[petsc-users] download zlib error

Stefano Zampini stefano.zampini at gmail.com
Wed Jul 7 10:08:16 CDT 2021 

Mark

On Spock, you can use https://gitlab.com/petsc/petsc/-/blob/main/config/examples/arch-olcf-spock.py <https://gitlab.com/petsc/petsc/-/blob/main/config/examples/arch-olcf-spock.py> as a template for your configuration. You need to add libraries as LDFLAGS to resolve the hsa symbols

> On Jul 7, 2021, at 5:04 PM, Mark Adams <mfadams at lbl.gov> wrote:
> 
> Thanks,
> 
> 08:30 jczhang/fix-kokkos-includes= /gpfs/alpine/csc314/scratch/adams/petsc$ cd /gpfs/alpine/csc314/scratch/adams/petsc/arch-spock-opt-cray-kokkos/externalpackages/zlib-1.2.11 && CC="cc" CFLAGS="-fPIC -fstack-protector -Qunused-arguments -g -O0 -I${ROCM_PATH}/include" prefix="/gpfs/alpine/csc314/scratch/adams/petsc/arch-spock-opt-cray-kokkos" ./configure  && /usr/bin/gmake -j8 -l307.2 &&  /usr/bin/gmake install
> Checking for shared library support...
> Building shared library libz.so.1.2.11 with cc.
> Checking for size_t... Yes.
> Checking for off64_t... Yes.
> Checking for fseeko... Yes.
> Checking for strerror... No.
> Checking for unistd.h... Yes.
> Checking for stdarg.h... Yes.
> Checking whether to use vs[n]printf() or s[n]printf()... using vs[n]printf().
> Checking for vsnprintf() in stdio.h... No.
>   WARNING: vsnprintf() not found, falling back to vsprintf(). zlib
>   can build but will be open to possible buffer-overflow security
>   vulnerabilities.
> Checking for return value of vsprintf()... Yes.
> Checking for attribute(visibility) support... Yes.
> cc -fPIC -fstack-protector -Qunused-arguments -g -O0 -I/sw/spock/spack-envs/views/rocm-4.1.0/include -D_LARGEFILE64_SOURCE=1 -DNO_STRERROR -DNO_vsnprintf -DHAVE_HIDDEN -I. -c -o example.o test/example.c
> cc -fPIC -fstack-protector -Qunused-arguments -g -O0 -I/sw/spock/spack-envs/views/rocm-4.1.0/include -D_LARGEFILE64_SOURCE=1 -DNO_STRERROR -DNO_vsnprintf -DHAVE_HIDDEN  -c -o adler32.o adler32.c
> cc -fPIC -fstack-protector -Qunused-arguments -g -O0 -I/sw/spock/spack-envs/views/rocm-4.1.0/include -D_LARGEFILE64_SOURCE=1 -DNO_STRERROR -DNO_vsnprintf -DHAVE_HIDDEN  -c -o crc32.o crc32.c
> cc -fPIC -fstack-protector -Qunused-arguments -g -O0 -I/sw/spock/spack-envs/views/rocm-4.1.0/include -D_LARGEFILE64_SOURCE=1 -DNO_STRERROR -DNO_vsnprintf -DHAVE_HIDDEN  -c -o deflate.o deflate.c
> cc -fPIC -fstack-protector -Qunused-arguments -g -O0 -I/sw/spock/spack-envs/views/rocm-4.1.0/include -D_LARGEFILE64_SOURCE=1 -DNO_STRERROR -DNO_vsnprintf -DHAVE_HIDDEN  -c -o infback.o infback.c
> cc -fPIC -fstack-protector -Qunused-arguments -g -O0 -I/sw/spock/spack-envs/views/rocm-4.1.0/include -D_LARGEFILE64_SOURCE=1 -DNO_STRERROR -DNO_vsnprintf -DHAVE_HIDDEN  -c -o inffast.o inffast.c
> cc -fPIC -fstack-protector -Qunused-arguments -g -O0 -I/sw/spock/spack-envs/views/rocm-4.1.0/include -D_LARGEFILE64_SOURCE=1 -DNO_STRERROR -DNO_vsnprintf -DHAVE_HIDDEN  -c -o inflate.o inflate.c
> cc -fPIC -fstack-protector -Qunused-arguments -g -O0 -I/sw/spock/spack-envs/views/rocm-4.1.0/include -D_LARGEFILE64_SOURCE=1 -DNO_STRERROR -DNO_vsnprintf -DHAVE_HIDDEN  -c -o inftrees.o inftrees.c
> cc -fPIC -fstack-protector -Qunused-arguments -g -O0 -I/sw/spock/spack-envs/views/rocm-4.1.0/include -D_LARGEFILE64_SOURCE=1 -DNO_STRERROR -DNO_vsnprintf -DHAVE_HIDDEN  -c -o trees.o trees.c
> cc -fPIC -fstack-protector -Qunused-arguments -g -O0 -I/sw/spock/spack-envs/views/rocm-4.1.0/include -D_LARGEFILE64_SOURCE=1 -DNO_STRERROR -DNO_vsnprintf -DHAVE_HIDDEN  -c -o zutil.o zutil.c
> cc -fPIC -fstack-protector -Qunused-arguments -g -O0 -I/sw/spock/spack-envs/views/rocm-4.1.0/include -D_LARGEFILE64_SOURCE=1 -DNO_STRERROR -DNO_vsnprintf -DHAVE_HIDDEN  -c -o compress.o compress.c
> cc -fPIC -fstack-protector -Qunused-arguments -g -O0 -I/sw/spock/spack-envs/views/rocm-4.1.0/include -D_LARGEFILE64_SOURCE=1 -DNO_STRERROR -DNO_vsnprintf -DHAVE_HIDDEN  -c -o uncompr.o uncompr.c
> cc -fPIC -fstack-protector -Qunused-arguments -g -O0 -I/sw/spock/spack-envs/views/rocm-4.1.0/include -D_LARGEFILE64_SOURCE=1 -DNO_STRERROR -DNO_vsnprintf -DHAVE_HIDDEN  -c -o gzclose.o gzclose.c
> cc -fPIC -fstack-protector -Qunused-arguments -g -O0 -I/sw/spock/spack-envs/views/rocm-4.1.0/include -D_LARGEFILE64_SOURCE=1 -DNO_STRERROR -DNO_vsnprintf -DHAVE_HIDDEN  -c -o gzlib.o gzlib.c
> cc -fPIC -fstack-protector -Qunused-arguments -g -O0 -I/sw/spock/spack-envs/views/rocm-4.1.0/include -D_LARGEFILE64_SOURCE=1 -DNO_STRERROR -DNO_vsnprintf -DHAVE_HIDDEN  -c -o gzread.o gzread.c
> cc -fPIC -fstack-protector -Qunused-arguments -g -O0 -I/sw/spock/spack-envs/views/rocm-4.1.0/include -D_LARGEFILE64_SOURCE=1 -DNO_STRERROR -DNO_vsnprintf -DHAVE_HIDDEN  -c -o gzwrite.o gzwrite.c
> cc -fPIC -fstack-protector -Qunused-arguments -g -O0 -I/sw/spock/spack-envs/views/rocm-4.1.0/include -D_LARGEFILE64_SOURCE=1 -DNO_STRERROR -DNO_vsnprintf -DHAVE_HIDDEN -I. -c -o minigzip.o test/minigzip.c
> cc -fPIC -fstack-protector -Qunused-arguments -g -O0 -I/sw/spock/spack-envs/views/rocm-4.1.0/include -fPIC -D_LARGEFILE64_SOURCE=1 -DNO_STRERROR -DNO_vsnprintf -DHAVE_HIDDEN  -DPIC -c -o objs/adler32.o adler32.c
> cc -fPIC -fstack-protector -Qunused-arguments -g -O0 -I/sw/spock/spack-envs/views/rocm-4.1.0/include -fPIC -D_LARGEFILE64_SOURCE=1 -DNO_STRERROR -DNO_vsnprintf -DHAVE_HIDDEN  -DPIC -c -o objs/crc32.o crc32.c
> cc -fPIC -fstack-protector -Qunused-arguments -g -O0 -I/sw/spock/spack-envs/views/rocm-4.1.0/include -fPIC -D_LARGEFILE64_SOURCE=1 -DNO_STRERROR -DNO_vsnprintf -DHAVE_HIDDEN  -DPIC -c -o objs/deflate.o deflate.c
> cc -fPIC -fstack-protector -Qunused-arguments -g -O0 -I/sw/spock/spack-envs/views/rocm-4.1.0/include -fPIC -D_LARGEFILE64_SOURCE=1 -DNO_STRERROR -DNO_vsnprintf -DHAVE_HIDDEN  -DPIC -c -o objs/infback.o infback.c
> cc -fPIC -fstack-protector -Qunused-arguments -g -O0 -I/sw/spock/spack-envs/views/rocm-4.1.0/include -fPIC -D_LARGEFILE64_SOURCE=1 -DNO_STRERROR -DNO_vsnprintf -DHAVE_HIDDEN  -DPIC -c -o objs/inffast.o inffast.c
> cc -fPIC -fstack-protector -Qunused-arguments -g -O0 -I/sw/spock/spack-envs/views/rocm-4.1.0/include -fPIC -D_LARGEFILE64_SOURCE=1 -DNO_STRERROR -DNO_vsnprintf -DHAVE_HIDDEN  -DPIC -c -o objs/inflate.o inflate.c
> cc -fPIC -fstack-protector -Qunused-arguments -g -O0 -I/sw/spock/spack-envs/views/rocm-4.1.0/include -fPIC -D_LARGEFILE64_SOURCE=1 -DNO_STRERROR -DNO_vsnprintf -DHAVE_HIDDEN  -DPIC -c -o objs/inftrees.o inftrees.c
> cc -fPIC -fstack-protector -Qunused-arguments -g -O0 -I/sw/spock/spack-envs/views/rocm-4.1.0/include -fPIC -D_LARGEFILE64_SOURCE=1 -DNO_STRERROR -DNO_vsnprintf -DHAVE_HIDDEN  -DPIC -c -o objs/trees.o trees.c
> cc -fPIC -fstack-protector -Qunused-arguments -g -O0 -I/sw/spock/spack-envs/views/rocm-4.1.0/include -fPIC -D_LARGEFILE64_SOURCE=1 -DNO_STRERROR -DNO_vsnprintf -DHAVE_HIDDEN  -DPIC -c -o objs/zutil.o zutil.c
> cc -fPIC -fstack-protector -Qunused-arguments -g -O0 -I/sw/spock/spack-envs/views/rocm-4.1.0/include -fPIC -D_LARGEFILE64_SOURCE=1 -DNO_STRERROR -DNO_vsnprintf -DHAVE_HIDDEN  -DPIC -c -o objs/compress.o compress.c
> cc -fPIC -fstack-protector -Qunused-arguments -g -O0 -I/sw/spock/spack-envs/views/rocm-4.1.0/include -fPIC -D_LARGEFILE64_SOURCE=1 -DNO_STRERROR -DNO_vsnprintf -DHAVE_HIDDEN  -DPIC -c -o objs/uncompr.o uncompr.c
> cc -fPIC -fstack-protector -Qunused-arguments -g -O0 -I/sw/spock/spack-envs/views/rocm-4.1.0/include -fPIC -D_LARGEFILE64_SOURCE=1 -DNO_STRERROR -DNO_vsnprintf -DHAVE_HIDDEN  -DPIC -c -o objs/gzclose.o gzclose.c
> cc -fPIC -fstack-protector -Qunused-arguments -g -O0 -I/sw/spock/spack-envs/views/rocm-4.1.0/include -fPIC -D_LARGEFILE64_SOURCE=1 -DNO_STRERROR -DNO_vsnprintf -DHAVE_HIDDEN  -DPIC -c -o objs/gzlib.o gzlib.c
> cc -fPIC -fstack-protector -Qunused-arguments -g -O0 -I/sw/spock/spack-envs/views/rocm-4.1.0/include -fPIC -D_LARGEFILE64_SOURCE=1 -DNO_STRERROR -DNO_vsnprintf -DHAVE_HIDDEN  -DPIC -c -o objs/gzread.o gzread.c
> cc -fPIC -fstack-protector -Qunused-arguments -g -O0 -I/sw/spock/spack-envs/views/rocm-4.1.0/include -fPIC -D_LARGEFILE64_SOURCE=1 -DNO_STRERROR -DNO_vsnprintf -DHAVE_HIDDEN  -DPIC -c -o objs/gzwrite.o gzwrite.c
> cc -fPIC -fstack-protector -Qunused-arguments -g -O0 -I/sw/spock/spack-envs/views/rocm-4.1.0/include -D_LARGEFILE64_SOURCE=1 -DNO_STRERROR -DNO_vsnprintf -DHAVE_HIDDEN -I. -D_FILE_OFFSET_BITS=64 -c -o example64.o test/example.c
> cc -fPIC -fstack-protector -Qunused-arguments -g -O0 -I/sw/spock/spack-envs/views/rocm-4.1.0/include -D_LARGEFILE64_SOURCE=1 -DNO_STRERROR -DNO_vsnprintf -DHAVE_HIDDEN -I. -D_FILE_OFFSET_BITS=64 -c -o minigzip64.o test/minigzip.c
> ar rc libz.a adler32.o crc32.o deflate.o infback.o inffast.o inflate.o inftrees.o trees.o zutil.o compress.o uncompr.o gzclose.o gzlib.o gzread.o gzwrite.o
> cc -fPIC -fstack-protector -Qunused-arguments -g -O0 -I/sw/spock/spack-envs/views/rocm-4.1.0/include -D_LARGEFILE64_SOURCE=1 -DNO_STRERROR -DNO_vsnprintf -DHAVE_HIDDEN -o example example.o -L. libz.a
> cc -fPIC -fstack-protector -Qunused-arguments -g -O0 -I/sw/spock/spack-envs/views/rocm-4.1.0/include -D_LARGEFILE64_SOURCE=1 -DNO_STRERROR -DNO_vsnprintf -DHAVE_HIDDEN -o minigzip minigzip.o -L. libz.a
> cc -shared -Wl,-soname,libz.so.1,--version-script,zlib.map -fPIC -fstack-protector -Qunused-arguments -g -O0 -I/sw/spock/spack-envs/views/rocm-4.1.0/include -fPIC -D_LARGEFILE64_SOURCE=1 -DNO_STRERROR -DNO_vsnprintf -DHAVE_HIDDEN -o libz.so.1.2.11 adler32.lo crc32.lo deflate.lo infback.lo inffast.lo inflate.lo inftrees.lo trees.lo zutil.lo compress.lo uncompr.lo gzclose.lo gzlib.lo gzread.lo gzwrite.lo  -lc
> cc -fPIC -fstack-protector -Qunused-arguments -g -O0 -I/sw/spock/spack-envs/views/rocm-4.1.0/include -D_LARGEFILE64_SOURCE=1 -DNO_STRERROR -DNO_vsnprintf -DHAVE_HIDDEN -o minigzip64 minigzip64.o -L. libz.a
> cc -fPIC -fstack-protector -Qunused-arguments -g -O0 -I/sw/spock/spack-envs/views/rocm-4.1.0/include -D_LARGEFILE64_SOURCE=1 -DNO_STRERROR -DNO_vsnprintf -DHAVE_HIDDEN -o example64 example64.o -L. libz.a
> ld.lld: error: /opt/cray/pe/mpich/8.1.4/gtl/lib/libmpi_gtl_hsa.so: undefined reference to hsa_amd_memory_pool_allocate [--no-allow-shlib-undefined]
> ld.lld: error: /opt/cray/pe/mpich/8.1.4/gtl/lib/libmpi_gtl_hsa.so: undefined reference to hsa_amd_agent_iterate_memory_pools [--no-allow-shlib-undefined]
> ld.lld: error: /opt/cray/pe/mpich/8.1.4/gtl/lib/libmpi_gtl_hsa.so: undefined reference to hsa_iterate_agents [--no-allow-shlib-undefined]
> ld.lld: error: /opt/cray/pe/mpich/8.1.4/gtl/lib/libmpi_gtl_hsa.so: undefined reference to hsa_signal_load_scacquire [--no-allow-shlib-undefined]
> ld.lldld.lld: : error: error: /opt/cray/pe/mpich/8.1.4/gtl/lib/libmpi_gtl_hsa.so: undefined reference to hsa_amd_memory_pool_allocate [--no-allow-shlib-undefined]/opt/cray/pe/mpich/8.1.4/gtl/lib/libmpi_gtl_hsa.so: undefined reference to hsa_amd_memory_unlock [--no-allow-shlib-undefined]
> 
> ld.lldld.lld: : error: error: /opt/cray/pe/mpich/8.1.4/gtl/lib/libmpi_gtl_hsa.so: undefined reference to hsa_amd_agent_iterate_memory_pools [--no-allow-shlib-undefined]/opt/cray/pe/mpich/8.1.4/gtl/lib/libmpi_gtl_hsa.so: undefined reference to hsa_signal_destroy [--no-allow-shlib-undefined]
> 
> ld.lldld.lld: : error: error: /opt/cray/pe/mpich/8.1.4/gtl/lib/libmpi_gtl_hsa.so: undefined reference to hsa_iterate_agents [--no-allow-shlib-undefined]/opt/cray/pe/mpich/8.1.4/gtl/lib/libmpi_gtl_hsa.so: undefined reference to hsa_amd_memory_pool_get_info [--no-allow-shlib-undefined]
> 
> ld.lldld.lld: : error: error: /opt/cray/pe/mpich/8.1.4/gtl/lib/libmpi_gtl_hsa.so: undefined reference to hsa_signal_load_scacquire [--no-allow-shlib-undefined]/opt/cray/pe/mpich/8.1.4/gtl/lib/libmpi_gtl_hsa.so: undefined reference to hsa_amd_memory_lock [--no-allow-shlib-undefined]
> 
> ld.lldld.lld: : error: error: /opt/cray/pe/mpich/8.1.4/gtl/lib/libmpi_gtl_hsa.so: undefined reference to hsa_amd_memory_unlock [--no-allow-shlib-undefined]/opt/cray/pe/mpich/8.1.4/gtl/lib/libmpi_gtl_hsa.so: undefined reference to hsa_amd_memory_pool_free [--no-allow-shlib-undefined]
> 
> ld.lldld.lld: : error: error: /opt/cray/pe/mpich/8.1.4/gtl/lib/libmpi_gtl_hsa.so: undefined reference to hsa_signal_destroy [--no-allow-shlib-undefined]/opt/cray/pe/mpich/8.1.4/gtl/lib/libmpi_gtl_hsa.so: undefined reference to hsa_amd_agents_allow_access [--no-allow-shlib-undefined]
> 
> ld.lld: error: /opt/cray/pe/mpich/8.1.4/gtl/lib/libmpi_gtl_hsa.so: undefined reference to hsa_amd_memory_pool_get_info [--no-allow-shlib-undefined]
> ld.lld: error: /opt/cray/pe/mpich/8.1.4/gtl/lib/libmpi_gtl_hsa.so: undefined reference to hsa_amd_memory_lock [--no-allow-shlib-undefined]
> ld.lld: error: /opt/cray/pe/mpich/8.1.4/gtl/lib/libmpi_gtl_hsa.so: undefined reference to hsa_amd_memory_pool_free [--no-allow-shlib-undefined]
> ld.lld: error: /opt/cray/pe/mpich/8.1.4/gtl/lib/libmpi_gtl_hsa.so: undefined reference to hsa_amd_agents_allow_access [--no-allow-shlib-undefined]
> clang-11: error: linker command failed with exit code 1 (use -v to see invocation)
> clang-11: error: linker command failed with exit code 1 (use -v to see invocation)
> gmake: *** [Makefile:292: minigzip] Error 1
> gmake: *** Waiting for unfinished jobs....
> gmake: *** [Makefile:289: example] Error 1
> ld.lld: error: /opt/cray/pe/mpich/8.1.4/gtl/lib/libmpi_gtl_hsa.so: undefined reference to hsa_amd_memory_pool_allocate [--no-allow-shlib-undefined]
> ld.lld: error: /opt/cray/pe/mpich/8.1.4/gtl/lib/libmpi_gtl_hsa.so: undefined reference to hsa_amd_agent_iterate_memory_pools [--no-allow-shlib-undefined]
> ld.lld: error: /opt/cray/pe/mpich/8.1.4/gtl/lib/libmpi_gtl_hsa.so: undefined reference to hsa_iterate_agents [--no-allow-shlib-undefined]
> ld.lld: error: /opt/cray/pe/mpich/8.1.4/gtl/lib/libmpi_gtl_hsa.so: undefined reference to hsa_signal_load_scacquire [--no-allow-shlib-undefined]
> ld.lld: error: /opt/cray/pe/mpich/8.1.4/gtl/lib/libmpi_gtl_hsa.so: undefined reference to hsa_amd_memory_unlock [--no-allow-shlib-undefined]
> ld.lld: error: /opt/cray/pe/mpich/8.1.4/gtl/lib/libmpi_gtl_hsa.so: undefined reference to hsa_signal_destroy [--no-allow-shlib-undefined]
> ld.lld: error: /opt/cray/pe/mpich/8.1.4/gtl/lib/libmpi_gtl_hsa.so: undefined reference to hsa_amd_memory_pool_get_info [--no-allow-shlib-undefined]
> ld.lld: error: /opt/cray/pe/mpich/8.1.4/gtl/lib/libmpi_gtl_hsa.so: undefined reference to hsa_amd_memory_lock [--no-allow-shlib-undefined]
> ld.lld: error: /opt/cray/pe/mpich/8.1.4/gtl/lib/libmpi_gtl_hsa.so: undefined reference to hsa_amd_memory_pool_free [--no-allow-shlib-undefined]
> ld.lld: error: /opt/cray/pe/mpich/8.1.4/gtl/lib/libmpi_gtl_hsa.so: undefined reference to hsa_amd_agents_allow_access [--no-allow-shlib-undefined]
> clang-11: error: linker command failed with exit code 1 (use -v to see invocation)
> gmake: *** [Makefile:304: minigzip64] Error 1
> ld.lld: error: /opt/cray/pe/mpich/8.1.4/gtl/lib/libmpi_gtl_hsa.so: undefined reference to hsa_amd_memory_pool_allocate [--no-allow-shlib-undefined]
> ld.lld: error: /opt/cray/pe/mpich/8.1.4/gtl/lib/libmpi_gtl_hsa.so: undefined reference to hsa_amd_agent_iterate_memory_pools [--no-allow-shlib-undefined]
> ld.lld: error: /opt/cray/pe/mpich/8.1.4/gtl/lib/libmpi_gtl_hsa.so: undefined reference to hsa_iterate_agents [--no-allow-shlib-undefined]
> ld.lld: error: /opt/cray/pe/mpich/8.1.4/gtl/lib/libmpi_gtl_hsa.so: undefined reference to hsa_signal_load_scacquire [--no-allow-shlib-undefined]
> ld.lld: error: /opt/cray/pe/mpich/8.1.4/gtl/lib/libmpi_gtl_hsa.so: undefined reference to hsa_amd_memory_unlock [--no-allow-shlib-undefined]
> ld.lld: error: /opt/cray/pe/mpich/8.1.4/gtl/lib/libmpi_gtl_hsa.so: undefined reference to hsa_signal_destroy [--no-allow-shlib-undefined]
> ld.lld: error: /opt/cray/pe/mpich/8.1.4/gtl/lib/libmpi_gtl_hsa.so: undefined reference to hsa_amd_memory_pool_get_info [--no-allow-shlib-undefined]
> ld.lld: error: /opt/cray/pe/mpich/8.1.4/gtl/lib/libmpi_gtl_hsa.so: undefined reference to hsa_amd_memory_lock [--no-allow-shlib-undefined]
> ld.lld: error: /opt/cray/pe/mpich/8.1.4/gtl/lib/libmpi_gtl_hsa.so: undefined reference to hsa_amd_memory_pool_free [--no-allow-shlib-undefined]
> ld.lld: error: /opt/cray/pe/mpich/8.1.4/gtl/lib/libmpi_gtl_hsa.so: undefined reference to hsa_amd_agents_allow_access [--no-allow-shlib-undefined]
> clang-11: error: linker command failed with exit code 1 (use -v to see invocation)
> gmake: *** [Makefile:301: example64] Error 1
> rm -f libz.so libz.so.1
> ln -s libz.so.1.2.11 libz.so
> ln -s libz.so.1.2.11 libz.so.1
> 11:03 2 jczhang/fix-kokkos-includes= /gpfs/alpine/csc314/scratch/adams/petsc/arch-spock-opt-cray-kokkos/externalpackages/zlib-1.2.11$
> 
> On Wed, Jul 7, 2021 at 9:18 AM Matthew Knepley <knepley at gmail.com <mailto:knepley at gmail.com>> wrote:
> It is hard to see the error. I suspect it is something crazy with the install. Can you run the build by hand?
> 
> cd /gpfs/alpine/csc314/scratch/adams/petsc/arch-spock-opt-cray-kokkos/externalpackages/zlib-1.2.11 && CC="cc" CFLAGS="-fPIC -fstack-protector -Qunused-arguments -g -O0 -I${ROCM_PATH}/include" prefix="/gpfs/alpine/csc314/scratch/adams/petsc/arch-spock-opt-cray-kokkos" ./configure  && /usr/bin/gmake -j8 -l307.2 &&  /usr/bin/gmake install
> 
> and see what happens, and what the error code is?
> 
>   Thanks,
> 
>      Matt
> 
> On Wed, Jul 7, 2021 at 8:48 AM Mark Adams <mfadams at lbl.gov <mailto:mfadams at lbl.gov>> wrote:
> Also, this is in jczhang/fix-kokkos-includes
> 
> On Wed, Jul 7, 2021 at 8:46 AM Mark Adams <mfadams at lbl.gov <mailto:mfadams at lbl.gov>> wrote:
> Apparently the same error with --download-zlib=/yourselectedlocation/zlib-1.2.11.tar.gz
> 
> On Tue, Jul 6, 2021 at 11:53 PM Barry Smith <bsmith at petsc.dev <mailto:bsmith at petsc.dev>> wrote:
> $ curl http://www.zlib.net/zlib-1.2.11.tar.gz <http://www.zlib.net/zlib-1.2.11.tar.gz> > zlib-1.2.11.tar.gz
>   % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
>                                  Dload  Upload   Total   Spent    Left  Speed
> 100  593k  100  593k    0     0   835k      0 --:--:-- --:--:-- --:--:--  834k
> ~/Src/petsc (barry/2021-07-03/demonstrate-network-parallel-build=) arch-demonstrate-network-parallel-build
> $ tar -zxf zlib-1.2.11.tar.gz 
> ~/Src/petsc (barry/2021-07-03/demonstrate-network-parallel-build=) arch-demonstrate-network-parallel-build
> $ ls zlib-1.2.11
> CMakeLists.txt  adler32.c       deflate.c       gzread.c        inflate.h       os400           watcom          zlib.h
> ChangeLog       amiga           deflate.h       gzwrite.c       inftrees.c      qnx             win32           zlib.map
> FAQ             compress.c      doc             infback.c       inftrees.h      test            zconf.h         zlib.pc.cmakein
> INDEX           configure       examples        inffast.c       make_vms.com <http://make_vms.com/>    treebuild.xml   zconf.h.cmakein zlib.pc.in <http://zlib.pc.in/>
> Makefile        contrib         gzclose.c       inffast.h       msdos           trees.c         zconf.h.in <http://zconf.h.in/>      zlib2ansi
> Makefile.in     crc32.c         gzguts.h        inffixed.h      nintendods      trees.h         zlib.3          zutil.c
> README          crc32.h         gzlib.c         inflate.c       old             uncompr.c       zlib.3.pdf      zutil.h
> 
> 
> 
>> On Jul 6, 2021, at 7:57 PM, Mark Adams <mfadams at lbl.gov <mailto:mfadams at lbl.gov>> wrote:
>> 
>> 
>> 
>> On Tue, Jul 6, 2021 at 6:42 PM Barry Smith <bsmith at petsc.dev <mailto:bsmith at petsc.dev>> wrote:
>> 
>>   Mark,
>> 
>>    You can try what the configure error message should be suggesting (it is not clear if that is being printed to your screen or no).
>> 
>> ERROR: Unable to download package ZLIB from: http://www.zlib.net/zlib-1.2.11.tar.gz <http://www.zlib.net/zlib-1.2.11.tar.gz>
>> 
>> My browser can not open this and I could not see a download button on this site.
>> 
>> Can you download this?
>>  
>> 
>> * If URL specified manually - perhaps there is a typo?
>> * If your network is disconnected - please reconnect and rerun ./configure
>> * Or perhaps you have a firewall blocking the download
>> * You can run with --with-packages-download-dir=/adirectory and ./configure will instruct you what packages to download manually
>> * or you can download the above URL manually, to /yourselectedlocation/zlib-1.2.11.tar.gz
>>   and use the configure option:
>>   --download-zlib=/yourselectedlocation/zlib-1.2.11.tar.gz
>> 
>>   Barry
>> 
>> 
>> > On Jul 6, 2021, at 4:29 PM, Mark Adams <mfadams at lbl.gov <mailto:mfadams at lbl.gov>> wrote:
>> > 
>> > I am getting some sort of error in build zlib on Spock at ORNL.
>> > Other libraries are downloaded and I am sure the network is fine.
>> > Any ideas?
>> > Thanks,
>> > Mark
>> > <configure.log>
>> 
> 
> 
> 
> -- 
> What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead.
> -- Norbert Wiener
> 
> https://www.cse.buffalo.edu/~knepley/ <http://www.cse.buffalo.edu/~knepley/>

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