[petsc-users] Rebuilding libmesh

[Alexander Lindsay]

Does anyone have a suggestion for this compilation error from petscconf.h?
Sorry this is with a somewhat old PETSc version:

configure:34535: checking whether we can compile a trivial PETSc program
configure:34564: mpicxx -c  -std=gnu++11
-I/opt/moose/petsc-3.11.4/mpich-3.3_gcc-9.2.0-opt/include
-I/opt/moose/petsc-3.11.4/mpich-3.3_gcc-9.2.0-opt//include
-I/opt/moose/petsc-3.11.4/mpich-3.3_gcc-9.2.0-opt/include
-I/opt/moose/petsc-3.11.4/mpich-3.3_gcc-9.2.0-opt/include  conftest.cpp >&5
In file included from
/opt/moose/petsc-3.11.4/mpich-3.3_gcc-9.2.0-opt/include/petscsys.h:14:0,
                 from
/opt/moose/petsc-3.11.4/mpich-3.3_gcc-9.2.0-opt/include/petscbag.h:4,
                 from
/opt/moose/petsc-3.11.4/mpich-3.3_gcc-9.2.0-opt/include/petsc.h:5,
                 from conftest.cpp:144:
/opt/moose/petsc-3.11.4/mpich-3.3_gcc-9.2.0-opt/include/petscconf.h:85:36:
error: expected '}' before '__attribute'
 #define PETSC_DEPRECATED_ENUM(why) __attribute((deprecated))
                                    ^
/opt/moose/petsc-3.11.4/mpich-3.3_gcc-9.2.0-opt/include/petscksp.h:430:76:
note: in expansion of macro 'PETSC_DEPRECATED_ENUM'
 #define KSP_DIVERGED_PCSETUP_FAILED_DEPRECATED KSP_DIVERGED_PCSETUP_FAILED
PETSC_DEPRECATED_ENUM("Use KSP_DIVERGED_PC_FAILED (since v3.11)")

^
/opt/moose/petsc-3.11.4/mpich-3.3_gcc-9.2.0-opt/include/petscksp.h:452:15:
note: in expansion of macro 'KSP_DIVERGED_PCSETUP_FAILED_DEPRECATED'
               KSP_DIVERGED_PCSETUP_FAILED_DEPRECATED  = -11,


On Wed, Mar 18, 2020 at 2:55 PM Lin <y7762516 at gmail.com> wrote:

> Hi, all,
>
>  I met a problem with
>
> error: *** PETSc was not found, but --enable-petsc-required was specified.
>
> when I reinstalled MOOSE. However, I had been using MOOSE with no issues
> previously. Does someone know how to solve it? My system is Ubuntu 18.04.
>
> The error is listed as following:
>
> Found valid MPI installation...
>
> note: using /opt/moose/mpich-3.3/gcc-9.2.0/include/mpi.h
>
> checking mpi.h usability... yes
>
> checking mpi.h presence... yes
>
> checking for mpi.h... yes
>
> checking /opt/moose/petsc-3.11.4/mpich-3.3_gcc-9.2.0-opt//include/petscversion.h
> usability... yes
>
> checking /opt/moose/petsc-3.11.4/mpich-3.3_gcc-9.2.0-opt//include/petscversion.h
> presence... yes
>
> checking for /opt/moose/petsc-3.11.4/mpich-3.3_gcc-9.2.0-opt//include/petscversion.h...
> yes
>
> <<< Found PETSc 3.11.4 installation in /opt/moose/petsc-3.11.4/mpich-3.3
> _gcc-9.2.0-opt ... >>>
>
> checking whether we can compile a trivial PETSc program... no
>
> checking for TAO support via PETSc... no
>
> configure: error: *** PETSc was not found, but --enable-petsc-required
> was specified.
> make: *** No targets specified and no makefile found.  Stop.
>
>
>
> Besides, I attached my libMesh configure log file in the email.
>
> Regards,
> Lin
>
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