[petsc-users] download zlib error
Mark Adams
mfadams at lbl.gov
Wed Jul 7 10:04:17 CDT 2021
Thanks,
08:30 jczhang/fix-kokkos-includes= /gpfs/alpine/csc314/scratch/adams/petsc$
cd
/gpfs/alpine/csc314/scratch/adams/petsc/arch-spock-opt-cray-kokkos/externalpackages/zlib-1.2.11
&& CC="cc" CFLAGS="-fPIC -fstack-protector -Qunused-arguments -g -O0
-I${ROCM_PATH}/include"
prefix="/gpfs/alpine/csc314/scratch/adams/petsc/arch-spock-opt-cray-kokkos"
./configure && /usr/bin/gmake -j8 -l307.2 && /usr/bin/gmake install
Checking for shared library support...
Building shared library libz.so.1.2.11 with cc.
Checking for size_t... Yes.
Checking for off64_t... Yes.
Checking for fseeko... Yes.
Checking for strerror... No.
Checking for unistd.h... Yes.
Checking for stdarg.h... Yes.
Checking whether to use vs[n]printf() or s[n]printf()... using
vs[n]printf().
Checking for vsnprintf() in stdio.h... No.
WARNING: vsnprintf() not found, falling back to vsprintf(). zlib
can build but will be open to possible buffer-overflow security
vulnerabilities.
Checking for return value of vsprintf()... Yes.
Checking for attribute(visibility) support... Yes.
cc -fPIC -fstack-protector -Qunused-arguments -g -O0
-I/sw/spock/spack-envs/views/rocm-4.1.0/include -D_LARGEFILE64_SOURCE=1
-DNO_STRERROR -DNO_vsnprintf -DHAVE_HIDDEN -I. -c -o example.o
test/example.c
cc -fPIC -fstack-protector -Qunused-arguments -g -O0
-I/sw/spock/spack-envs/views/rocm-4.1.0/include -D_LARGEFILE64_SOURCE=1
-DNO_STRERROR -DNO_vsnprintf -DHAVE_HIDDEN -c -o adler32.o adler32.c
cc -fPIC -fstack-protector -Qunused-arguments -g -O0
-I/sw/spock/spack-envs/views/rocm-4.1.0/include -D_LARGEFILE64_SOURCE=1
-DNO_STRERROR -DNO_vsnprintf -DHAVE_HIDDEN -c -o crc32.o crc32.c
cc -fPIC -fstack-protector -Qunused-arguments -g -O0
-I/sw/spock/spack-envs/views/rocm-4.1.0/include -D_LARGEFILE64_SOURCE=1
-DNO_STRERROR -DNO_vsnprintf -DHAVE_HIDDEN -c -o deflate.o deflate.c
cc -fPIC -fstack-protector -Qunused-arguments -g -O0
-I/sw/spock/spack-envs/views/rocm-4.1.0/include -D_LARGEFILE64_SOURCE=1
-DNO_STRERROR -DNO_vsnprintf -DHAVE_HIDDEN -c -o infback.o infback.c
cc -fPIC -fstack-protector -Qunused-arguments -g -O0
-I/sw/spock/spack-envs/views/rocm-4.1.0/include -D_LARGEFILE64_SOURCE=1
-DNO_STRERROR -DNO_vsnprintf -DHAVE_HIDDEN -c -o inffast.o inffast.c
cc -fPIC -fstack-protector -Qunused-arguments -g -O0
-I/sw/spock/spack-envs/views/rocm-4.1.0/include -D_LARGEFILE64_SOURCE=1
-DNO_STRERROR -DNO_vsnprintf -DHAVE_HIDDEN -c -o inflate.o inflate.c
cc -fPIC -fstack-protector -Qunused-arguments -g -O0
-I/sw/spock/spack-envs/views/rocm-4.1.0/include -D_LARGEFILE64_SOURCE=1
-DNO_STRERROR -DNO_vsnprintf -DHAVE_HIDDEN -c -o inftrees.o inftrees.c
cc -fPIC -fstack-protector -Qunused-arguments -g -O0
-I/sw/spock/spack-envs/views/rocm-4.1.0/include -D_LARGEFILE64_SOURCE=1
-DNO_STRERROR -DNO_vsnprintf -DHAVE_HIDDEN -c -o trees.o trees.c
cc -fPIC -fstack-protector -Qunused-arguments -g -O0
-I/sw/spock/spack-envs/views/rocm-4.1.0/include -D_LARGEFILE64_SOURCE=1
-DNO_STRERROR -DNO_vsnprintf -DHAVE_HIDDEN -c -o zutil.o zutil.c
cc -fPIC -fstack-protector -Qunused-arguments -g -O0
-I/sw/spock/spack-envs/views/rocm-4.1.0/include -D_LARGEFILE64_SOURCE=1
-DNO_STRERROR -DNO_vsnprintf -DHAVE_HIDDEN -c -o compress.o compress.c
cc -fPIC -fstack-protector -Qunused-arguments -g -O0
-I/sw/spock/spack-envs/views/rocm-4.1.0/include -D_LARGEFILE64_SOURCE=1
-DNO_STRERROR -DNO_vsnprintf -DHAVE_HIDDEN -c -o uncompr.o uncompr.c
cc -fPIC -fstack-protector -Qunused-arguments -g -O0
-I/sw/spock/spack-envs/views/rocm-4.1.0/include -D_LARGEFILE64_SOURCE=1
-DNO_STRERROR -DNO_vsnprintf -DHAVE_HIDDEN -c -o gzclose.o gzclose.c
cc -fPIC -fstack-protector -Qunused-arguments -g -O0
-I/sw/spock/spack-envs/views/rocm-4.1.0/include -D_LARGEFILE64_SOURCE=1
-DNO_STRERROR -DNO_vsnprintf -DHAVE_HIDDEN -c -o gzlib.o gzlib.c
cc -fPIC -fstack-protector -Qunused-arguments -g -O0
-I/sw/spock/spack-envs/views/rocm-4.1.0/include -D_LARGEFILE64_SOURCE=1
-DNO_STRERROR -DNO_vsnprintf -DHAVE_HIDDEN -c -o gzread.o gzread.c
cc -fPIC -fstack-protector -Qunused-arguments -g -O0
-I/sw/spock/spack-envs/views/rocm-4.1.0/include -D_LARGEFILE64_SOURCE=1
-DNO_STRERROR -DNO_vsnprintf -DHAVE_HIDDEN -c -o gzwrite.o gzwrite.c
cc -fPIC -fstack-protector -Qunused-arguments -g -O0
-I/sw/spock/spack-envs/views/rocm-4.1.0/include -D_LARGEFILE64_SOURCE=1
-DNO_STRERROR -DNO_vsnprintf -DHAVE_HIDDEN -I. -c -o minigzip.o
test/minigzip.c
cc -fPIC -fstack-protector -Qunused-arguments -g -O0
-I/sw/spock/spack-envs/views/rocm-4.1.0/include -fPIC
-D_LARGEFILE64_SOURCE=1 -DNO_STRERROR -DNO_vsnprintf -DHAVE_HIDDEN -DPIC
-c -o objs/adler32.o adler32.c
cc -fPIC -fstack-protector -Qunused-arguments -g -O0
-I/sw/spock/spack-envs/views/rocm-4.1.0/include -fPIC
-D_LARGEFILE64_SOURCE=1 -DNO_STRERROR -DNO_vsnprintf -DHAVE_HIDDEN -DPIC
-c -o objs/crc32.o crc32.c
cc -fPIC -fstack-protector -Qunused-arguments -g -O0
-I/sw/spock/spack-envs/views/rocm-4.1.0/include -fPIC
-D_LARGEFILE64_SOURCE=1 -DNO_STRERROR -DNO_vsnprintf -DHAVE_HIDDEN -DPIC
-c -o objs/deflate.o deflate.c
cc -fPIC -fstack-protector -Qunused-arguments -g -O0
-I/sw/spock/spack-envs/views/rocm-4.1.0/include -fPIC
-D_LARGEFILE64_SOURCE=1 -DNO_STRERROR -DNO_vsnprintf -DHAVE_HIDDEN -DPIC
-c -o objs/infback.o infback.c
cc -fPIC -fstack-protector -Qunused-arguments -g -O0
-I/sw/spock/spack-envs/views/rocm-4.1.0/include -fPIC
-D_LARGEFILE64_SOURCE=1 -DNO_STRERROR -DNO_vsnprintf -DHAVE_HIDDEN -DPIC
-c -o objs/inffast.o inffast.c
cc -fPIC -fstack-protector -Qunused-arguments -g -O0
-I/sw/spock/spack-envs/views/rocm-4.1.0/include -fPIC
-D_LARGEFILE64_SOURCE=1 -DNO_STRERROR -DNO_vsnprintf -DHAVE_HIDDEN -DPIC
-c -o objs/inflate.o inflate.c
cc -fPIC -fstack-protector -Qunused-arguments -g -O0
-I/sw/spock/spack-envs/views/rocm-4.1.0/include -fPIC
-D_LARGEFILE64_SOURCE=1 -DNO_STRERROR -DNO_vsnprintf -DHAVE_HIDDEN -DPIC
-c -o objs/inftrees.o inftrees.c
cc -fPIC -fstack-protector -Qunused-arguments -g -O0
-I/sw/spock/spack-envs/views/rocm-4.1.0/include -fPIC
-D_LARGEFILE64_SOURCE=1 -DNO_STRERROR -DNO_vsnprintf -DHAVE_HIDDEN -DPIC
-c -o objs/trees.o trees.c
cc -fPIC -fstack-protector -Qunused-arguments -g -O0
-I/sw/spock/spack-envs/views/rocm-4.1.0/include -fPIC
-D_LARGEFILE64_SOURCE=1 -DNO_STRERROR -DNO_vsnprintf -DHAVE_HIDDEN -DPIC
-c -o objs/zutil.o zutil.c
cc -fPIC -fstack-protector -Qunused-arguments -g -O0
-I/sw/spock/spack-envs/views/rocm-4.1.0/include -fPIC
-D_LARGEFILE64_SOURCE=1 -DNO_STRERROR -DNO_vsnprintf -DHAVE_HIDDEN -DPIC
-c -o objs/compress.o compress.c
cc -fPIC -fstack-protector -Qunused-arguments -g -O0
-I/sw/spock/spack-envs/views/rocm-4.1.0/include -fPIC
-D_LARGEFILE64_SOURCE=1 -DNO_STRERROR -DNO_vsnprintf -DHAVE_HIDDEN -DPIC
-c -o objs/uncompr.o uncompr.c
cc -fPIC -fstack-protector -Qunused-arguments -g -O0
-I/sw/spock/spack-envs/views/rocm-4.1.0/include -fPIC
-D_LARGEFILE64_SOURCE=1 -DNO_STRERROR -DNO_vsnprintf -DHAVE_HIDDEN -DPIC
-c -o objs/gzclose.o gzclose.c
cc -fPIC -fstack-protector -Qunused-arguments -g -O0
-I/sw/spock/spack-envs/views/rocm-4.1.0/include -fPIC
-D_LARGEFILE64_SOURCE=1 -DNO_STRERROR -DNO_vsnprintf -DHAVE_HIDDEN -DPIC
-c -o objs/gzlib.o gzlib.c
cc -fPIC -fstack-protector -Qunused-arguments -g -O0
-I/sw/spock/spack-envs/views/rocm-4.1.0/include -fPIC
-D_LARGEFILE64_SOURCE=1 -DNO_STRERROR -DNO_vsnprintf -DHAVE_HIDDEN -DPIC
-c -o objs/gzread.o gzread.c
cc -fPIC -fstack-protector -Qunused-arguments -g -O0
-I/sw/spock/spack-envs/views/rocm-4.1.0/include -fPIC
-D_LARGEFILE64_SOURCE=1 -DNO_STRERROR -DNO_vsnprintf -DHAVE_HIDDEN -DPIC
-c -o objs/gzwrite.o gzwrite.c
cc -fPIC -fstack-protector -Qunused-arguments -g -O0
-I/sw/spock/spack-envs/views/rocm-4.1.0/include -D_LARGEFILE64_SOURCE=1
-DNO_STRERROR -DNO_vsnprintf -DHAVE_HIDDEN -I. -D_FILE_OFFSET_BITS=64 -c -o
example64.o test/example.c
cc -fPIC -fstack-protector -Qunused-arguments -g -O0
-I/sw/spock/spack-envs/views/rocm-4.1.0/include -D_LARGEFILE64_SOURCE=1
-DNO_STRERROR -DNO_vsnprintf -DHAVE_HIDDEN -I. -D_FILE_OFFSET_BITS=64 -c -o
minigzip64.o test/minigzip.c
ar rc libz.a adler32.o crc32.o deflate.o infback.o inffast.o inflate.o
inftrees.o trees.o zutil.o compress.o uncompr.o gzclose.o gzlib.o gzread.o
gzwrite.o
cc -fPIC -fstack-protector -Qunused-arguments -g -O0
-I/sw/spock/spack-envs/views/rocm-4.1.0/include -D_LARGEFILE64_SOURCE=1
-DNO_STRERROR -DNO_vsnprintf -DHAVE_HIDDEN -o example example.o -L. libz.a
cc -fPIC -fstack-protector -Qunused-arguments -g -O0
-I/sw/spock/spack-envs/views/rocm-4.1.0/include -D_LARGEFILE64_SOURCE=1
-DNO_STRERROR -DNO_vsnprintf -DHAVE_HIDDEN -o minigzip minigzip.o -L. libz.a
cc -shared -Wl,-soname,libz.so.1,--version-script,zlib.map -fPIC
-fstack-protector -Qunused-arguments -g -O0
-I/sw/spock/spack-envs/views/rocm-4.1.0/include -fPIC
-D_LARGEFILE64_SOURCE=1 -DNO_STRERROR -DNO_vsnprintf -DHAVE_HIDDEN -o
libz.so.1.2.11 adler32.lo crc32.lo deflate.lo infback.lo inffast.lo
inflate.lo inftrees.lo trees.lo zutil.lo compress.lo uncompr.lo gzclose.lo
gzlib.lo gzread.lo gzwrite.lo -lc
cc -fPIC -fstack-protector -Qunused-arguments -g -O0
-I/sw/spock/spack-envs/views/rocm-4.1.0/include -D_LARGEFILE64_SOURCE=1
-DNO_STRERROR -DNO_vsnprintf -DHAVE_HIDDEN -o minigzip64 minigzip64.o -L.
libz.a
cc -fPIC -fstack-protector -Qunused-arguments -g -O0
-I/sw/spock/spack-envs/views/rocm-4.1.0/include -D_LARGEFILE64_SOURCE=1
-DNO_STRERROR -DNO_vsnprintf -DHAVE_HIDDEN -o example64 example64.o -L.
libz.a
ld.lld: error: /opt/cray/pe/mpich/8.1.4/gtl/lib/libmpi_gtl_hsa.so:
undefined reference to hsa_amd_memory_pool_allocate
[--no-allow-shlib-undefined]
ld.lld: error: /opt/cray/pe/mpich/8.1.4/gtl/lib/libmpi_gtl_hsa.so:
undefined reference to hsa_amd_agent_iterate_memory_pools
[--no-allow-shlib-undefined]
ld.lld: error: /opt/cray/pe/mpich/8.1.4/gtl/lib/libmpi_gtl_hsa.so:
undefined reference to hsa_iterate_agents [--no-allow-shlib-undefined]
ld.lld: error: /opt/cray/pe/mpich/8.1.4/gtl/lib/libmpi_gtl_hsa.so:
undefined reference to hsa_signal_load_scacquire
[--no-allow-shlib-undefined]
ld.lldld.lld: : error: error:
/opt/cray/pe/mpich/8.1.4/gtl/lib/libmpi_gtl_hsa.so: undefined reference to
hsa_amd_memory_pool_allocate
[--no-allow-shlib-undefined]/opt/cray/pe/mpich/8.1.4/gtl/lib/libmpi_gtl_hsa.so:
undefined reference to hsa_amd_memory_unlock [--no-allow-shlib-undefined]
ld.lldld.lld: : error: error:
/opt/cray/pe/mpich/8.1.4/gtl/lib/libmpi_gtl_hsa.so: undefined reference to
hsa_amd_agent_iterate_memory_pools
[--no-allow-shlib-undefined]/opt/cray/pe/mpich/8.1.4/gtl/lib/libmpi_gtl_hsa.so:
undefined reference to hsa_signal_destroy [--no-allow-shlib-undefined]
ld.lldld.lld: : error: error:
/opt/cray/pe/mpich/8.1.4/gtl/lib/libmpi_gtl_hsa.so: undefined reference to
hsa_iterate_agents
[--no-allow-shlib-undefined]/opt/cray/pe/mpich/8.1.4/gtl/lib/libmpi_gtl_hsa.so:
undefined reference to hsa_amd_memory_pool_get_info
[--no-allow-shlib-undefined]
ld.lldld.lld: : error: error:
/opt/cray/pe/mpich/8.1.4/gtl/lib/libmpi_gtl_hsa.so: undefined reference to
hsa_signal_load_scacquire
[--no-allow-shlib-undefined]/opt/cray/pe/mpich/8.1.4/gtl/lib/libmpi_gtl_hsa.so:
undefined reference to hsa_amd_memory_lock [--no-allow-shlib-undefined]
ld.lldld.lld: : error: error:
/opt/cray/pe/mpich/8.1.4/gtl/lib/libmpi_gtl_hsa.so: undefined reference to
hsa_amd_memory_unlock
[--no-allow-shlib-undefined]/opt/cray/pe/mpich/8.1.4/gtl/lib/libmpi_gtl_hsa.so:
undefined reference to hsa_amd_memory_pool_free [--no-allow-shlib-undefined]
ld.lldld.lld: : error: error:
/opt/cray/pe/mpich/8.1.4/gtl/lib/libmpi_gtl_hsa.so: undefined reference to
hsa_signal_destroy
[--no-allow-shlib-undefined]/opt/cray/pe/mpich/8.1.4/gtl/lib/libmpi_gtl_hsa.so:
undefined reference to hsa_amd_agents_allow_access
[--no-allow-shlib-undefined]
ld.lld: error: /opt/cray/pe/mpich/8.1.4/gtl/lib/libmpi_gtl_hsa.so:
undefined reference to hsa_amd_memory_pool_get_info
[--no-allow-shlib-undefined]
ld.lld: error: /opt/cray/pe/mpich/8.1.4/gtl/lib/libmpi_gtl_hsa.so:
undefined reference to hsa_amd_memory_lock [--no-allow-shlib-undefined]
ld.lld: error: /opt/cray/pe/mpich/8.1.4/gtl/lib/libmpi_gtl_hsa.so:
undefined reference to hsa_amd_memory_pool_free [--no-allow-shlib-undefined]
ld.lld: error: /opt/cray/pe/mpich/8.1.4/gtl/lib/libmpi_gtl_hsa.so:
undefined reference to hsa_amd_agents_allow_access
[--no-allow-shlib-undefined]
clang-11: error: linker command failed with exit code 1 (use -v to see
invocation)
clang-11: error: linker command failed with exit code 1 (use -v to see
invocation)
gmake: *** [Makefile:292: minigzip] Error 1
gmake: *** Waiting for unfinished jobs....
gmake: *** [Makefile:289: example] Error 1
ld.lld: error: /opt/cray/pe/mpich/8.1.4/gtl/lib/libmpi_gtl_hsa.so:
undefined reference to hsa_amd_memory_pool_allocate
[--no-allow-shlib-undefined]
ld.lld: error: /opt/cray/pe/mpich/8.1.4/gtl/lib/libmpi_gtl_hsa.so:
undefined reference to hsa_amd_agent_iterate_memory_pools
[--no-allow-shlib-undefined]
ld.lld: error: /opt/cray/pe/mpich/8.1.4/gtl/lib/libmpi_gtl_hsa.so:
undefined reference to hsa_iterate_agents [--no-allow-shlib-undefined]
ld.lld: error: /opt/cray/pe/mpich/8.1.4/gtl/lib/libmpi_gtl_hsa.so:
undefined reference to hsa_signal_load_scacquire
[--no-allow-shlib-undefined]
ld.lld: error: /opt/cray/pe/mpich/8.1.4/gtl/lib/libmpi_gtl_hsa.so:
undefined reference to hsa_amd_memory_unlock [--no-allow-shlib-undefined]
ld.lld: error: /opt/cray/pe/mpich/8.1.4/gtl/lib/libmpi_gtl_hsa.so:
undefined reference to hsa_signal_destroy [--no-allow-shlib-undefined]
ld.lld: error: /opt/cray/pe/mpich/8.1.4/gtl/lib/libmpi_gtl_hsa.so:
undefined reference to hsa_amd_memory_pool_get_info
[--no-allow-shlib-undefined]
ld.lld: error: /opt/cray/pe/mpich/8.1.4/gtl/lib/libmpi_gtl_hsa.so:
undefined reference to hsa_amd_memory_lock [--no-allow-shlib-undefined]
ld.lld: error: /opt/cray/pe/mpich/8.1.4/gtl/lib/libmpi_gtl_hsa.so:
undefined reference to hsa_amd_memory_pool_free [--no-allow-shlib-undefined]
ld.lld: error: /opt/cray/pe/mpich/8.1.4/gtl/lib/libmpi_gtl_hsa.so:
undefined reference to hsa_amd_agents_allow_access
[--no-allow-shlib-undefined]
clang-11: error: linker command failed with exit code 1 (use -v to see
invocation)
gmake: *** [Makefile:304: minigzip64] Error 1
ld.lld: error: /opt/cray/pe/mpich/8.1.4/gtl/lib/libmpi_gtl_hsa.so:
undefined reference to hsa_amd_memory_pool_allocate
[--no-allow-shlib-undefined]
ld.lld: error: /opt/cray/pe/mpich/8.1.4/gtl/lib/libmpi_gtl_hsa.so:
undefined reference to hsa_amd_agent_iterate_memory_pools
[--no-allow-shlib-undefined]
ld.lld: error: /opt/cray/pe/mpich/8.1.4/gtl/lib/libmpi_gtl_hsa.so:
undefined reference to hsa_iterate_agents [--no-allow-shlib-undefined]
ld.lld: error: /opt/cray/pe/mpich/8.1.4/gtl/lib/libmpi_gtl_hsa.so:
undefined reference to hsa_signal_load_scacquire
[--no-allow-shlib-undefined]
ld.lld: error: /opt/cray/pe/mpich/8.1.4/gtl/lib/libmpi_gtl_hsa.so:
undefined reference to hsa_amd_memory_unlock [--no-allow-shlib-undefined]
ld.lld: error: /opt/cray/pe/mpich/8.1.4/gtl/lib/libmpi_gtl_hsa.so:
undefined reference to hsa_signal_destroy [--no-allow-shlib-undefined]
ld.lld: error: /opt/cray/pe/mpich/8.1.4/gtl/lib/libmpi_gtl_hsa.so:
undefined reference to hsa_amd_memory_pool_get_info
[--no-allow-shlib-undefined]
ld.lld: error: /opt/cray/pe/mpich/8.1.4/gtl/lib/libmpi_gtl_hsa.so:
undefined reference to hsa_amd_memory_lock [--no-allow-shlib-undefined]
ld.lld: error: /opt/cray/pe/mpich/8.1.4/gtl/lib/libmpi_gtl_hsa.so:
undefined reference to hsa_amd_memory_pool_free [--no-allow-shlib-undefined]
ld.lld: error: /opt/cray/pe/mpich/8.1.4/gtl/lib/libmpi_gtl_hsa.so:
undefined reference to hsa_amd_agents_allow_access
[--no-allow-shlib-undefined]
clang-11: error: linker command failed with exit code 1 (use -v to see
invocation)
gmake: *** [Makefile:301: example64] Error 1
rm -f libz.so libz.so.1
ln -s libz.so.1.2.11 libz.so
ln -s libz.so.1.2.11 libz.so.1
11:03 2 jczhang/fix-kokkos-includes=
/gpfs/alpine/csc314/scratch/adams/petsc/arch-spock-opt-cray-kokkos/externalpackages/zlib-1.2.11$
On Wed, Jul 7, 2021 at 9:18 AM Matthew Knepley <knepley at gmail.com> wrote:
> It is hard to see the error. I suspect it is something crazy with the
> install. Can you run the build by hand?
>
> cd
> /gpfs/alpine/csc314/scratch/adams/petsc/arch-spock-opt-cray-kokkos/externalpackages/zlib-1.2.11
> && CC="cc" CFLAGS="-fPIC -fstack-protector -Qunused-arguments -g -O0
> -I${ROCM_PATH}/include"
> prefix="/gpfs/alpine/csc314/scratch/adams/petsc/arch-spock-opt-cray-kokkos"
> ./configure && /usr/bin/gmake -j8 -l307.2 && /usr/bin/gmake install
>
> and see what happens, and what the error code is?
>
> Thanks,
>
> Matt
>
> On Wed, Jul 7, 2021 at 8:48 AM Mark Adams <mfadams at lbl.gov> wrote:
>
>> Also, this is in jczhang/fix-kokkos-includes
>>
>> On Wed, Jul 7, 2021 at 8:46 AM Mark Adams <mfadams at lbl.gov> wrote:
>>
>>> Apparently the same error with
>>> --download-zlib=/yourselectedlocation/zlib-1.2.11.tar.gz
>>>
>>> On Tue, Jul 6, 2021 at 11:53 PM Barry Smith <bsmith at petsc.dev> wrote:
>>>
>>>> $ curl http://www.zlib.net/zlib-1.2.11.tar.gz > zlib-1.2.11.tar.gz
>>>> % Total % Received % Xferd Average Speed Time Time Time
>>>> Current
>>>> Dload Upload Total Spent Left
>>>> Speed
>>>> 100 593k 100 593k 0 0 835k 0 --:--:-- --:--:--
>>>> --:--:-- 834k
>>>> ~/Src/petsc* (barry/2021-07-03/demonstrate-network-parallel-build=)*
>>>> arch-demonstrate-network-parallel-build
>>>> $ tar -zxf zlib-1.2.11.tar.gz
>>>> ~/Src/petsc* (barry/2021-07-03/demonstrate-network-parallel-build=)*
>>>> arch-demonstrate-network-parallel-build
>>>> $ ls zlib-1.2.11
>>>> CMakeLists.txt adler32.c deflate.c gzread.c
>>>> inflate.h os400 watcom zlib.h
>>>> ChangeLog amiga deflate.h gzwrite.c
>>>> inftrees.c qnx win32 zlib.map
>>>> FAQ compress.c doc infback.c
>>>> inftrees.h test zconf.h zlib.pc.cmakein
>>>> INDEX configure examples inffast.c
>>>> make_vms.com treebuild.xml zconf.h.cmakein zlib.pc.in
>>>> Makefile contrib gzclose.c inffast.h msdos
>>>> trees.c zconf.h.in zlib2ansi
>>>> Makefile.in crc32.c gzguts.h inffixed.h
>>>> nintendods trees.h zlib.3 zutil.c
>>>> README crc32.h gzlib.c inflate.c old
>>>> uncompr.c zlib.3.pdf zutil.h
>>>>
>>>>
>>>>
>>>> On Jul 6, 2021, at 7:57 PM, Mark Adams <mfadams at lbl.gov> wrote:
>>>>
>>>>
>>>>
>>>> On Tue, Jul 6, 2021 at 6:42 PM Barry Smith <bsmith at petsc.dev> wrote:
>>>>
>>>>>
>>>>> Mark,
>>>>>
>>>>> You can try what the configure error message should be suggesting
>>>>> (it is not clear if that is being printed to your screen or no).
>>>>>
>>>>> ERROR: Unable to download package ZLIB from:
>>>>> http://www.zlib.net/zlib-1.2.11.tar.gz
>>>>
>>>>
>>>> My browser can not open this and I could not see a download button on
>>>> this site.
>>>>
>>>> Can you download this?
>>>>
>>>>
>>>>>
>>>>> * If URL specified manually - perhaps there is a typo?
>>>>> * If your network is disconnected - please reconnect and rerun
>>>>> ./configure
>>>>> * Or perhaps you have a firewall blocking the download
>>>>> * You can run with --with-packages-download-dir=/adirectory and
>>>>> ./configure will instruct you what packages to download manually
>>>>> * or you can download the above URL manually, to
>>>>> /yourselectedlocation/zlib-1.2.11.tar.gz
>>>>> and use the configure option:
>>>>> --download-zlib=/yourselectedlocation/zlib-1.2.11.tar.gz
>>>>>
>>>>> Barry
>>>>>
>>>>>
>>>>> > On Jul 6, 2021, at 4:29 PM, Mark Adams <mfadams at lbl.gov> wrote:
>>>>> >
>>>>> > I am getting some sort of error in build zlib on Spock at ORNL.
>>>>> > Other libraries are downloaded and I am sure the network is fine.
>>>>> > Any ideas?
>>>>> > Thanks,
>>>>> > Mark
>>>>> > <configure.log>
>>>>>
>>>>>
>>>>
>
> --
> What most experimenters take for granted before they begin their
> experiments is infinitely more interesting than any results to which their
> experiments lead.
> -- Norbert Wiener
>
> https://www.cse.buffalo.edu/~knepley/
> <http://www.cse.buffalo.edu/~knepley/>
>
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