[petsc-users] Compile petsc using intel mpi

[Matthew Knepley]

On Thu, Nov 29, 2018 at 4:23 AM Edoardo alinovi <edoardo.alinovi at gmail.com>
wrote:

> Hello guys,
>
> thank you very much for you suggestions and sorry for getting back you
> late. Unfortunately, actually my attempts to compile with intel are not
> successful.
>
> Here my command:
>

Do NOT sudo the configure. This is really dangerous, and as you see 'root'
has a different path than you do. Run configure normally
and make, and only use 'sudo' for 'make install'.

  Thanks,

     Matt


> sudo ./configure --prefix=/home/edo/software/petsc-3.10.2
> PETSC_ARCH=arch-intel-opt --with-cc=mpiicc --with-cxx=mpiiccp
> --with-fc=mpiifort FOPTFLAGS='-O3' COPTFLAGS='-O3' CXXOPTFLAGS='-O3'
> --with-blas-lapack-dir=/home/edo/intel/mkl/lib/intel64/ --with-debugging=no
> --download-fblaslapack=1 --download-superlu_dist --download-mumps
> --download-hypre --download-metis --download-parmetis
>
> The log file states that:
>
> ------------------ LOG ------------------
>
> TEST checkCCompiler from
> config.setCompilers(/home/edo/software/petsc_intel/config/BuildSystem/config/setCompilers.py:587)
> TESTING: checkCCompiler from
> config.setCompilers(config/BuildSystem/config/setCompilers.py:587)
>   Locate a functional C compiler
> Checking for program /usr/sbin/mpiicc...not found
> Checking for program /usr/bin/mpiicc...not found
> Checking for program /sbin/mpiicc...not found
> Checking for program /bin/mpiicc...not found
> Checking for program
> /home/edo/software/petsc_intel/lib/petsc/bin/win32fe/mpiicc...not found
>
> *******************************************************************************
>          UNABLE to CONFIGURE with GIVEN OPTIONS    (see configure.log for
> details):
>
> -------------------------------------------------------------------------------
> C compiler you provided with -with-cc=mpiicc does not work.
>
> ------------------------------------
>
> It seems that petsc is not able to find mpiicc. However, the path to intel
> is well defined in my .bashrc and I can easily compile a test file with
> those compiler.
>
> if I put the full path in --with-cc= ...  then I get:
>
> ------------------ LOG ------------------
>
> TEST checkCCompiler from
> config.setCompilers(/home/edo/software/petsc_intel/config/BuildSystem/config/setCompilers.py:587)
> TESTING: checkCCompiler from
> config.setCompilers(config/BuildSystem/config/setCompilers.py:587)
>   Locate a functional C compiler
> Checking for program
> /home/edo/intel/compilers_and_libraries_2019/linux/mpi/intel64/bin/mpiicc...found
>                 Defined make macro "CC" to
> "/home/edo/intel/compilers_and_libraries_2019/linux/mpi/intel64/bin/mpiicc"
>                 Pushing language C
>                             All intermediate test results are stored in
> /tmp/petsc-ZLGfap
>                           All intermediate test results are stored in
> /tmp/petsc-ZLGfap/config.setCompilers
> Executing:
> /home/edo/intel/compilers_and_libraries_2019/linux/mpi/intel64/bin/mpiicc
> -c -o /tmp/petsc-ZLGfap/config.setCompilers/conftest.o
> -I/tmp/petsc-ZLGfap/config.setCompilers
>  /tmp/petsc-ZLGfap/config.setCompilers/conftest.c
> Possible ERROR while running compiler: exit code 32512
> stderr:
> /home/edo/intel/compilers_and_libraries_2019/linux/mpi/intel64/bin/mpiicc:
> line 557: icc: command not found
> Source:
> #include "confdefs.h"
> #include "conffix.h"
>
> int main() {
> ;
>   return 0;
> }
>                 Popping language C
>             Error testing C compiler: Cannot compile C with
> /home/edo/intel/compilers_and_libraries_2019/linux/mpi/intel64/bin/mpiicc.
>               Deleting "CC"
>
> ------------------------------------
>
> Do you see any error in my setup?
>
> Thank you very much!
>
> ------
>
> Edoardo Alinovi, Ph.D.
>
> DICCA, Scuola Politecnica,
> Universita' degli Studi di Genova,
> 1, via Montallegro,
> 16145 Genova, Italy
>
>
> Il giorno mar 27 nov 2018 alle ore 17:16 Matthew Knepley <
> knepley at gmail.com> ha scritto:
>
>> On Tue, Nov 27, 2018 at 6:25 AM Edoardo alinovi via petsc-users <
>> petsc-users at mcs.anl.gov> wrote:
>>
>>> Dear users,
>>>
>>> I have installed intel parallel studio on my workstation and  thus I
>>> would like to take advantage of intel compiler.
>>>
>>> Before messing up my installation, have you got some guidelines to
>>> survive at this attempt? I have found here in the mailing list the
>>> following instructions:
>>>
>>> --with-cc=icc --with-fc=ifort --with-mpi-include=/path-to-intel
>>> --with-mpi-lib=/path-to-intel
>>>
>>
>> Yes, this looks right.
>>
>>
>>> Are they correct?
>>>
>>> Also I have an already existing and clean installation of petsc using
>>> openmpi. I would like to retain this installtion since it is working very
>>> well and switching between the two  somehow. Any tips on this?
>>>
>>
>> When you do the Intel configuration, use a different name like
>> --PETSC_ARCH=arch-intelps-opt
>>
>>   Thanks,
>>
>>     Matt
>>
>>
>>> I will never stop to say thank you for your precious support!
>>>
>>> Edoardo
>>>
>>> ------
>>>
>>> Edoardo Alinovi, Ph.D.
>>>
>>> DICCA, Scuola Politecnica,
>>> Universita' degli Studi di Genova,
>>> 1, via Montallegro,
>>> 16145 Genova, Italy
>>>
>>>
>>>
>>
>> --
>> What most experimenters take for granted before they begin their
>> experiments is infinitely more interesting than any results to which their
>> experiments lead.
>> -- Norbert Wiener
>>
>> https://www.cse.buffalo.edu/~knepley/
>> <http://www.cse.buffalo.edu/~knepley/>
>>
>

-- 
What most experimenters take for granted before they begin their
experiments is infinitely more interesting than any results to which their
experiments lead.
-- Norbert Wiener

https://www.cse.buffalo.edu/~knepley/ <http://www.cse.buffalo.edu/~knepley/>
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