[petsc-users] Can't compile code after upgrading to VS2017 and Intel One API + PETSc 3.15
Satish Balay
balay at mcs.anl.gov
Wed Apr 14 10:55:48 CDT 2021
Please send the file /cygdrive/d/Lib/petsc-3.15.0_win64_impi_vs2017//lib/petsc/conf/petscvariables
Satish
On Wed, 14 Apr 2021, TAY wee-beng wrote:
> Hi,
>
> I redo the installation:
>
> /*Now to install the libraries do:*//*
> *//*make PETSC_DIR=/cygdrive/d/wtay/Downloads/Source_codes/petsc-3.15.0
> PETSC_ARCH=petsc-3.15.0_win64_impi_vs2017 install*//*
> *//*=========================================*//*
> *//*
> *//*DELL-T7610+wtay at DELL-T7610
> /cygdrive/d/wtay/Downloads/Source_codes/petsc-3.15.0*//*
> *//*$ make PETSC_DIR=/cygdrive/d/wtay/Downloads/Source_codes/petsc-3.15.0
> PETSC_ARCH=petsc-3.15.0_win64_impi_vs2017 install*//*
> *//**** Using PETSC_DIR=/cygdrive/d/wtay/Downloads/Source_codes/petsc-3.15.0
> PETSC_ARCH=petsc-3.15.0_win64_impi_vs2017 ****//*
> *//**** Installing PETSc at prefix location:
> /cygdrive/d/Lib/petsc-3.15.0_win64_impi_vs2017 ****//*
> *//*====================================*//*
> *//*Install complete.*//*
> *//*Now to check if the libraries are working do (in current directory):*//*
> *//*make PETSC_DIR=/cygdrive/d/Lib/petsc-3.15.0_win64_impi_vs2017
> PETSC_ARCH="" check*//*
> *//*====================================*//*
> *//*/usr/bin/make --no-print-directory -f makefile
> PETSC_ARCH=petsc-3.15.0_win64_impi_vs2017
> PETSC_DIR=/cygdrive/d/wtay/Downloads/Source_codes/petsc-3.15.0 mpi4py-install
> petsc4py-install libmesh-install mfem-insta*//*
> *//*ll slepc-install hpddm-install amrex-install bamg-install*//*
> *//*make[2]: Nothing to be done for 'mpi4py-install'.*//*
> *//*make[2]: Nothing to be done for 'petsc4py-install'.*//*
> *//*make[2]: Nothing to be done for 'libmesh-install'.*//*
> *//*make[2]: Nothing to be done for 'mfem-install'.*//*
> *//*make[2]: Nothing to be done for 'slepc-install'.*//*
> *//*make[2]: Nothing to be done for 'hpddm-install'.*//*
> *//*make[2]: Nothing to be done for 'amrex-install'.*//*
> *//*make[2]: Nothing to be done for 'bamg-install'.*//*
> */
> DELL-T7610+wtay at DELL-T7610
> /cygdrive/d/wtay/Downloads/Source_codes/petsc-3.15.0
>
> I ran the check:
>
> /*$ make PETSC_DIR=/cygdrive/d/Lib/petsc-3.15.0_win64_impi_vs2017
> PETSC_ARCH="" check*//*
> *//*/cygdrive/d/Lib/petsc-3.15.0_win64_impi_vs2017//lib/petsc/conf/petscvariables:5:
> *** missing separator. Stop.*/
>
> Why is this happening?
>
> Thank you very much.
>
> Yours sincerely,
>
> ================================================
> TAY Wee-Beng 郑伟明 (Zheng Weiming)
> Personal research webpage: _http://tayweebeng.wixsite.com/website_
> Youtube research showcase: _https://goo.gl/PtvdwQ_
> linkedin: _https://www.linkedin.com/in/tay-weebeng_
> ================================================
>
> On 14/4/2021 6:01 pm, Mark Adams wrote:
> > You have PETSC_ARCH=petsc-3.15.0_win64_impi_vs2017
> > I think you use PETSC_ARCH="" for installed libs.
> > When you do the install it will tell you exactly what to run to run "check".
> > You might double check that .
> > Mark
> >
> > On Wed, Apr 14, 2021 at 4:10 AM TAY wee-beng <zonexo at gmail.com
> > <mailto:zonexo at gmail.com>> wrote:
> >
> > Hi Barry,
> >
> > Ops, which dir should I run /*export PETSC_DIR=`pwd`*//*
> > */
> >
> > Maybe I ran it wrongly initially at where the lib is stored:
> > /*/cygdrive/d/Lib/petsc-3.15.0_win64_impi_vs2017/*//*
> > */
> >
> > My source is at
> >
> > /*/cygdrive/d/wtay/Downloads/Source_codes/petsc-3.15.0*/
> >
> > Now I ran:
> >
> > /*export PETSC_DIR=`pwd`*//*
> > *//*cd src/ksp/ksp/tutorials/*//*
> > *//*make ex2f*/
> >
> > /*/cygdrive/d/wtay/Downloads/Source_codes/petsc-3.15.0/lib/petsc/bin/win32fe/win32fe
> > ifort -MD -Z7 -fpp -MD -Z7 -fpp
> > -I/cygdrive/d/wtay/Downloads/Source_codes/petsc-3.15.0/include
> > -I/cygdrive/d/wtay/Downloads/S*//*
> > *//*ource_codes/petsc-3.15.0/petsc-3.15.0_win64_impi_vs2017/include
> > -I/cygdrive/c/Program\ Files\
> > \(x86\)/Intel/oneAPI/mpi/latest/include ex2f.F90
> > -R/cygdrive/d/wtay/Downloads/Source_codes/petsc-3.15.0/petsc-3.*//*
> > *//*15.0_win64_impi_vs2017/lib
> > -L/cygdrive/d/wtay/Downloads/Source_codes/petsc-3.15.0/petsc-3.15.0_win64_impi_vs2017/lib
> > -R/cygdrive/d/Lib/petsc-3.15.0_win64_impi_vs2017/lib
> > -L/cygdrive/d/Lib/petsc-3.15.0_win64_impi*//*
> > *//*_vs2017/lib -lpetsc -lflapack -lfblas /cygdrive/c/Program\
> > Files\ \(x86\)/Intel/oneAPI/mpi/latest/lib/debug/impi.lib
> > /cygdrive/c/Program\ Files\
> > \(x86\)/Intel/oneAPI/mpi/latest/lib/debug/impicxx.lib /cygdrive/c/*//*
> > *//*Program\ Files\
> > \(x86\)/Intel/oneAPI/mpi/latest/lib/libmpi_ilp64.lib Gdi32.lib
> > User32.lib Advapi32.lib Kernel32.lib Ws2_32.lib -o ex2f*//*
> > *//*ifort: command line warning #10006: ignoring unknown option
> > '/R/cygdrive/d/wtay/Downloads/Source_codes/petsc-3.15.0/petsc-3.15.0_win64_impi_vs2017/lib'*//*
> > *//*ifort: command line warning #10006: ignoring unknown option
> > '/R/cygdrive/d/Lib/petsc-3.15.0_win64_impi_vs2017/lib'*//*
> > *//*ex2f.F90(80): error #6405: The same named entity from
> > different modules and/or program units cannot be referenced.
> > [PETSC_COMM_WORLD]*//*
> > *//* call MPI_Comm_rank(PETSC_COMM_WORLD,rank,ierr)*//*
> > *//*-------------------------^*//*
> > *//*ex2f.F90(80): error #7112: This actual argument must not be
> > the name of a procedure. [PETSC_COMM_WORLD]*//*
> > *//* call MPI_Comm_rank(PETSC_COMM_WORLD,rank,ierr)*//*
> > *//*-------------------------^*//*
> > *//*ex2f.F90(81): error #6405: The same named entity from
> > different modules and/or program units cannot be referenced.
> > [PETSC_COMM_WORLD]*//*
> > *//* call MPI_Comm_size(PETSC_COMM_WORLD,size,ierr)*//*
> > *//*-------------------------^*//*
> > *//*ex2f.F90(81): error #7112: This actual argument must not be
> > the name of a procedure. [PETSC_COMM_WORLD]*//*
> > *//* call MPI_Comm_size(PETSC_COMM_WORLD,size,ierr)*//*
> > *//*-------------------------^*//*
> > *//*ex2f.F90(93): error #6405: The same named entity from
> > different modules and/or program units cannot be referenced.
> > [PETSC_COMM_WORLD]*//*
> > *//* call MatCreate(PETSC_COMM_WORLD,A,ierr)*//*
> > *//*---------------------^*//*
> > *//*ex2f.F90(93): error #7112: This actual argument must not be
> > the name of a procedure. [PETSC_COMM_WORLD]*//*
> > *//* call MatCreate(PETSC_COMM_WORLD,A,ierr)*//*
> > *//*---------------------^*//*
> > *//*ex2f.F90(159): error #6405: The same named entity from
> > different modules and/or program units cannot be referenced.
> > [PETSC_COMM_WORLD]*//*
> > *//* call
> > VecCreateMPI(PETSC_COMM_WORLD,PETSC_DECIDE,m*n,u,ierr)*//*
> > *//*------------------------^*//*
> > *//*ex2f.F90(159): error #7112: This actual argument must not be
> > the name of a procedure. [PETSC_COMM_WORLD]*//*
> > *//* call
> > VecCreateMPI(PETSC_COMM_WORLD,PETSC_DECIDE,m*n,u,ierr)*//*
> > *//*------------------------^*//*
> > *//*ex2f.F90(171): error #6405: The same named entity from
> > different modules and/or program units cannot be referenced.
> > [PETSC_COMM_WORLD]*//*
> > *//* call PetscRandomCreate(PETSC_COMM_WORLD,rctx,ierr)*//*
> > *//*--------------------------------^*//*
> > *//*ex2f.F90(171): error #7112: This actual argument must not be
> > the name of a procedure. [PETSC_COMM_WORLD]*//*
> > *//* call PetscRandomCreate(PETSC_COMM_WORLD,rctx,ierr)*//*
> > *//*--------------------------------^*//*
> > *//*ex2f.F90(193): error #6405: The same named entity from
> > different modules and/or program units cannot be referenced.
> > [PETSC_COMM_WORLD]*//*
> > *//* call KSPCreate(PETSC_COMM_WORLD,ksp,ierr)*//*
> > *//*---------------------^*//*
> > *//*ex2f.F90(193): error #7112: This actual argument must not be
> > the name of a procedure. [PETSC_COMM_WORLD]*//*
> > *//* call KSPCreate(PETSC_COMM_WORLD,ksp,ierr)*//*
> > *//*---------------------^*//*
> > *//*ex2f.F90(319): error #6405: The same named entity from
> > different modules and/or program units cannot be referenced.
> > [PETSC_COMM_WORLD]*//*
> > *//* call MPI_Comm_rank(PETSC_COMM_WORLD,rank,ierr)*//*
> > *//*-------------------------^*//*
> > *//*ex2f.F90(319): error #7112: This actual argument must not be
> > the name of a procedure. [PETSC_COMM_WORLD]*//*
> > *//* call MPI_Comm_rank(PETSC_COMM_WORLD,rank,ierr)*//*
> > *//*-------------------------^*//*
> > *//*compilation aborted for ex2f.F90 (code 1)*//*
> > *//*make: ***
> > [/cygdrive/d/wtay/Downloads/Source_codes/petsc-3.15.0/lib/petsc/conf/test:23:
> > ex2f] Error 1*/
> >
> >
> > I have also attached the "/*make check*/" output. Seems like
> > there's problem with fortran compile.
> >
> > Thank you very much.
> >
> > Yours sincerely,
> >
> > ================================================
> > TAY Wee-Beng 郑伟明 (Zheng Weiming)
> > Personal research webpage: _http://tayweebeng.wixsite.com/website
> > <http://tayweebeng.wixsite.com/website>_
> > Youtube research showcase: _https://goo.gl/PtvdwQ
> > <https://goo.gl/PtvdwQ>_
> > linkedin: _https://www.linkedin.com/in/tay-weebeng
> > <https://www.linkedin.com/in/tay-weebeng>_
> > ================================================
> >
> > On 14/4/2021 3:47 pm, Barry Smith wrote:
> >>
> >> Please send configure.log and make.log and the results of "make
> >> check" so we have the details on the build process.
> >>
> >>> /*No rule to make target
> >>> '/cygdrive/d/Lib/petsc-3.15.0_win64_impi_vs2017/share/petsc/examples/src/ksp/ksp/tutori*//*als/lib/petsc/conf/test'.
> >>> Stop.*/
> >>>
> >> Looks funny; it does not seem to separate the PETSc directory
> >> from its configuration directory appropriately.
> >>
> >> Are you sure
> >>
> >>> /*export PETSC_DIR=`pwd`*//*
> >>> *//*export PETSC_ARCH=petsc-3.15.0_win64_impi_vs2017*/
> >>>
> >> are run in the appropriate directory so that PETSC_DIR is correct.
> >>
> >> Barry
> >>
> >>
> >>
> >>
> >>
> >>
> >>> On Apr 14, 2021, at 2:20 AM, TAY wee-beng <zonexo at gmail.com
> >>> <mailto:zonexo at gmail.com>> wrote:
> >>>
> >>> Hi Mark,
> >>>
> >>> I'm not sure what's wrong.
> >>>
> >>> In VS2017 + Intel oneAPI,
> >>>
> >>> even after adding the full path:
> >>>
> >>> #include
> >>> <D:/Lib/petsc-3.15.0_win64_impi_vs2017/include/petsc/finclude/petscksp.h>
> >>>
> >>> I got a new error:
> >>>
> >>> /*Compiling with Intel® Fortran Compiler Classic 2021.2.0
> >>> [Intel(R) 64]...*//*
> >>> *//*ex2f.F90*//*
> >>> *//*petscksp.h(8): #error: can't find include file:
> >>> petsc/finclude/petscpc.h*//*
> >>> *//*ex2f : error PRJ0019: A tool returned an error code*/
> >>>
> >>> Note that I have also specified the include dir in the properties:
> >>>
> >>> /*Debug/;$(PETSC_DIR);$(PETSC_DIR)/include;$(I_MPI_ONEAPI_ROOT)/include*/
> >>>
> >>> I also tried in cygwin:
> >>>
> >>> /*export PETSC_DIR=`pwd`*//*
> >>> *//*export PETSC_ARCH=petsc-3.15.0_win64_impi_vs2017*//*
> >>> *//*make ex2f*/
> >>>
> >>> I got the error:
> >>>
> >>> /*$ make ex2f*//*
> >>> *//*makefile:41:
> >>> /cygdrive/d/Lib/petsc-3.15.0_win64_impi_vs2017/share/petsc/examples/src/ksp/ksp/tutorials/lib/petsc/conf/te*//*st:
> >>> No such file or directory*//*
> >>> *//*make: *** No rule to make target
> >>> '/cygdrive/d/Lib/petsc-3.15.0_win64_impi_vs2017/share/petsc/examples/src/ksp/ksp/tutori*//*als/lib/petsc/conf/test'.
> >>> Stop.*/
> >>>
> >>> Somehow it just doesn't work. Building the library has no
> >>> problem though.
> >>>
> >>> I wonder what's wrong.
> >>>
> >>>
> >>> Thank you very much.
> >>>
> >>> Yours sincerely,
> >>>
> >>> ================================================
> >>> TAY Wee-Beng 郑伟明 (Zheng Weiming)
> >>> Personal research webpage:
> >>> _http://tayweebeng.wixsite.com/website
> >>> <http://tayweebeng.wixsite.com/website>_
> >>> Youtube research showcase: _https://goo.gl/PtvdwQ
> >>> <https://goo.gl/PtvdwQ>_
> >>> linkedin: _https://www.linkedin.com/in/tay-weebeng
> >>> <https://www.linkedin.com/in/tay-weebeng>_
> >>> ================================================
> >>>
> >>> On 14/4/2021 9:31 am, Mark Adams wrote:
> >>>> PETSc has changed Fortran syntax since v3.9. You should
> >>>> upgrade. Look at examples for how to use modules etc.
> >>>>
> >>>>
> >>>> /*Compiling with Intel® Fortran Compiler Classic 2021.2.0
> >>>> [Intel(R) 64]...*//*
> >>>> *//*global.F90*//*
> >>>> *//*global.F90(3): #error: can't find include file:
> >>>> petsc/finclude/petsc.h*//*
> >>>> *//*global.F90(937): #error: can't find include file:
> >>>> petsc/finclude/petsc.h*/
> >>>>
> >>>>
> >>>> It looks like you might not have your PETSC_ARCH variable set.
> >>>> You should get a full path to /finclude/petsc.h. Look at the
> >>>> compile line.
> >>>>
> >>>> There are PETSc examples that you you can make to see an
> >>>> example of a correct make. For example,
> >>>> > cd petsc/src/ksp/ksp/tutorials
> >>>> > > make ex2f
> >>>>
> >>>> should make an executable and you can look at the compile and
> >>>> link lines, and compare to what you are using.
> >>>>
> >>>> Mark
> >>>>
> >>>>
> >>>> --
> >>>>
> >>>> Thank you very much.
> >>>>
> >>>> Yours sincerely,
> >>>>
> >>>> ================================================
> >>>> TAY Wee-Beng 郑伟明 (Zheng Weiming)
> >>>> Personal research webpage:
> >>>> _http://tayweebeng.wixsite.com/website
> >>>> <http://tayweebeng.wixsite.com/website>_
> >>>> Youtube research showcase: _https://goo.gl/PtvdwQ
> >>>> <https://goo.gl/PtvdwQ>_
> >>>> linkedin: _https://www.linkedin.com/in/tay-weebeng
> >>>> <https://www.linkedin.com/in/tay-weebeng>_
> >>>> ================================================
> >>>>
> >>
>
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