[petsc-users] Rebuilding libmesh

[Jed Brown]

Alexander Lindsay <alexlindsay239 at gmail.com> writes:

> Does anyone have a suggestion for this compilation error from petscconf.h?
> Sorry this is with a somewhat old PETSc version:
>
> configure:34535: checking whether we can compile a trivial PETSc program
> configure:34564: mpicxx -c  -std=gnu++11

What do you get with `mpicxx --version`?

This is usually a result of configuring PETSc with a different compiler
version than you use to run.

> -I/opt/moose/petsc-3.11.4/mpich-3.3_gcc-9.2.0-opt/include
> -I/opt/moose/petsc-3.11.4/mpich-3.3_gcc-9.2.0-opt//include
> -I/opt/moose/petsc-3.11.4/mpich-3.3_gcc-9.2.0-opt/include
> -I/opt/moose/petsc-3.11.4/mpich-3.3_gcc-9.2.0-opt/include  conftest.cpp >&5
> In file included from
> /opt/moose/petsc-3.11.4/mpich-3.3_gcc-9.2.0-opt/include/petscsys.h:14:0,
>                  from
> /opt/moose/petsc-3.11.4/mpich-3.3_gcc-9.2.0-opt/include/petscbag.h:4,
>                  from
> /opt/moose/petsc-3.11.4/mpich-3.3_gcc-9.2.0-opt/include/petsc.h:5,
>                  from conftest.cpp:144:
> /opt/moose/petsc-3.11.4/mpich-3.3_gcc-9.2.0-opt/include/petscconf.h:85:36:
> error: expected '}' before '__attribute'
>  #define PETSC_DEPRECATED_ENUM(why) __attribute((deprecated))
>                                     ^
> /opt/moose/petsc-3.11.4/mpich-3.3_gcc-9.2.0-opt/include/petscksp.h:430:76:
> note: in expansion of macro 'PETSC_DEPRECATED_ENUM'
>  #define KSP_DIVERGED_PCSETUP_FAILED_DEPRECATED KSP_DIVERGED_PCSETUP_FAILED
> PETSC_DEPRECATED_ENUM("Use KSP_DIVERGED_PC_FAILED (since v3.11)")
>
> ^
> /opt/moose/petsc-3.11.4/mpich-3.3_gcc-9.2.0-opt/include/petscksp.h:452:15:
> note: in expansion of macro 'KSP_DIVERGED_PCSETUP_FAILED_DEPRECATED'
>                KSP_DIVERGED_PCSETUP_FAILED_DEPRECATED  = -11,
>
>
> On Wed, Mar 18, 2020 at 2:55 PM Lin <y7762516 at gmail.com> wrote:
>
>> Hi, all,
>>
>>  I met a problem with
>>
>> error: *** PETSc was not found, but --enable-petsc-required was specified.
>>
>> when I reinstalled MOOSE. However, I had been using MOOSE with no issues
>> previously. Does someone know how to solve it? My system is Ubuntu 18.04.
>>
>> The error is listed as following:
>>
>> Found valid MPI installation...
>>
>> note: using /opt/moose/mpich-3.3/gcc-9.2.0/include/mpi.h
>>
>> checking mpi.h usability... yes
>>
>> checking mpi.h presence... yes
>>
>> checking for mpi.h... yes
>>
>> checking /opt/moose/petsc-3.11.4/mpich-3.3_gcc-9.2.0-opt//include/petscversion.h
>> usability... yes
>>
>> checking /opt/moose/petsc-3.11.4/mpich-3.3_gcc-9.2.0-opt//include/petscversion.h
>> presence... yes
>>
>> checking for /opt/moose/petsc-3.11.4/mpich-3.3_gcc-9.2.0-opt//include/petscversion.h...
>> yes
>>
>> <<< Found PETSc 3.11.4 installation in /opt/moose/petsc-3.11.4/mpich-3.3
>> _gcc-9.2.0-opt ... >>>
>>
>> checking whether we can compile a trivial PETSc program... no
>>
>> checking for TAO support via PETSc... no
>>
>> configure: error: *** PETSc was not found, but --enable-petsc-required
>> was specified.
>> make: *** No targets specified and no makefile found.  Stop.
>>
>>
>>
>> Besides, I attached my libMesh configure log file in the email.
>>
>> Regards,
>> Lin
>>
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>
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