[petsc-users] Question on reverse scatters from VecScatterCreateToAll
Fabian Jakub
Fabian.Jakub at physik.uni-muenchen.de
Fri Jun 5 06:52:20 CDT 2020
Dear Petsc list,
I have a question regarding reverse vec-scatters:
I have a shared memory solver that I want to use on a distributed DMDA
and average its results.
The shared mem solver needs some of the global state.
So I want to create a full copy of a global vec on each master rank of a
machine, compute some result
and average the results back into the global vec.
For example: the parallel layout for a global vector is
3 ranks in comm_world, each with Ndof = 6, so global size is 18
Then I create a mpi sub communicator with MPI_COMM_TYPE_SHARED
Then I create a local vec on each rank, with sizes 9 on each rank_0 on
the sub comm, size 0 otherwise
if ( sub_id == 0 ) then
call VecGetSize(gvec, Nlocal, ierr); call CHKERR(ierr)
else
Nlocal = 0
endif
call VecCreateSeq(PETSC_COMM_SELF, Nlocal, lvec, ierr)
This yields for example (first 2 ranks in a shared mem subcomm, 3rd rank
on another machine):
Global rank_id | sub_rank_id | local_size_gvec | local_size_lvec
0 | 0 |
6 | 18
1 | 1 |
6 | 0
2 | 0 |
6 | 18
To copy the global vec on each shared mem master, I do:
ISCreateStride(PETSC_COMM_SELF, Nlocal, 0, 1, is, ierr)
VecScatterCreate(gvec, is, lvec, is, ctx, ierr)
VecScatterBegin(ctx, gvec, lvec, INSERT_VALUES, SCATTER_FORWARD, ierr)
VecScatterEnd (ctx, gvec, lvec, INSERT_VALUES, SCATTER_FORWARD, ierr)
That works fine.
Then I want to do the reverse, i.e. add all values from the local vec to
the global vec on comm_world to generate the average of the results.
I tried:
VecSet(gvec, zero, ierr)
VecScatterBegin(ctx, gvec, lvec, ADD_VALUES, SCATTER_REVERSE, ierr)
I was hoping to get the sum of svec in the global vec, so that gvec /
comm_size(sub_comm_id==0) gives the mean.
However, I get the following error:
Nonconforming object sizes
Vector wrong size 18 for scatter 6 (scatter reverse and vector to != ctx
from size)
Going with the same approach with VecScatterCreateToAll
<https://www.mcs.anl.gov/petsc/petsc-current/docs/manualpages/Vec/VecScatterCreateToAll.html#VecScatterCreateToAll>
leads to the same issue.
Do you have suggestions on how I could/should achieve it?
Many thanks!
Fabian
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://lists.mcs.anl.gov/pipermail/petsc-users/attachments/20200605/5d3c0871/attachment.html>
-------------- next part --------------
A non-text attachment was scrubbed...
Name: signature.asc
Type: application/pgp-signature
Size: 659 bytes
Desc: OpenPGP digital signature
URL: <http://lists.mcs.anl.gov/pipermail/petsc-users/attachments/20200605/5d3c0871/attachment.sig>
More information about the petsc-users
mailing list