[petsc-users] Could not execute "['git', 'rev-parse', '--git-dir']"

[Kong, Fande]

Thanks, Cormac,

*module load git/1.8.5.2-GCC-4.8.3 *

works for me.

Did not try "module load git/2.16.2-GCCcore-5.4.0" yet.

I will try, and get it back here.



Fande

On Wed, Apr 4, 2018 at 4:39 PM, Garvey, Cormac T <cormac.garvey at inl.gov>
wrote:

>
> We needed to rebuilt git on the INL falcon cluster because github server
> changed such that it no longer accepted TLSv1.
>
> The default git on the falcon cluster /usr/bin/git is just a wrapper
> script, so users would not need to load any modules to
> use git.
>
> When you load load git on falcon1 or falcon2 does it still fail?
>
> module load git/2.16.2-GCCcore-5.4.0
>
> Thanks,
> Cormac.
>
>
>
> On Wed, Apr 4, 2018 at 4:28 PM, Kong, Fande <fande.kong at inl.gov> wrote:
>
>> Hi Cormac,
>>
>> Do you know anything on "git"? How did you guys build git on the
>> falcon1?  The default git on Falcon1 does not work with petsc any more.
>>
>>
>> Fande,
>>
>>
>>
>> On Wed, Apr 4, 2018 at 4:20 PM, Satish Balay <balay at mcs.anl.gov> wrote:
>>
>>> Ok - I don't think I have access to this OS.
>>>
>>> And I see its from 2009 [sure its enterprise os - with regular backport
>>> updates]
>>>
>>> But its wierd that you have such a new version of git at /usr/bin/git
>>>
>>> From what we know so far - the problem appears to be some bad
>>> interaction of python-2.6 with this old OS [i.e old glibc etc..] - and
>>> this new git version [binary built locally or on a different OS and
>>> installed locally ?].
>>>
>>> Satish
>>>
>>> On Wed, 4 Apr 2018, Kong, Fande wrote:
>>>
>>> >  moose]$ uname -a
>>> > Linux falcon1 3.0.101-108.13-default #1 SMP Wed Oct 11 12:30:40 UTC
>>> 2017
>>> > (294ccfe) x86_64 x86_64 x86_64 GNU/Linux
>>> >
>>> >
>>> > moose]$ lsb_release -a
>>> > LSB Version:
>>> > core-2.0-noarch:core-3.2-noarch:core-4.0-noarch:core-2.0-x86
>>> _64:core-3.2-x86_64:core-4.0-x86_64:desktop-4.0-amd64:deskt
>>> op-4.0-noarch:graphics-2.0-amd64:graphics-2.0-noarch:graphic
>>> s-3.2-amd64:graphics-3.2-noarch:graphics-4.0-amd64:graphics-4.0-noarch
>>> > Distributor ID:    SUSE LINUX
>>> > Description:    SUSE Linux Enterprise Server 11 (x86_64)
>>> > Release:    11
>>> > Codename:    n/a
>>> >
>>> >
>>> >
>>> > On Wed, Apr 4, 2018 at 4:08 PM, Satish Balay <balay at mcs.anl.gov>
>>> wrote:
>>> >
>>> > > On Wed, 4 Apr 2018, Satish Balay wrote:
>>> > >
>>> > > > On Wed, 4 Apr 2018, Satish Balay wrote:
>>> > > >
>>> > > > > was your '2.16.2' version installed from source?
>>> > > >
>>> > > > >>>
>>> > > > Checking for program /usr/bin/git...found
>>> > > >                 Defined make macro "GIT" to "git"
>>> > > > Executing: git --version
>>> > > > stdout: git version 2.16.2
>>> > > > <<<<
>>> > > >
>>> > > > I gues its the OS default package
>>> > > >
>>> > > > >>>>>
>>> > > > Machine platform:
>>> > > > ('Linux', 'falcon1', '3.0.101-108.13-default', '#1 SMP Wed Oct 11
>>> > > 12:30:40 UTC 2017 (294ccfe)', 'x86_64', 'x86_64')
>>> > > > Python version:
>>> > > > 2.6.9 (unknown, Aug  5 2016, 11:15:31)
>>> > > > [GCC 4.3.4 [gcc-4_3-branch revision 152973]]
>>> > > > <<<<
>>> > > >
>>> > > > What OS/version is on this machine? I can try reproducing in a VM
>>> > >
>>> > > It is strange that the kernel is old [3.0 - perhaps LTS OS] , python
>>> is
>>> > > old [2.6] - but git is new? [2.16?]
>>> > >
>>> > > https://urldefense.proofpoint.com/v2/url?u=https-3A__
>>> > > mirrors.edge.kernel.org_pub_software_scm_git_&d=DwIBAg&c=
>>> > > 54IZrppPQZKX9mLzcGdPfFD1hxrcB__aEkJFOKJFd00&r=DUUt3SRGI0_
>>> > > JgtNaS3udV68GRkgV4ts7XKfj2opmiCY&m=WF6ZxIh9Z9Hh2kYY0w70aNrgfPicp6
>>> > > kgIh5BvezPiEY&s=KWMsO7XC0-pQuQ_mD03tNJWEpxSTATlZW_DmX0QofGw&e=
>>> > > git-2.16.2.tar.gz                                  16-Feb-2018 17:48
>>> > > 7M
>>> > >
>>> > > Satish
>>> > >
>>> >
>>>
>>>
>>
>
>
> --
> Cormac Garvey
> HPC Software Consultant
> Scientific Computing
> Idaho National Laboratory
> Ph: 208-526-6294
>
>
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