[petsc-users] Could not execute "['git', 'rev-parse', '--git-dir']"

[Fande Kong]

The default git gives me:

*Could not execute "['git', 'rev-parse', '--git-dir']"*

when I am configuring PETSc.

The manually loaded *gits*  work just fine.


Fande,

On Wed, Apr 4, 2018 at 5:04 PM, Garvey, Cormac T <cormac.garvey at inl.gov>
wrote:

> I though it was fixed, yes I will look into it again.
>
> Do you get an error just doing a git clone on falcon1 and falcon2?
>
> On Wed, Apr 4, 2018 at 4:48 PM, Kong, Fande <fande.kong at inl.gov> wrote:
>
>> module load git/2.16.2-GCCcore-5.4.0"  also works.
>>
>> Could you somehow make the default git work as well? Hence we do not need
>> to have this extra "module load for git"
>>
>> Fande,
>>
>> On Wed, Apr 4, 2018 at 4:43 PM, Kong, Fande <fande.kong at inl.gov> wrote:
>>
>>> Thanks, Cormac,
>>>
>>> *module load git/1.8.5.2-GCC-4.8.3 *
>>>
>>> works for me.
>>>
>>> Did not try "module load git/2.16.2-GCCcore-5.4.0" yet.
>>>
>>> I will try, and get it back here.
>>>
>>>
>>>
>>> Fande
>>>
>>> On Wed, Apr 4, 2018 at 4:39 PM, Garvey, Cormac T <cormac.garvey at inl.gov>
>>> wrote:
>>>
>>>>
>>>> We needed to rebuilt git on the INL falcon cluster because github
>>>> server changed such that it no longer accepted TLSv1.
>>>>
>>>> The default git on the falcon cluster /usr/bin/git is just a wrapper
>>>> script, so users would not need to load any modules to
>>>> use git.
>>>>
>>>> When you load load git on falcon1 or falcon2 does it still fail?
>>>>
>>>> module load git/2.16.2-GCCcore-5.4.0
>>>>
>>>> Thanks,
>>>> Cormac.
>>>>
>>>>
>>>>
>>>> On Wed, Apr 4, 2018 at 4:28 PM, Kong, Fande <fande.kong at inl.gov> wrote:
>>>>
>>>>> Hi Cormac,
>>>>>
>>>>> Do you know anything on "git"? How did you guys build git on the
>>>>> falcon1?  The default git on Falcon1 does not work with petsc any more.
>>>>>
>>>>>
>>>>> Fande,
>>>>>
>>>>>
>>>>>
>>>>> On Wed, Apr 4, 2018 at 4:20 PM, Satish Balay <balay at mcs.anl.gov>
>>>>> wrote:
>>>>>
>>>>>> Ok - I don't think I have access to this OS.
>>>>>>
>>>>>> And I see its from 2009 [sure its enterprise os - with regular
>>>>>> backport updates]
>>>>>>
>>>>>> But its wierd that you have such a new version of git at /usr/bin/git
>>>>>>
>>>>>> From what we know so far - the problem appears to be some bad
>>>>>> interaction of python-2.6 with this old OS [i.e old glibc etc..] - and
>>>>>> this new git version [binary built locally or on a different OS and
>>>>>> installed locally ?].
>>>>>>
>>>>>> Satish
>>>>>>
>>>>>> On Wed, 4 Apr 2018, Kong, Fande wrote:
>>>>>>
>>>>>> >  moose]$ uname -a
>>>>>> > Linux falcon1 3.0.101-108.13-default #1 SMP Wed Oct 11 12:30:40 UTC
>>>>>> 2017
>>>>>> > (294ccfe) x86_64 x86_64 x86_64 GNU/Linux
>>>>>> >
>>>>>> >
>>>>>> > moose]$ lsb_release -a
>>>>>> > LSB Version:
>>>>>> > core-2.0-noarch:core-3.2-noarch:core-4.0-noarch:core-2.0-x86
>>>>>> _64:core-3.2-x86_64:core-4.0-x86_64:desktop-4.0-amd64:deskto
>>>>>> p-4.0-noarch:graphics-2.0-amd64:graphics-2.0-noarch:graphics
>>>>>> -3.2-amd64:graphics-3.2-noarch:graphics-4.0-amd64:graphics-4.0-noarch
>>>>>> > Distributor ID:    SUSE LINUX
>>>>>> > Description:    SUSE Linux Enterprise Server 11 (x86_64)
>>>>>> > Release:    11
>>>>>> > Codename:    n/a
>>>>>> >
>>>>>> >
>>>>>> >
>>>>>> > On Wed, Apr 4, 2018 at 4:08 PM, Satish Balay <balay at mcs.anl.gov>
>>>>>> wrote:
>>>>>> >
>>>>>> > > On Wed, 4 Apr 2018, Satish Balay wrote:
>>>>>> > >
>>>>>> > > > On Wed, 4 Apr 2018, Satish Balay wrote:
>>>>>> > > >
>>>>>> > > > > was your '2.16.2' version installed from source?
>>>>>> > > >
>>>>>> > > > >>>
>>>>>> > > > Checking for program /usr/bin/git...found
>>>>>> > > >                 Defined make macro "GIT" to "git"
>>>>>> > > > Executing: git --version
>>>>>> > > > stdout: git version 2.16.2
>>>>>> > > > <<<<
>>>>>> > > >
>>>>>> > > > I gues its the OS default package
>>>>>> > > >
>>>>>> > > > >>>>>
>>>>>> > > > Machine platform:
>>>>>> > > > ('Linux', 'falcon1', '3.0.101-108.13-default', '#1 SMP Wed Oct
>>>>>> 11
>>>>>> > > 12:30:40 UTC 2017 (294ccfe)', 'x86_64', 'x86_64')
>>>>>> > > > Python version:
>>>>>> > > > 2.6.9 (unknown, Aug  5 2016, 11:15:31)
>>>>>> > > > [GCC 4.3.4 [gcc-4_3-branch revision 152973]]
>>>>>> > > > <<<<
>>>>>> > > >
>>>>>> > > > What OS/version is on this machine? I can try reproducing in a
>>>>>> VM
>>>>>> > >
>>>>>> > > It is strange that the kernel is old [3.0 - perhaps LTS OS] ,
>>>>>> python is
>>>>>> > > old [2.6] - but git is new? [2.16?]
>>>>>> > >
>>>>>> > > https://urldefense.proofpoint.com/v2/url?u=https-3A__
>>>>>> > > mirrors.edge.kernel.org_pub_software_scm_git_&d=DwIBAg&c=
>>>>>> > > 54IZrppPQZKX9mLzcGdPfFD1hxrcB__aEkJFOKJFd00&r=DUUt3SRGI0_
>>>>>> > > JgtNaS3udV68GRkgV4ts7XKfj2opmiCY&m=WF6ZxIh9Z9Hh2kYY0w70aNrgfPicp6
>>>>>> > > kgIh5BvezPiEY&s=KWMsO7XC0-pQuQ_mD03tNJWEpxSTATlZW_DmX0QofGw&e=
>>>>>> > > git-2.16.2.tar.gz                                  16-Feb-2018
>>>>>> 17:48
>>>>>> > > 7M
>>>>>> > >
>>>>>> > > Satish
>>>>>> > >
>>>>>> >
>>>>>>
>>>>>>
>>>>>
>>>>
>>>>
>>>> --
>>>> Cormac Garvey
>>>> HPC Software Consultant
>>>> Scientific Computing
>>>> Idaho National Laboratory
>>>> Ph: 208-526-6294
>>>>
>>>>
>>>
>>
>
>
> --
> Cormac Garvey
> HPC Software Consultant
> Scientific Computing
> Idaho National Laboratory
> Ph: 208-526-6294
>
>
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