[petsc-users] Could not execute "['git', 'rev-parse', '--git-dir']"

Wed Apr 4 17:48:56 CDT 2018

module load git/2.16.2-GCCcore-5.4.0"  also works.

Could you somehow make the default git work as well? Hence we do not need
to have this extra "module load for git"

Fande,

On Wed, Apr 4, 2018 at 4:43 PM, Kong, Fande <fande.kong at inl.gov> wrote:

> Thanks, Cormac,
>
> *module load git/1.8.5.2-GCC-4.8.3 *
>
> works for me.
>
> Did not try "module load git/2.16.2-GCCcore-5.4.0" yet.
>
> I will try, and get it back here.
>
>
>
> Fande
>
> On Wed, Apr 4, 2018 at 4:39 PM, Garvey, Cormac T <cormac.garvey at inl.gov>
> wrote:
>
>>
>> We needed to rebuilt git on the INL falcon cluster because github server
>> changed such that it no longer accepted TLSv1.
>>
>> The default git on the falcon cluster /usr/bin/git is just a wrapper
>> script, so users would not need to load any modules to
>> use git.
>>
>> When you load load git on falcon1 or falcon2 does it still fail?
>>
>> module load git/2.16.2-GCCcore-5.4.0
>>
>> Thanks,
>> Cormac.
>>
>>
>>
>> On Wed, Apr 4, 2018 at 4:28 PM, Kong, Fande <fande.kong at inl.gov> wrote:
>>
>>> Hi Cormac,
>>>
>>> Do you know anything on "git"? How did you guys build git on the
>>> falcon1?  The default git on Falcon1 does not work with petsc any more.
>>>
>>>
>>> Fande,
>>>
>>>
>>>
>>> On Wed, Apr 4, 2018 at 4:20 PM, Satish Balay <balay at mcs.anl.gov> wrote:
>>>
>>>> Ok - I don't think I have access to this OS.
>>>>
>>>> And I see its from 2009 [sure its enterprise os - with regular backport
>>>> updates]
>>>>
>>>> But its wierd that you have such a new version of git at /usr/bin/git
>>>>
>>>> From what we know so far - the problem appears to be some bad
>>>> interaction of python-2.6 with this old OS [i.e old glibc etc..] - and
>>>> this new git version [binary built locally or on a different OS and
>>>> installed locally ?].
>>>>
>>>> Satish
>>>>
>>>> On Wed, 4 Apr 2018, Kong, Fande wrote:
>>>>
>>>> >  moose]$ uname -a
>>>> > Linux falcon1 3.0.101-108.13-default #1 SMP Wed Oct 11 12:30:40 UTC
>>>> 2017
>>>> > (294ccfe) x86_64 x86_64 x86_64 GNU/Linux
>>>> >
>>>> >
>>>> > moose]$ lsb_release -a
>>>> > LSB Version:
>>>> > core-2.0-noarch:core-3.2-noarch:core-4.0-noarch:core-2.0-x86
>>>> _64:core-3.2-x86_64:core-4.0-x86_64:desktop-4.0-amd64:deskto
>>>> p-4.0-noarch:graphics-2.0-amd64:graphics-2.0-noarch:graphics
>>>> -3.2-amd64:graphics-3.2-noarch:graphics-4.0-amd64:graphics-4.0-noarch
>>>> > Distributor ID:    SUSE LINUX
>>>> > Description:    SUSE Linux Enterprise Server 11 (x86_64)
>>>> > Release:    11
>>>> > Codename:    n/a
>>>> >
>>>> >
>>>> >
>>>> > On Wed, Apr 4, 2018 at 4:08 PM, Satish Balay <balay at mcs.anl.gov>
>>>> wrote:
>>>> >
>>>> > > On Wed, 4 Apr 2018, Satish Balay wrote:
>>>> > >
>>>> > > > On Wed, 4 Apr 2018, Satish Balay wrote:
>>>> > > >
>>>> > > > > was your '2.16.2' version installed from source?
>>>> > > >
>>>> > > > >>>
>>>> > > > Checking for program /usr/bin/git...found
>>>> > > >                 Defined make macro "GIT" to "git"
>>>> > > > Executing: git --version
>>>> > > > stdout: git version 2.16.2
>>>> > > > <<<<
>>>> > > >
>>>> > > > I gues its the OS default package
>>>> > > >
>>>> > > > >>>>>
>>>> > > > Machine platform:
>>>> > > > ('Linux', 'falcon1', '3.0.101-108.13-default', '#1 SMP Wed Oct 11
>>>> > > 12:30:40 UTC 2017 (294ccfe)', 'x86_64', 'x86_64')
>>>> > > > Python version:
>>>> > > > 2.6.9 (unknown, Aug  5 2016, 11:15:31)
>>>> > > > [GCC 4.3.4 [gcc-4_3-branch revision 152973]]
>>>> > > > <<<<
>>>> > > >
>>>> > > > What OS/version is on this machine? I can try reproducing in a VM
>>>> > >
>>>> > > It is strange that the kernel is old [3.0 - perhaps LTS OS] ,
>>>> python is
>>>> > > old [2.6] - but git is new? [2.16?]
>>>> > >
>>>> > > https://urldefense.proofpoint.com/v2/url?u=https-3A__
>>>> > > mirrors.edge.kernel.org_pub_software_scm_git_&d=DwIBAg&c=
>>>> > > 54IZrppPQZKX9mLzcGdPfFD1hxrcB__aEkJFOKJFd00&r=DUUt3SRGI0_
>>>> > > JgtNaS3udV68GRkgV4ts7XKfj2opmiCY&m=WF6ZxIh9Z9Hh2kYY0w70aNrgfPicp6
>>>> > > kgIh5BvezPiEY&s=KWMsO7XC0-pQuQ_mD03tNJWEpxSTATlZW_DmX0QofGw&e=
>>>> > > git-2.16.2.tar.gz                                  16-Feb-2018 17:48
>>>> > > 7M
>>>> > >
>>>> > > Satish
>>>> > >
>>>> >
>>>>
>>>>
>>>
>>
>>
>> --
>> Cormac Garvey
>> HPC Software Consultant
>> Scientific Computing
>> Idaho National Laboratory
>> Ph: 208-526-6294
>>
>>
>
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