u/cd4hhv/dev4/mumps/5.2.1-vanilla-parmetis3.2.0-openmp-cda-001/linux-x86_64-2.3.4/include/dmumps_c.h:#define
> > > > > MUMPS_VERSION_MAX_LEN 30
> > > > >
> > > >
> > /u/cd4hhv/dev4/mumps/5.2.1-vanilla-parmetis3.2.0-openmp-cda-001/linux-x86_64-2.3.4/include/dmumps_c.h:
> > > > >    char version_number[MUMPS_VERSION_MAX_LEN + 1 + 1];
> > > > >
> > > >
> > /u/cd4hhv/dev4/mumps/5.2.1-vanilla-parmetis3.2.0-openmp-cda-001/linux-x86_64-2.3.4/include/smumps_c.h:#ifndef
> > > > > MUMPS_VERSION
> > > > >
> > > >
> > /u/cd4hhv/dev4/mumps/5.2.1-vanilla-parmetis3.2.0-openmp-cda-001/linux-x86_64-2.3.4/include/smumps_c.h:#define
> > > > > MUMPS_VERSION "5.2.1"
> > > > >
> > > >
> > /u/cd4hhv/dev4/mumps/5.2.1-vanilla-parmetis3.2.0-openmp-cda-001/linux-x86_64-2.3.4/include/smumps_c.h:#ifndef
> > > > > MUMPS_VERSION_MAX_LEN
> > > > >
> > > >
> > /u/cd4hhv/dev4/mumps/5.2.1-vanilla-parmetis3.2.0-openmp-cda-001/linux-x86_64-2.3.4/include/smumps_c.h:#define
> > > > > MUMPS_VERSION_MAX_LEN 30
> > > > >
> > > >
> > /u/cd4hhv/dev4/mumps/5.2.1-vanilla-parmetis3.2.0-openmp-cda-001/linux-x86_64-2.3.4/include/smumps_c.h:
> > > > >    char version_number[MUMPS_VERSION_MAX_LEN + 1 + 1];
> > > > >
> > > >
> > /u/cd4hhv/dev4/mumps/5.2.1-vanilla-parmetis3.2.0-openmp-cda-001/linux-x86_64-2.3.4/include/zmumps_c.h:#ifndef
> > > > > MUMPS_VERSION
> > > > >
> > > >
> > /u/cd4hhv/dev4/mumps/5.2.1-vanilla-parmetis3.2.0-openmp-cda-001/linux-x86_64-2.3.4/include/zmumps_c.h:#define
> > > > > MUMPS_VERSION "5.2.1"
> > > > >
> > > >
> > /u/cd4hhv/dev4/mumps/5.2.1-vanilla-parmetis3.2.0-openmp-cda-001/linux-x86_64-2.3.4/include/zmumps_c.h:#ifndef
> > > > > MUMPS_VERSION_MAX_LEN
> > > > >
> > > >
> > /u/cd4hhv/dev4/mumps/5.2.1-vanilla-parmetis3.2.0-openmp-cda-001/linux-x86_64-2.3.4/include/zmumps_c.h:#define
> > > > > MUMPS_VERSION_MAX_LEN 30
> > > > >
> > > >
> > /u/cd4hhv/dev4/mumps/5.2.1-vanilla-parmetis3.2.0-openmp-cda-001/linux-x86_64-2.3.4/include/zmumps_c.h:
> > > > >    char version_number[MUMPS_VERSION_MAX_LEN + 1 + 1];
> > > > >
> > > > > On Mon, Aug 30, 2021 at 9:47 PM Satish Balay <balay at mcs.anl.gov>
> > wrote:
> > > > >
> > > > > > Also - what do you have for:
> > > > > >
> > > > > > grep MUMPS_VERSION
> > > > > >
> > > >
> > /u/cd4hhv/dev4/mumps/5.2.1-vanilla-parmetis3.2.0-openmp-cda-001/linux-x86_64-2.3.4/include/*.h
> > > > > >
> > > > > > Satish
> > > > > >
> > > > > > On Mon, 30 Aug 2021, Satish Balay via petsc-users wrote:
> > > > > >
> > > > > > > please resend the logs
> > > > > > >
> > > > > > > Satish
> > > > > > >
> > > > > > > On Mon, 30 Aug 2021, Sam Guo wrote:
> > > > > > >
> > > > > > > > Same compiling error with --with-mumps-serial=1.
> > > > > > > >
> > > > > > > > On Mon, Aug 30, 2021 at 8:22 PM Satish Balay <
> > balay at mcs.anl.gov>
> > > > > > wrote:
> > > > > > > >
> > > > > > > > > Use the additional option: -with-mumps-serial
> > > > > > > > >
> > > > > > > > > Satish
> > > > > > > > >
> > > > > > > > > On Mon, 30 Aug 2021, Sam Guo wrote:
> > > > > > > > >
> > > > > > > > > > Attached please find the configure.log. I use my own
> > CMake. I
> > > > have
> > > > > > > > > > defined -DPETSC_HAVE_MUMPS. Thanks.
> > > > > > > > > >
> > > > > > > > > > On Mon, Aug 30, 2021 at 4:56 PM Sam Guo <
> > sam.guo at cd-adapco.com
> > > > >
> > > > > > wrote:
> > > > > > > > > >
> > > > > > > > > > > I use pre-installed
> > > > > > > > > > >
> > > > > > > > > > > On Mon, Aug 30, 2021 at 4:53 PM Satish Balay <
> > > > balay at mcs.anl.gov>
> > > > > > > > > wrote:
> > > > > > > > > > >
> > > > > > > > > > >>
> > > > > > > > > > >> Are you using --download-mumps or pre-installed mumps?
> > If
> > > > using
> > > > > > > > > > >> pre-installed - try --download-mumps.
> > > > > > > > > > >>
> > > > > > > > > > >> If you still have issues - send us configure.log and
> > > > make.log
> > > > > > from the
> > > > > > > > > > >> failed build.
> > > > > > > > > > >>
> > > > > > > > > > >> Satish
> > > > > > > > > > >>
> > > > > > > > > > >> On Mon, 30 Aug 2021, Sam Guo wrote:
> > > > > > > > > > >>
> > > > > > > > > > >> > Dear PETSc dev team,
> > > > > > > > > > >> >    I am compiling petsc 3.15.3 and got following
> > compiling
> > > > > > error
> > > > > > > > > > >> > petsc/src/mat/impls/aij/mpi/mumps/mumps.c:52:31:
> > error:
> > > > > > missing
> > > > > > > > > binary
> > > > > > > > > > >> > operator before token "("
> > > > > > > > > > >> >    52 | #if PETSC_PKG_MUMPS_VERSION_GE(5,3,0)
> > > > > > > > > > >> >    Any idea what I did wrong?
> > > > > > > > > > >> >
> > > > > > > > > > >> > Thanks,
> > > > > > > > > > >> > Sam
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