[petsc-users] PETSc 3.15.3 compiling error

Wed Sep 1 14:12:57 CDT 2021

I believe I am using MUMPS since I have done following
(1) defined  -DPETSC_HAVE_MUMPS,
(2) compiles and links mat/impls/aij/mpi/mumps/mumps.c
(3) link my pre-compiled MUMPS, and
(4) specifies following PETSc options
       checkError(EPSGetST(eps, &st));
        checkError(STSetType(st, STSINVERT));
        //if(useShellMatrix) checkError(STSetMatMode(st, ST_MATMODE_SHELL));
        checkError(STGetKSP(st, &ksp));
        checkError(KSPSetOperators(ksp, A, A));
        checkError(KSPSetType(ksp, KSPPREONLY));
        checkError(KSPGetPC(ksp, &pc));
        checkError(MatSetOption(A, MAT_SPD, PETSC_TRUE));
        checkError(PCSetType(pc, PCCHOLESKY));
        checkError(PCFactorSetMatSolverType(pc, MATSOLVERMUMPS));
        checkError(PCFactorSetUpMatSolverType(pc));
        checkError(PetscOptionsSetValue(NULL, "-mat_mumps_icntl_13","1"));

Another evidence I am using MUMPS is that If I skip (1)-(3) above, I got
the PETSc error saying that MUMPS is required.

On Wed, Sep 1, 2021 at 12:00 PM Satish Balay <balay at mcs.anl.gov> wrote:

> mumps is a fortran package - so best to specify fc. Any specific reason
> for needing to force '--with-fc=0'?
>
> The attached configure.log is not using mumps.
>
> Satish
>
> On Wed, 1 Sep 2021, Sam Guo wrote:
>
> > fc should not be required since I link PETSc with pre-compiled MUMPS. In
> > fact, --with-mumps-include --with-mumps-lib --with-mumps-serial should
> not
> > be required since my own CMake defines -DPETSC_HAVE_MUMPS and links my
> > pre-compiled MUMPS.
> >
> > I am able to make it work using PETSc 3.11.3. Attached please find the
> > cPETSc 3.11.3 onfigure.log PETSc.
> >
> > On Tue, Aug 31, 2021 at 4:47 PM Satish Balay <balay at mcs.anl.gov> wrote:
> >
> > >
> > >
> *******************************************************************************
> > >          UNABLE to CONFIGURE with GIVEN OPTIONS    (see configure.log
> for
> > > details):
> > >
> > >
> -------------------------------------------------------------------------------
> > > Package mumps requested requires Fortran but compiler turned off.
> > >
> > >
> *******************************************************************************
> > >
> > > i.e remove '--with-fc=0' and rerun configure.
> > >
> > > Satish
> > >
> > > On Tue, 31 Aug 2021, Sam Guo wrote:
> > >
> > > > Attached please find the latest configure.log.
> > > >
> > > > grep MUMPS_VERSION
> > > >
> > >
> /u/cd4hhv/dev4/mumps/5.2.1-vanilla-parmetis3.2.0-openmp-cda-001/linux-x86_64-2.3.4/include/*.h
> > > >
> > >
> /u/cd4hhv/dev4/mumps/5.2.1-vanilla-parmetis3.2.0-openmp-cda-001/linux-x86_64-2.3.4/include/cmumps_c.h:#ifndef
> > > > MUMPS_VERSION
> > > >
> > >
> /u/cd4hhv/dev4/mumps/5.2.1-vanilla-parmetis3.2.0-openmp-cda-001/linux-x86_64-2.3.4/include/cmumps_c.h:#define
> > > > MUMPS_VERSION "5.2.1"
> > > >
> > >
> /u/cd4hhv/dev4/mumps/5.2.1-vanilla-parmetis3.2.0-openmp-cda-001/linux-x86_64-2.3.4/include/cmumps_c.h:#ifndef
> > > > MUMPS_VERSION_MAX_LEN
> > > >
> > >
> /u/cd4hhv/dev4/mumps/5.2.1-vanilla-parmetis3.2.0-openmp-cda-001/linux-x86_64-2.3.4/include/cmumps_c.h:#define
> > > > MUMPS_VERSION_MAX_LEN 30
> > > >
> > >
> /u/cd4hhv/dev4/mumps/5.2.1-vanilla-parmetis3.2.0-openmp-cda-001/linux-x86_64-2.3.4/include/cmumps_c.h:
> > > >    char version_number[MUMPS_VERSION_MAX_LEN + 1 + 1];
> > > >
> > >
> /u/cd4hhv/dev4/mumps/5.2.1-vanilla-parmetis3.2.0-openmp-cda-001/linux-x86_64-2.3.4/include/dmumps_c.h:#ifndef
> > > > MUMPS_VERSION
> > > >
> > >
> /u/cd4hhv/dev4/mumps/5.2.1-vanilla-parmetis3.2.0-openmp-cda-001/linux-x86_64-2.3.4/include/dmumps_c.h:#define
> > > > MUMPS_VERSION "5.2.1"
> > > >
> > >
> /u/cd4hhv/dev4/mumps/5.2.1-vanilla-parmetis3.2.0-openmp-cda-001/linux-x86_64-2.3.4/include/dmumps_c.h:#ifndef
> > > > MUMPS_VERSION_MAX_LEN
> > > >
> > >
> /u/cd4hhv/dev4/mumps/5.2.1-vanilla-parmetis3.2.0-openmp-cda-001/linux-x86_64-2.3.4/include/dmumps_c.h:#define
> > > > MUMPS_VERSION_MAX_LEN 30
> > > >
> > >
> /u/cd4hhv/dev4/mumps/5.2.1-vanilla-parmetis3.2.0-openmp-cda-001/linux-x86_64-2.3.4/include/dmumps_c.h:
> > > >    char version_number[MUMPS_VERSION_MAX_LEN + 1 + 1];
> > > >
> > >
> /u/cd4hhv/dev4/mumps/5.2.1-vanilla-parmetis3.2.0-openmp-cda-001/linux-x86_64-2.3.4/include/smumps_c.h:#ifndef
> > > > MUMPS_VERSION
> > > >
> > >
> /u/cd4hhv/dev4/mumps/5.2.1-vanilla-parmetis3.2.0-openmp-cda-001/linux-x86_64-2.3.4/include/smumps_c.h:#define
> > > > MUMPS_VERSION "5.2.1"
> > > >
> > >
> /u/cd4hhv/dev4/mumps/5.2.1-vanilla-parmetis3.2.0-openmp-cda-001/linux-x86_64-2.3.4/include/smumps_c.h:#ifndef
> > > > MUMPS_VERSION_MAX_LEN
> > > >
> > >
> /u/cd4hhv/dev4/mumps/5.2.1-vanilla-parmetis3.2.0-openmp-cda-001/linux-x86_64-2.3.4/include/smumps_c.h:#define
> > > > MUMPS_VERSION_MAX_LEN 30
> > > >
> > >
> /u/cd4hhv/dev4/mumps/5.2.1-vanilla-parmetis3.2.0-openmp-cda-001/linux-x86_64-2.3.4/include/smumps_c.h:
> > > >    char version_number[MUMPS_VERSION_MAX_LEN + 1 + 1];
> > > >
> > >
> /u/cd4hhv/dev4/mumps/5.2.1-vanilla-parmetis3.2.0-openmp-cda-001/linux-x86_64-2.3.4/include/zmumps_c.h:#ifndef
> > > > MUMPS_VERSION
> > > >
> > >
> /u/cd4hhv/dev4/mumps/5.2.1-vanilla-parmetis3.2.0-openmp-cda-001/linux-x86_64-2.3.4/include/zmumps_c.h:#define
> > > > MUMPS_VERSION "5.2.1"
> > > >
> > >
> /u/cd4hhv/dev4/mumps/5.2.1-vanilla-parmetis3.2.0-openmp-cda-001/linux-x86_64-2.3.4/include/zmumps_c.h:#ifndef
> > > > MUMPS_VERSION_MAX_LEN
> > > >
> > >
> /u/cd4hhv/dev4/mumps/5.2.1-vanilla-parmetis3.2.0-openmp-cda-001/linux-x86_64-2.3.4/include/zmumps_c.h:#define
> > > > MUMPS_VERSION_MAX_LEN 30
> > > >
> > >
> /u/cd4hhv/dev4/mumps/5.2.1-vanilla-parmetis3.2.0-openmp-cda-001/linux-x86_64-2.3.4/include/zmumps_c.h:
> > > >    char version_number[MUMPS_VERSION_MAX_LEN + 1 + 1];
> > > >
> > > > On Mon, Aug 30, 2021 at 9:47 PM Satish Balay <balay at mcs.anl.gov>
> wrote:
> > > >
> > > > > Also - what do you have for:
> > > > >
> > > > > grep MUMPS_VERSION
> > > > >
> > >
> /u/cd4hhv/dev4/mumps/5.2.1-vanilla-parmetis3.2.0-openmp-cda-001/linux-x86_64-2.3.4/include/*.h
> > > > >
> > > > > Satish
> > > > >
> > > > > On Mon, 30 Aug 2021, Satish Balay via petsc-users wrote:
> > > > >
> > > > > > please resend the logs
> > > > > >
> > > > > > Satish
> > > > > >
> > > > > > On Mon, 30 Aug 2021, Sam Guo wrote:
> > > > > >
> > > > > > > Same compiling error with --with-mumps-serial=1.
> > > > > > >
> > > > > > > On Mon, Aug 30, 2021 at 8:22 PM Satish Balay <
> balay at mcs.anl.gov>
> > > > > wrote:
> > > > > > >
> > > > > > > > Use the additional option: -with-mumps-serial
> > > > > > > >
> > > > > > > > Satish
> > > > > > > >
> > > > > > > > On Mon, 30 Aug 2021, Sam Guo wrote:
> > > > > > > >
> > > > > > > > > Attached please find the configure.log. I use my own
> CMake. I
> > > have
> > > > > > > > > defined -DPETSC_HAVE_MUMPS. Thanks.
> > > > > > > > >
> > > > > > > > > On Mon, Aug 30, 2021 at 4:56 PM Sam Guo <
> sam.guo at cd-adapco.com
> > > >
> > > > > wrote:
> > > > > > > > >
> > > > > > > > > > I use pre-installed
> > > > > > > > > >
> > > > > > > > > > On Mon, Aug 30, 2021 at 4:53 PM Satish Balay <
> > > balay at mcs.anl.gov>
> > > > > > > > wrote:
> > > > > > > > > >
> > > > > > > > > >>
> > > > > > > > > >> Are you using --download-mumps or pre-installed mumps?
> If
> > > using
> > > > > > > > > >> pre-installed - try --download-mumps.
> > > > > > > > > >>
> > > > > > > > > >> If you still have issues - send us configure.log and
> > > make.log
> > > > > from the
> > > > > > > > > >> failed build.
> > > > > > > > > >>
> > > > > > > > > >> Satish
> > > > > > > > > >>
> > > > > > > > > >> On Mon, 30 Aug 2021, Sam Guo wrote:
> > > > > > > > > >>
> > > > > > > > > >> > Dear PETSc dev team,
> > > > > > > > > >> >    I am compiling petsc 3.15.3 and got following
> compiling
> > > > > error
> > > > > > > > > >> > petsc/src/mat/impls/aij/mpi/mumps/mumps.c:52:31:
> error:
> > > > > missing
> > > > > > > > binary
> > > > > > > > > >> > operator before token "("
> > > > > > > > > >> >    52 | #if PETSC_PKG_MUMPS_VERSION_GE(5,3,0)
> > > > > > > > > >> >    Any idea what I did wrong?
> > > > > > > > > >> >
> > > > > > > > > >> > Thanks,
> > > > > > > > > >> > Sam
> > > > > > > > > >> >
> > > > > > > > > >>
> > > > > > > > > >>
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> > > > > > > >
> > > > > > > >
> > > > > > >
> > > > > >
> > > > >
> > > > >
> > > >
> > >
> > >
> >
>
>
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