[petsc-users] Can't compile code after upgrading to VS2017 and Intel One API + PETSc 3.15
TAY wee-beng
zonexo at gmail.com
Wed Apr 14 10:36:12 CDT 2021
Hi,
I redo the installation:
/*Now to install the libraries do:*//*
*//*make PETSC_DIR=/cygdrive/d/wtay/Downloads/Source_codes/petsc-3.15.0
PETSC_ARCH=petsc-3.15.0_win64_impi_vs2017 install*//*
*//*=========================================*//*
*//*
*//*DELL-T7610+wtay at DELL-T7610
/cygdrive/d/wtay/Downloads/Source_codes/petsc-3.15.0*//*
*//*$ make
PETSC_DIR=/cygdrive/d/wtay/Downloads/Source_codes/petsc-3.15.0
PETSC_ARCH=petsc-3.15.0_win64_impi_vs2017 install*//*
*//**** Using
PETSC_DIR=/cygdrive/d/wtay/Downloads/Source_codes/petsc-3.15.0
PETSC_ARCH=petsc-3.15.0_win64_impi_vs2017 ****//*
*//**** Installing PETSc at prefix location:
/cygdrive/d/Lib/petsc-3.15.0_win64_impi_vs2017 ****//*
*//*====================================*//*
*//*Install complete.*//*
*//*Now to check if the libraries are working do (in current directory):*//*
*//*make PETSC_DIR=/cygdrive/d/Lib/petsc-3.15.0_win64_impi_vs2017
PETSC_ARCH="" check*//*
*//*====================================*//*
*//*/usr/bin/make --no-print-directory -f makefile
PETSC_ARCH=petsc-3.15.0_win64_impi_vs2017
PETSC_DIR=/cygdrive/d/wtay/Downloads/Source_codes/petsc-3.15.0
mpi4py-install petsc4py-install libmesh-install mfem-insta*//*
*//*ll slepc-install hpddm-install amrex-install bamg-install*//*
*//*make[2]: Nothing to be done for 'mpi4py-install'.*//*
*//*make[2]: Nothing to be done for 'petsc4py-install'.*//*
*//*make[2]: Nothing to be done for 'libmesh-install'.*//*
*//*make[2]: Nothing to be done for 'mfem-install'.*//*
*//*make[2]: Nothing to be done for 'slepc-install'.*//*
*//*make[2]: Nothing to be done for 'hpddm-install'.*//*
*//*make[2]: Nothing to be done for 'amrex-install'.*//*
*//*make[2]: Nothing to be done for 'bamg-install'.*//*
*/
DELL-T7610+wtay at DELL-T7610
/cygdrive/d/wtay/Downloads/Source_codes/petsc-3.15.0
I ran the check:
/*$ make PETSC_DIR=/cygdrive/d/Lib/petsc-3.15.0_win64_impi_vs2017
PETSC_ARCH="" check*//*
*//*/cygdrive/d/Lib/petsc-3.15.0_win64_impi_vs2017//lib/petsc/conf/petscvariables:5:
*** missing separator. Stop.*/
Why is this happening?
Thank you very much.
Yours sincerely,
================================================
TAY Wee-Beng 郑伟明 (Zheng Weiming)
Personal research webpage: _http://tayweebeng.wixsite.com/website_
Youtube research showcase: _https://goo.gl/PtvdwQ_
linkedin: _https://www.linkedin.com/in/tay-weebeng_
================================================
On 14/4/2021 6:01 pm, Mark Adams wrote:
> You have PETSC_ARCH=petsc-3.15.0_win64_impi_vs2017
> I think you use PETSC_ARCH="" for installed libs.
> When you do the install it will tell you exactly what to run to run
> "check". You might double check that .
> Mark
>
> On Wed, Apr 14, 2021 at 4:10 AM TAY wee-beng <zonexo at gmail.com
> <mailto:zonexo at gmail.com>> wrote:
>
> Hi Barry,
>
> Ops, which dir should I run /*export PETSC_DIR=`pwd`*//*
> */
>
> Maybe I ran it wrongly initially at where the lib is stored:
> /*/cygdrive/d/Lib/petsc-3.15.0_win64_impi_vs2017/*//*
> */
>
> My source is at
>
> /*/cygdrive/d/wtay/Downloads/Source_codes/petsc-3.15.0*/
>
> Now I ran:
>
> /*export PETSC_DIR=`pwd`*//*
> *//*cd src/ksp/ksp/tutorials/*//*
> *//*make ex2f*/
>
> /*/cygdrive/d/wtay/Downloads/Source_codes/petsc-3.15.0/lib/petsc/bin/win32fe/win32fe
> ifort -MD -Z7 -fpp -MD -Z7 -fpp
> -I/cygdrive/d/wtay/Downloads/Source_codes/petsc-3.15.0/include
> -I/cygdrive/d/wtay/Downloads/S*//*
> *//*ource_codes/petsc-3.15.0/petsc-3.15.0_win64_impi_vs2017/include
> -I/cygdrive/c/Program\ Files\
> \(x86\)/Intel/oneAPI/mpi/latest/include ex2f.F90
> -R/cygdrive/d/wtay/Downloads/Source_codes/petsc-3.15.0/petsc-3.*//*
> *//*15.0_win64_impi_vs2017/lib
> -L/cygdrive/d/wtay/Downloads/Source_codes/petsc-3.15.0/petsc-3.15.0_win64_impi_vs2017/lib
> -R/cygdrive/d/Lib/petsc-3.15.0_win64_impi_vs2017/lib
> -L/cygdrive/d/Lib/petsc-3.15.0_win64_impi*//*
> *//*_vs2017/lib -lpetsc -lflapack -lfblas /cygdrive/c/Program\
> Files\ \(x86\)/Intel/oneAPI/mpi/latest/lib/debug/impi.lib
> /cygdrive/c/Program\ Files\
> \(x86\)/Intel/oneAPI/mpi/latest/lib/debug/impicxx.lib /cygdrive/c/*//*
> *//*Program\ Files\
> \(x86\)/Intel/oneAPI/mpi/latest/lib/libmpi_ilp64.lib Gdi32.lib
> User32.lib Advapi32.lib Kernel32.lib Ws2_32.lib -o ex2f*//*
> *//*ifort: command line warning #10006: ignoring unknown option
> '/R/cygdrive/d/wtay/Downloads/Source_codes/petsc-3.15.0/petsc-3.15.0_win64_impi_vs2017/lib'*//*
> *//*ifort: command line warning #10006: ignoring unknown option
> '/R/cygdrive/d/Lib/petsc-3.15.0_win64_impi_vs2017/lib'*//*
> *//*ex2f.F90(80): error #6405: The same named entity from
> different modules and/or program units cannot be referenced.
> [PETSC_COMM_WORLD]*//*
> *//* call MPI_Comm_rank(PETSC_COMM_WORLD,rank,ierr)*//*
> *//*-------------------------^*//*
> *//*ex2f.F90(80): error #7112: This actual argument must not be
> the name of a procedure. [PETSC_COMM_WORLD]*//*
> *//* call MPI_Comm_rank(PETSC_COMM_WORLD,rank,ierr)*//*
> *//*-------------------------^*//*
> *//*ex2f.F90(81): error #6405: The same named entity from
> different modules and/or program units cannot be referenced.
> [PETSC_COMM_WORLD]*//*
> *//* call MPI_Comm_size(PETSC_COMM_WORLD,size,ierr)*//*
> *//*-------------------------^*//*
> *//*ex2f.F90(81): error #7112: This actual argument must not be
> the name of a procedure. [PETSC_COMM_WORLD]*//*
> *//* call MPI_Comm_size(PETSC_COMM_WORLD,size,ierr)*//*
> *//*-------------------------^*//*
> *//*ex2f.F90(93): error #6405: The same named entity from
> different modules and/or program units cannot be referenced.
> [PETSC_COMM_WORLD]*//*
> *//* call MatCreate(PETSC_COMM_WORLD,A,ierr)*//*
> *//*---------------------^*//*
> *//*ex2f.F90(93): error #7112: This actual argument must not be
> the name of a procedure. [PETSC_COMM_WORLD]*//*
> *//* call MatCreate(PETSC_COMM_WORLD,A,ierr)*//*
> *//*---------------------^*//*
> *//*ex2f.F90(159): error #6405: The same named entity from
> different modules and/or program units cannot be referenced.
> [PETSC_COMM_WORLD]*//*
> *//* call
> VecCreateMPI(PETSC_COMM_WORLD,PETSC_DECIDE,m*n,u,ierr)*//*
> *//*------------------------^*//*
> *//*ex2f.F90(159): error #7112: This actual argument must not be
> the name of a procedure. [PETSC_COMM_WORLD]*//*
> *//* call
> VecCreateMPI(PETSC_COMM_WORLD,PETSC_DECIDE,m*n,u,ierr)*//*
> *//*------------------------^*//*
> *//*ex2f.F90(171): error #6405: The same named entity from
> different modules and/or program units cannot be referenced.
> [PETSC_COMM_WORLD]*//*
> *//* call PetscRandomCreate(PETSC_COMM_WORLD,rctx,ierr)*//*
> *//*--------------------------------^*//*
> *//*ex2f.F90(171): error #7112: This actual argument must not be
> the name of a procedure. [PETSC_COMM_WORLD]*//*
> *//* call PetscRandomCreate(PETSC_COMM_WORLD,rctx,ierr)*//*
> *//*--------------------------------^*//*
> *//*ex2f.F90(193): error #6405: The same named entity from
> different modules and/or program units cannot be referenced.
> [PETSC_COMM_WORLD]*//*
> *//* call KSPCreate(PETSC_COMM_WORLD,ksp,ierr)*//*
> *//*---------------------^*//*
> *//*ex2f.F90(193): error #7112: This actual argument must not be
> the name of a procedure. [PETSC_COMM_WORLD]*//*
> *//* call KSPCreate(PETSC_COMM_WORLD,ksp,ierr)*//*
> *//*---------------------^*//*
> *//*ex2f.F90(319): error #6405: The same named entity from
> different modules and/or program units cannot be referenced.
> [PETSC_COMM_WORLD]*//*
> *//* call MPI_Comm_rank(PETSC_COMM_WORLD,rank,ierr)*//*
> *//*-------------------------^*//*
> *//*ex2f.F90(319): error #7112: This actual argument must not be
> the name of a procedure. [PETSC_COMM_WORLD]*//*
> *//* call MPI_Comm_rank(PETSC_COMM_WORLD,rank,ierr)*//*
> *//*-------------------------^*//*
> *//*compilation aborted for ex2f.F90 (code 1)*//*
> *//*make: ***
> [/cygdrive/d/wtay/Downloads/Source_codes/petsc-3.15.0/lib/petsc/conf/test:23:
> ex2f] Error 1*/
>
>
> I have also attached the "/*make check*/" output. Seems like
> there's problem with fortran compile.
>
> Thank you very much.
>
> Yours sincerely,
>
> ================================================
> TAY Wee-Beng 郑伟明 (Zheng Weiming)
> Personal research webpage: _http://tayweebeng.wixsite.com/website
> <http://tayweebeng.wixsite.com/website>_
> Youtube research showcase: _https://goo.gl/PtvdwQ
> <https://goo.gl/PtvdwQ>_
> linkedin: _https://www.linkedin.com/in/tay-weebeng
> <https://www.linkedin.com/in/tay-weebeng>_
> ================================================
>
> On 14/4/2021 3:47 pm, Barry Smith wrote:
>>
>> Please send configure.log and make.log and the results of "make
>> check" so we have the details on the build process.
>>
>>> /*No rule to make target
>>> '/cygdrive/d/Lib/petsc-3.15.0_win64_impi_vs2017/share/petsc/examples/src/ksp/ksp/tutori*//*als/lib/petsc/conf/test'.
>>> Stop.*/
>>>
>> Looks funny; it does not seem to separate the PETSc directory
>> from its configuration directory appropriately.
>>
>> Are you sure
>>
>>> /*export PETSC_DIR=`pwd`*//*
>>> *//*export PETSC_ARCH=petsc-3.15.0_win64_impi_vs2017*/
>>>
>> are run in the appropriate directory so that PETSC_DIR is correct.
>>
>> Barry
>>
>>
>>
>>
>>
>>
>>> On Apr 14, 2021, at 2:20 AM, TAY wee-beng <zonexo at gmail.com
>>> <mailto:zonexo at gmail.com>> wrote:
>>>
>>> Hi Mark,
>>>
>>> I'm not sure what's wrong.
>>>
>>> In VS2017 + Intel oneAPI,
>>>
>>> even after adding the full path:
>>>
>>> #include
>>> <D:/Lib/petsc-3.15.0_win64_impi_vs2017/include/petsc/finclude/petscksp.h>
>>>
>>> I got a new error:
>>>
>>> /*Compiling with Intel® Fortran Compiler Classic 2021.2.0
>>> [Intel(R) 64]...*//*
>>> *//*ex2f.F90*//*
>>> *//*petscksp.h(8): #error: can't find include file:
>>> petsc/finclude/petscpc.h*//*
>>> *//*ex2f : error PRJ0019: A tool returned an error code*/
>>>
>>> Note that I have also specified the include dir in the properties:
>>>
>>> /*Debug/;$(PETSC_DIR);$(PETSC_DIR)/include;$(I_MPI_ONEAPI_ROOT)/include*/
>>>
>>> I also tried in cygwin:
>>>
>>> /*export PETSC_DIR=`pwd`*//*
>>> *//*export PETSC_ARCH=petsc-3.15.0_win64_impi_vs2017*//*
>>> *//*make ex2f*/
>>>
>>> I got the error:
>>>
>>> /*$ make ex2f*//*
>>> *//*makefile:41:
>>> /cygdrive/d/Lib/petsc-3.15.0_win64_impi_vs2017/share/petsc/examples/src/ksp/ksp/tutorials/lib/petsc/conf/te*//*st:
>>> No such file or directory*//*
>>> *//*make: *** No rule to make target
>>> '/cygdrive/d/Lib/petsc-3.15.0_win64_impi_vs2017/share/petsc/examples/src/ksp/ksp/tutori*//*als/lib/petsc/conf/test'.
>>> Stop.*/
>>>
>>> Somehow it just doesn't work. Building the library has no
>>> problem though.
>>>
>>> I wonder what's wrong.
>>>
>>>
>>> Thank you very much.
>>>
>>> Yours sincerely,
>>>
>>> ================================================
>>> TAY Wee-Beng 郑伟明 (Zheng Weiming)
>>> Personal research webpage:
>>> _http://tayweebeng.wixsite.com/website
>>> <http://tayweebeng.wixsite.com/website>_
>>> Youtube research showcase: _https://goo.gl/PtvdwQ
>>> <https://goo.gl/PtvdwQ>_
>>> linkedin: _https://www.linkedin.com/in/tay-weebeng
>>> <https://www.linkedin.com/in/tay-weebeng>_
>>> ================================================
>>>
>>> On 14/4/2021 9:31 am, Mark Adams wrote:
>>>> PETSc has changed Fortran syntax since v3.9. You should
>>>> upgrade. Look at examples for how to use modules etc.
>>>>
>>>>
>>>> /*Compiling with Intel® Fortran Compiler Classic 2021.2.0
>>>> [Intel(R) 64]...*//*
>>>> *//*global.F90*//*
>>>> *//*global.F90(3): #error: can't find include file:
>>>> petsc/finclude/petsc.h*//*
>>>> *//*global.F90(937): #error: can't find include file:
>>>> petsc/finclude/petsc.h*/
>>>>
>>>>
>>>> It looks like you might not have your PETSC_ARCH variable set.
>>>> You should get a full path to /finclude/petsc.h. Look at the
>>>> compile line.
>>>>
>>>> There are PETSc examples that you you can make to see an
>>>> example of a correct make. For example,
>>>> > cd petsc/src/ksp/ksp/tutorials
>>>> > make ex2f
>>>>
>>>> should make an executable and you can look at the compile and
>>>> link lines, and compare to what you are using.
>>>>
>>>> Mark
>>>>
>>>>
>>>> --
>>>>
>>>> Thank you very much.
>>>>
>>>> Yours sincerely,
>>>>
>>>> ================================================
>>>> TAY Wee-Beng 郑伟明 (Zheng Weiming)
>>>> Personal research webpage:
>>>> _http://tayweebeng.wixsite.com/website
>>>> <http://tayweebeng.wixsite.com/website>_
>>>> Youtube research showcase: _https://goo.gl/PtvdwQ
>>>> <https://goo.gl/PtvdwQ>_
>>>> linkedin: _https://www.linkedin.com/in/tay-weebeng
>>>> <https://www.linkedin.com/in/tay-weebeng>_
>>>> ================================================
>>>>
>>
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