[petsc-users] mesh refinement PETSc3.5.4 with HYPRE
Satish Balay
balay at mcs.anl.gov
Fri Sep 29 20:31:21 CDT 2017
Most of this is from openmpi. Its best to use --download-mpich
for valgrind clean mpi as mentioned below.
http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind
[attempting to remove openmpi messages] - all messages below appear to
be from your appliation code. And I don't see any messages from PETSc
code in this log.
Once there is memory corruption we get random behavior from
application. So its best to fix all these issues and make this
application valgrind clean.
Satish
On Sat, 30 Sep 2017, Hao Zhang wrote:
<snip>
> ==31497== Invalid write of size 8
> ==31497== at 0x643685: level_wave_func_Meniscus (imkcurve.c:1826)
> ==31497== by 0x65299B: assign_two_comp_domain (imksurf.c:2046)
> ==31497== by 0x64623B: make_level_surface (imksurf.c:245)
> ==31497== by 0x5458AF: FT_InitIntfc3d (finit.c:2137)
> ==31497== by 0x544CA3: FT_InitIntfc (finit.c:1853)
> ==31497== by 0x40C072: main (iFluid.cpp:218)
> ==31497== Address 0x7fe859c38 is on thread 1's stack
> ==31497==
> ==31497== Invalid write of size 8
> ==31497== at 0x64368C: level_wave_func_Meniscus (imkcurve.c:1826)
> ==31497== by 0x65299B: assign_two_comp_domain (imksurf.c:2046)
> ==31497== by 0x64623B: make_level_surface (imksurf.c:245)
> ==31497== by 0x5458AF: FT_InitIntfc3d (finit.c:2137)
> ==31497== by 0x544CA3: FT_InitIntfc (finit.c:1853)
> ==31497== by 0x40C072: main (iFluid.cpp:218)
> ==31497== Address 0x7fe859c30 is on thread 1's stack
> ==31497==
> ==31497== Invalid read of size 8
> ==31497== at 0x643693: level_wave_func_Meniscus (imkcurve.c:1831)
> ==31497== by 0x65299B: assign_two_comp_domain (imksurf.c:2046)
> ==31497== by 0x64623B: make_level_surface (imksurf.c:245)
> ==31497== by 0x5458AF: FT_InitIntfc3d (finit.c:2137)
> ==31497== by 0x544CA3: FT_InitIntfc (finit.c:1853)
> ==31497== by 0x40C072: main (iFluid.cpp:218)
> ==31497== Address 0x7fe859c38 is on thread 1's stack
> ==31497==
> ==31497== Invalid write of size 8
> ==31497== at 0x64372D: level_wave_func_Meniscus (imkcurve.c:1848)
> ==31497== by 0x65299B: assign_two_comp_domain (imksurf.c:2046)
> ==31497== by 0x64623B: make_level_surface (imksurf.c:245)
> ==31497== by 0x5458AF: FT_InitIntfc3d (finit.c:2137)
> ==31497== by 0x544CA3: FT_InitIntfc (finit.c:1853)
> ==31497== by 0x40C072: main (iFluid.cpp:218)
> ==31497== Address 0x7fe859c18 is on thread 1's stack
> ==31497==
> ==31497== Invalid read of size 8
> ==31497== at 0x7ED3127: tan (in /lib64/libm-2.12.so)
> ==31497== by 0x65299B: assign_two_comp_domain (imksurf.c:2046)
> ==31497== by 0x64623B: make_level_surface (imksurf.c:245)
> ==31497== by 0x5458AF: FT_InitIntfc3d (finit.c:2137)
> ==31497== by 0x544CA3: FT_InitIntfc (finit.c:1853)
> ==31497== by 0x40C072: main (iFluid.cpp:218)
> ==31497== Address 0x7fe859c18 is on thread 1's stack
> ==31497==
> ==31497== Invalid read of size 8
> ==31497== at 0x643755: level_wave_func_Meniscus (imkcurve.c:1853)
> ==31497== by 0x65299B: assign_two_comp_domain (imksurf.c:2046)
> ==31497== by 0x64623B: make_level_surface (imksurf.c:245)
> ==31497== by 0x5458AF: FT_InitIntfc3d (finit.c:2137)
> ==31497== by 0x544CA3: FT_InitIntfc (finit.c:1853)
> ==31497== by 0x40C072: main (iFluid.cpp:218)
> ==31497== Address 0x7fe859c30 is on thread 1's stack
> ==31497==
> ==31497== Invalid read of size 8
> ==31497== at 0x643765: level_wave_func_Meniscus (imkcurve.c:1854)
> ==31497== by 0x65299B: assign_two_comp_domain (imksurf.c:2046)
> ==31497== by 0x64623B: make_level_surface (imksurf.c:245)
> ==31497== by 0x5458AF: FT_InitIntfc3d (finit.c:2137)
> ==31497== by 0x544CA3: FT_InitIntfc (finit.c:1853)
> ==31497== by 0x40C072: main (iFluid.cpp:218)
> ==31497== Address 0x7fe859c30 is on thread 1's stack
> ==31497==
> ==31497== Invalid read of size 8
> ==31497== at 0x643A7F: level_wave_func_Meniscus (imkcurve.c:1944)
> ==31497== by 0x65299B: assign_two_comp_domain (imksurf.c:2046)
> ==31497== by 0x64623B: make_level_surface (imksurf.c:245)
> ==31497== by 0x5458AF: FT_InitIntfc3d (finit.c:2137)
> ==31497== by 0x544CA3: FT_InitIntfc (finit.c:1853)
> ==31497== by 0x40C072: main (iFluid.cpp:218)
> ==31497== Address 0x7fe859c30 is on thread 1's stack
> ==31497==
> ==31497== Invalid write of size 8
> ==31497== at 0x643A92: level_wave_func_Meniscus (imkcurve.c:1944)
> ==31497== by 0x65299B: assign_two_comp_domain (imksurf.c:2046)
> ==31497== by 0x64623B: make_level_surface (imksurf.c:245)
> ==31497== by 0x5458AF: FT_InitIntfc3d (finit.c:2137)
> ==31497== by 0x544CA3: FT_InitIntfc (finit.c:1853)
> ==31497== by 0x40C072: main (iFluid.cpp:218)
> ==31497== Address 0x7feffecf0 is on thread 1's stack
> ==31497==
> ==31497== Invalid read of size 8
> ==31497== at 0x643AEB: level_wave_func_Meniscus (imkcurve.c:1955)
> ==31497== by 0x65299B: assign_two_comp_domain (imksurf.c:2046)
> ==31497== by 0x64623B: make_level_surface (imksurf.c:245)
> ==31497== by 0x5458AF: FT_InitIntfc3d (finit.c:2137)
> ==31497== by 0x544CA3: FT_InitIntfc (finit.c:1853)
> ==31497== by 0x40C072: main (iFluid.cpp:218)
> ==31497== Address 0x7feffecf0 is on thread 1's stack
> ==31497==
> ==31497== Conditional jump or move depends on uninitialised value(s)
> ==31497== at 0x428B9F:
> Incompress_Solver_Smooth_Basis::setAdvectionDt_vd() (iFbasic.cpp:2799)
> ==31497== by 0x4B8BB9:
> Incompress_Solver_Smooth_3D_Cartesian::setInitialCondition_RSSY_vd(_LEVEL_FUNC_PACK*)
> (iFcartsn3d.cpp:15253)
> ==31497== by 0x40C485: main (iFluid.cpp:349)
> ==31497==
> ==31497== Conditional jump or move depends on uninitialised value(s)
> ==31497== at 0x428BA9:
> Incompress_Solver_Smooth_Basis::setAdvectionDt_vd() (iFbasic.cpp:2799)
> ==31497== by 0x4B8BB9:
> Incompress_Solver_Smooth_3D_Cartesian::setInitialCondition_RSSY_vd(_LEVEL_FUNC_PACK*)
> (iFcartsn3d.cpp:15253)
> ==31497== by 0x40C485: main (iFluid.cpp:349)
> ==31497==
> ==31497== Conditional jump or move depends on uninitialised value(s)
> ==31497== at 0x85B00E3: vfprintf (in /lib64/libc-2.12.so)
> ==31497== by 0x85BA189: printf (in /lib64/libc-2.12.so)
> ==31497== by 0x486108:
> Incompress_Solver_Smooth_3D_Cartesian::compDiffWithSmoothProperty_velocity_MAC_coupled_vd()
> (iFcartsn3d.cpp:6101)
> ==31497== by 0x4CBF0D:
> Incompress_Solver_Smooth_3D_Cartesian::solve_vd(double)
> (iFcartsn3d.cpp:18574)
> ==31497== by 0x40C72E: ifluid_driver(_Front*,
> Incompress_Solver_Smooth_Basis*, _F_BASIC_DATA*) (iFluid.cpp:419)
> ==31497== by 0x40C4F3: main (iFluid.cpp:369)
> ==31497==
> ==31497== Conditional jump or move depends on uninitialised value(s)
> ==31497== at 0x85B0101: vfprintf (in /lib64/libc-2.12.so)
> ==31497== by 0x85BA189: printf (in /lib64/libc-2.12.so)
> ==31497== by 0x486108:
> Incompress_Solver_Smooth_3D_Cartesian::compDiffWithSmoothProperty_velocity_MAC_coupled_vd()
> (iFcartsn3d.cpp:6101)
> ==31497== by 0x4CBF0D:
> Incompress_Solver_Smooth_3D_Cartesian::solve_vd(double)
> (iFcartsn3d.cpp:18574)
> ==31497== by 0x40C72E: ifluid_driver(_Front*,
> Incompress_Solver_Smooth_Basis*, _F_BASIC_DATA*) (iFluid.cpp:419)
> ==31497== by 0x40C4F3: main (iFluid.cpp:369)
> ==31497==
> ==31497== Conditional jump or move depends on uninitialised value(s)
> ==31497== at 0x4ED737:
> Incompress_Solver_Smooth_3D_Cartesian::computeSubgridModel_vd()
> (iFcartsn3d.cpp:24519)
> ==31497== by 0x4CBFBC:
> Incompress_Solver_Smooth_3D_Cartesian::solve_vd(double)
> (iFcartsn3d.cpp:18594)
> ==31497== by 0x40C72E: ifluid_driver(_Front*,
> Incompress_Solver_Smooth_Basis*, _F_BASIC_DATA*) (iFluid.cpp:419)
> ==31497== by 0x40C4F3: main (iFluid.cpp:369)
> ==31497==
> ==31497== Conditional jump or move depends on uninitialised value(s)
> ==31497== at 0x4ED754:
> Incompress_Solver_Smooth_3D_Cartesian::computeSubgridModel_vd()
> (iFcartsn3d.cpp:24519)
> ==31497== by 0x4CBFBC:
> Incompress_Solver_Smooth_3D_Cartesian::solve_vd(double)
> (iFcartsn3d.cpp:18594)
> ==31497== by 0x40C72E: ifluid_driver(_Front*,
> Incompress_Solver_Smooth_Basis*, _F_BASIC_DATA*) (iFluid.cpp:419)
> ==31497== by 0x40C4F3: main (iFluid.cpp:369)
> ==31497==
> ==31497== Conditional jump or move depends on uninitialised value(s)
> ==31497== at 0x85B4CF0: __printf_fp (in /lib64/libc-2.12.so)
> ==31497== by 0x85B089F: vfprintf (in /lib64/libc-2.12.so)
> ==31497== by 0x85BA189: printf (in /lib64/libc-2.12.so)
> ==31497== by 0x4ED9F7:
> Incompress_Solver_Smooth_3D_Cartesian::computeSubgridModel_vd()
> (iFcartsn3d.cpp:24549)
> ==31497== by 0x4CBFBC:
> Incompress_Solver_Smooth_3D_Cartesian::solve_vd(double)
> (iFcartsn3d.cpp:18594)
> ==31497== by 0x40C72E: ifluid_driver(_Front*,
> Incompress_Solver_Smooth_Basis*, _F_BASIC_DATA*) (iFluid.cpp:419)
> ==31497== by 0x40C4F3: main (iFluid.cpp:369)
> ==31497==
> ==31497== Conditional jump or move depends on uninitialised value(s)
> ==31497== at 0x85B4F91: __printf_fp (in /lib64/libc-2.12.so)
> ==31497== by 0x85B089F: vfprintf (in /lib64/libc-2.12.so)
> ==31497== by 0x85BA189: printf (in /lib64/libc-2.12.so)
> ==31497== by 0x4ED9F7:
> Incompress_Solver_Smooth_3D_Cartesian::computeSubgridModel_vd()
> (iFcartsn3d.cpp:24549)
> ==31497== by 0x4CBFBC:
> Incompress_Solver_Smooth_3D_Cartesian::solve_vd(double)
> (iFcartsn3d.cpp:18594)
> ==31497== by 0x40C72E: ifluid_driver(_Front*,
> Incompress_Solver_Smooth_Basis*, _F_BASIC_DATA*) (iFluid.cpp:419)
> ==31497== by 0x40C4F3: main (iFluid.cpp:369)
> ==31497==
> ==31497== Conditional jump or move depends on uninitialised value(s)
> ==31497== at 0x85AE396: __mpn_extract_double (in /lib64/libc-2.12.so)
> ==31497== by 0x85B51BD: __printf_fp (in /lib64/libc-2.12.so)
> ==31497== by 0x85B089F: vfprintf (in /lib64/libc-2.12.so)
> ==31497== by 0x85BA189: printf (in /lib64/libc-2.12.so)
> ==31497== by 0x4ED9F7:
> Incompress_Solver_Smooth_3D_Cartesian::computeSubgridModel_vd()
> (iFcartsn3d.cpp:24549)
> ==31497== by 0x4CBFBC:
> Incompress_Solver_Smooth_3D_Cartesian::solve_vd(double)
> (iFcartsn3d.cpp:18594)
> ==31497== by 0x40C72E: ifluid_driver(_Front*,
> Incompress_Solver_Smooth_Basis*, _F_BASIC_DATA*) (iFluid.cpp:419)
> ==31497== by 0x40C4F3: main (iFluid.cpp:369)
> ==31497==
> ==31497== Conditional jump or move depends on uninitialised value(s)
> ==31497== at 0x85AE39B: __mpn_extract_double (in /lib64/libc-2.12.so)
> ==31497== by 0x85B51BD: __printf_fp (in /lib64/libc-2.12.so)
> ==31497== by 0x85B089F: vfprintf (in /lib64/libc-2.12.so)
> ==31497== by 0x85BA189: printf (in /lib64/libc-2.12.so)
> ==31497== by 0x4ED9F7:
> Incompress_Solver_Smooth_3D_Cartesian::computeSubgridModel_vd()
> (iFcartsn3d.cpp:24549)
> ==31497== by 0x4CBFBC:
> Incompress_Solver_Smooth_3D_Cartesian::solve_vd(double)
> (iFcartsn3d.cpp:18594)
> ==31497== by 0x40C72E: ifluid_driver(_Front*,
> Incompress_Solver_Smooth_Basis*, _F_BASIC_DATA*) (iFluid.cpp:419)
> ==31497== by 0x40C4F3: main (iFluid.cpp:369)
> ==31497==
> ==31497== Conditional jump or move depends on uninitialised value(s)
> ==31497== at 0x85B59EC: __printf_fp (in /lib64/libc-2.12.so)
> ==31497== by 0x85B089F: vfprintf (in /lib64/libc-2.12.so)
> ==31497== by 0x85BA189: printf (in /lib64/libc-2.12.so)
> ==31497== by 0x4ED9F7:
> Incompress_Solver_Smooth_3D_Cartesian::computeSubgridModel_vd()
> (iFcartsn3d.cpp:24549)
> ==31497== by 0x4CBFBC:
> Incompress_Solver_Smooth_3D_Cartesian::solve_vd(double)
> (iFcartsn3d.cpp:18594)
> ==31497== by 0x40C72E: ifluid_driver(_Front*,
> Incompress_Solver_Smooth_Basis*, _F_BASIC_DATA*) (iFluid.cpp:419)
> ==31497== by 0x40C4F3: main (iFluid.cpp:369)
> ==31497==
> ==31497== Conditional jump or move depends on uninitialised value(s)
> ==31497== at 0x85B5A9D: __printf_fp (in /lib64/libc-2.12.so)
> ==31497== by 0x85B089F: vfprintf (in /lib64/libc-2.12.so)
> ==31497== by 0x85BA189: printf (in /lib64/libc-2.12.so)
> ==31497== by 0x4ED9F7:
> Incompress_Solver_Smooth_3D_Cartesian::computeSubgridModel_vd()
> (iFcartsn3d.cpp:24549)
> ==31497== by 0x4CBFBC:
> Incompress_Solver_Smooth_3D_Cartesian::solve_vd(double)
> (iFcartsn3d.cpp:18594)
> ==31497== by 0x40C72E: ifluid_driver(_Front*,
> Incompress_Solver_Smooth_Basis*, _F_BASIC_DATA*) (iFluid.cpp:419)
> ==31497== by 0x40C4F3: main (iFluid.cpp:369)
> ==31497==
> ==31497== Conditional jump or move depends on uninitialised value(s)
> ==31497== at 0x85B5C13: __printf_fp (in /lib64/libc-2.12.so)
> ==31497== by 0x85B089F: vfprintf (in /lib64/libc-2.12.so)
> ==31497== by 0x85BA189: printf (in /lib64/libc-2.12.so)
> ==31497== by 0x4ED9F7:
> Incompress_Solver_Smooth_3D_Cartesian::computeSubgridModel_vd()
> (iFcartsn3d.cpp:24549)
> ==31497== by 0x4CBFBC:
> Incompress_Solver_Smooth_3D_Cartesian::solve_vd(double)
> (iFcartsn3d.cpp:18594)
> ==31497== by 0x40C72E: ifluid_driver(_Front*,
> Incompress_Solver_Smooth_Basis*, _F_BASIC_DATA*) (iFluid.cpp:419)
> ==31497== by 0x40C4F3: main (iFluid.cpp:369)
> ==31497==
> ==31497== Conditional jump or move depends on uninitialised value(s)
> ==31497== at 0x85B5CA4: __printf_fp (in /lib64/libc-2.12.so)
> ==31497== by 0x85B089F: vfprintf (in /lib64/libc-2.12.so)
> ==31497== by 0x85BA189: printf (in /lib64/libc-2.12.so)
> ==31497== by 0x4ED9F7:
> Incompress_Solver_Smooth_3D_Cartesian::computeSubgridModel_vd()
> (iFcartsn3d.cpp:24549)
> ==31497== by 0x4CBFBC:
> Incompress_Solver_Smooth_3D_Cartesian::solve_vd(double)
> (iFcartsn3d.cpp:18594)
> ==31497== by 0x40C72E: ifluid_driver(_Front*,
> Incompress_Solver_Smooth_Basis*, _F_BASIC_DATA*) (iFluid.cpp:419)
> ==31497== by 0x40C4F3: main (iFluid.cpp:369)
> ==31497==
> ==31497== Conditional jump or move depends on uninitialised value(s)
> ==31497== at 0x85B625E: __printf_fp (in /lib64/libc-2.12.so)
> ==31497== by 0x85B089F: vfprintf (in /lib64/libc-2.12.so)
> ==31497== by 0x85BA189: printf (in /lib64/libc-2.12.so)
> ==31497== by 0x4ED9F7:
> Incompress_Solver_Smooth_3D_Cartesian::computeSubgridModel_vd()
> (iFcartsn3d.cpp:24549)
> ==31497== by 0x4CBFBC:
> Incompress_Solver_Smooth_3D_Cartesian::solve_vd(double)
> (iFcartsn3d.cpp:18594)
> ==31497== by 0x40C72E: ifluid_driver(_Front*,
> Incompress_Solver_Smooth_Basis*, _F_BASIC_DATA*) (iFluid.cpp:419)
> ==31497== by 0x40C4F3: main (iFluid.cpp:369)
> ==31497==
> ==31497== Conditional jump or move depends on uninitialised value(s)
> ==31497== at 0x85B6242: __printf_fp (in /lib64/libc-2.12.so)
> ==31497== by 0x85B089F: vfprintf (in /lib64/libc-2.12.so)
> ==31497== by 0x85BA189: printf (in /lib64/libc-2.12.so)
> ==31497== by 0x4ED9F7:
> Incompress_Solver_Smooth_3D_Cartesian::computeSubgridModel_vd()
> (iFcartsn3d.cpp:24549)
> ==31497== by 0x4CBFBC:
> Incompress_Solver_Smooth_3D_Cartesian::solve_vd(double)
> (iFcartsn3d.cpp:18594)
> ==31497== by 0x40C72E: ifluid_driver(_Front*,
> Incompress_Solver_Smooth_Basis*, _F_BASIC_DATA*) (iFluid.cpp:419)
> ==31497== by 0x40C4F3: main (iFluid.cpp:369)
> ==31497==
> ==31497== Syscall param write(buf) points to uninitialised byte(s)
> ==31497== at 0x86465ED: ??? (in /lib64/libc-2.12.so)
> ==31497== by 0x85DCAD2: _IO_file_write@@GLIBC_2.2.5 (in /lib64/
> libc-2.12.so)
> ==31497== by 0x85DE084: _IO_do_write@@GLIBC_2.2.5 (in /lib64/libc-2.12.so
> )
> ==31497== by 0x85DD287: _IO_file_sync@@GLIBC_2.2.5 (in /lib64/
> libc-2.12.so)
> ==31497== by 0x85D1999: fflush (in /lib64/libc-2.12.so)
> ==31497== by 0x6FACFA: preserve_front_advance_front3d (fadv.c:2255)
> ==31497== by 0x6FA14E: mixed_advance_front3d (fadv.c:1895)
> ==31497== by 0x6F9B2D: advance_front3d_tracking_control (fadv.c:1703)
> ==31497== by 0x54E119: FrontAdvance (fmap.c:142)
> ==31497== by 0x54DF27: FT_Propagate (fmap.c:80)
> ==31497== by 0x40CA37: ifluid_driver(_Front*,
> Incompress_Solver_Smooth_Basis*, _F_BASIC_DATA*) (iFluid.cpp:512)
> ==31497== by 0x40C4F3: main (iFluid.cpp:369)
> ==31497== Address 0x412308a is not stack'd, malloc'd or (recently) free'd
> ==31497==
>
> On Fri, Sep 29, 2017 at 8:45 PM, Satish Balay <balay at mcs.anl.gov> wrote:
>
> > Can you run this code with valgrind and send the log?
> >
> > http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind
> >
> > Satish
> >
> > On Sat, 30 Sep 2017, Hao Zhang wrote:
> >
> > > I've modified my source code accordingly using PETSc 3.8.0. It seems no
> > > more useful info got printed out.
> > >
> > > On Fri, Sep 29, 2017 at 8:15 PM, Hao Zhang <hbcbh1999 at gmail.com> wrote:
> > >
> > > > I'm using -fp_trap as I run the simulation. the output only gives
> > > >
> > > > floating point exception
> > > >
> > > > It doesn't matter coarse grid or medium grid or more refined grid. the
> > > > program crashed right away.
> > > >
> > > > On Fri, Sep 29, 2017 at 12:19 AM, Barry Smith <bsmith at mcs.anl.gov>
> > wrote:
> > > >
> > > >>
> > > >> Please upgrade to the latest 3.8 version of PETSc. and then run with
> > > >> -fp_trap
> > > >>
> > > >> This message is usually an indication that a NaN or Inf got into
> > the
> > > >> numerical computation. Using the latest PETSc will make it much
> > easier to
> > > >> track down.
> > > >>
> > > >> Barry
> > > >>
> > > >> > On Sep 28, 2017, at 8:57 PM, Hao Zhang <hbcbh1999 at gmail.com> wrote:
> > > >> >
> > > >> > I'm experiencing error when doing mesh refinement(mesh x2 for X, Y
> > and
> > > >> Z direction) for 3D poisson problem.
> > > >> > PETSc produces no errors when no mesh refinement. I've pasted some
> > > >> debugging info here. Please advise.
> > > >> >
> > > >> >
> > > >> > [0]PETSC ERROR: --------------------- Error Message
> > > >> --------------------------------------------------------------
> > > >> > [0]PETSC ERROR: Invalid argument
> > > >> > [0]PETSC ERROR: Scalar value must be same on all processes,
> > argument # 3
> > > >> > [0]PETSC ERROR: See http://www.mcs.anl.gov/petsc/
> > documentation/faq.html
> > > >> for trouble shooting.
> > > >> > [0]PETSC ERROR: Petsc Release Version 3.5.4, May, 23, 2015
> > > >> > [0]PETSC ERROR: /home/haozhang/FT.NO.FULL/iFluid/iFluid on a
> > > >> arch-linux2-c-debug named vn18 by haozhang Thu Sep 28 23:47:39 2017
> > > >> > [0]PETSC ERROR: Configure options --with-mpi-dir=/cm/shared/
> > apps/openmpi/gcc/64/1.8.5/
> > > >> --download-fblaslapack=/home/haozhang/tmp/fblaslapack-3.4.2.tar.gz
> > > >> --download-hypre=/home/haozhang/tmp/hypre-2.9.1a.tar.gz
> > > >> --with-valgrind-include=/home/haozhang/include/valgrind/
> > > >> > [0]PETSC ERROR: #1 VecAXPBYPCZ() line 731 in
> > > >> /home/haozhang/tmp/petsc-3.5.4_HYPRE/src/vec/vec/interface/rvector.c
> > > >> > [0]PETSC ERROR: #2 KSPSolve_BCGS() line 87 in
> > > >> /home/haozhang/tmp/petsc-3.5.4_HYPRE/src/ksp/ksp/impls/bcgs/bcgs.c
> > > >> > [0]PETSC ERROR: #3 KSPSolve() line 460 in
> > /home/haozhang/tmp/petsc-3.5.4
> > > >> _HYPRE/src/ksp/ksp/interface/itfunc.c
> > > >> > [vn18:99838] *** Process received signal ***
> > > >> > [vn18:99838] Signal: Aborted (6)
> > > >> > [vn18:99838] Signal code: (-6)
> > > >> > [vn18:99848] *** Process received signal ***
> > > >> > [vn18:99849] *** Process received signal ***
> > > >> > [vn18:99849] Signal: Aborted (6)
> > > >> > [vn18:99849] Signal code: (-6)
> > > >> > [vn18:99848] Signal: Aborted (6)
> > > >> > [vn18:99848] Signal code: (-6)
> > > >> > [vn18:99838] [ 0] /lib64/libpthread.so.0(+0xf790)[0x2aaaadbb4790]
> > > >> > [vn18:99838] [ 1] [vn18:99848] [ 0] /lib64/libpthread.so.0(+0xf790
> > > >> )[0x2aaaadbb4790]
> > > >> > [vn18:99848] [ 1] /lib64/libc.so.6(gsignal+0x35)[0x2aaaaddf5625]
> > > >> > [vn18:99838] [ 2] /lib64/libc.so.6(abort+0x175)[0x2aaaaddf6e05]
> > > >> > [vn18:99838] [ 3] [vn18:99849] [ 0] /lib64/libpthread.so.0(+0xf790
> > > >> )[0x2aaaadbb4790]
> > > >> > [vn18:99849] [ 1] [vn15:122106] *** Process received signal ***
> > > >> > [vn15:122106] Signal: Aborted (6)
> > > >> > [vn15:122106] Signal code: (-6)
> > > >> > /lib64/libc.so.6(gsignal+0x35)[0x2aaaaddf5625]
> > > >> > [vn18:99848] [ 2] /lib64/libc.so.6(abort+0x175)[0x2aaaaddf6e05]
> > > >> > [vn18:99848] [ 3] /home/haozhang/tmp/petsc-3.5.4
> > > >> _HYPRE/arch-linux2-c-debug/lib/libpetsc.so.3.5(PetscTraceBac
> > > >> kErrorHandler+0x503)[0x2aaaaae1d7e1]
> > > >> > [vn18:99838] [ 4] /lib64/libc.so.6(gsignal+0x35)[0x2aaaaddf5625]
> > > >> > [vn18:99849] [ 2] /lib64/libc.so.6(abort+0x175)[0x2aaaaddf6e05]
> > > >> > [vn18:99849] [ 3] [vn15:122107] *** Process received signal ***
> > > >> > [vn15:122107] Signal: Aborted (6)
> > > >> > [vn15:122107] Signal code: (-6)
> > > >> > [vn16:86295] *** Process received signal ***
> > > >> > [vn16:86295] Signal: Aborted (6)
> > > >> > [vn16:86295] Signal code: (-6)
> > > >> > [vn18:99824] *** Process received signal ***
> > > >> > [vn18:99824] Signal: Aborted (6)
> > > >> > [vn18:99824] Signal code: (-6)
> > > >> > [vn18:99844] *** Process received signal ***
> > > >> > [vn18:99844] Signal: Aborted (6)
> > > >> > [vn18:99844] Signal code: (-6)
> > > >> > /home/haozhang/tmp/petsc-3.5.4_HYPRE/arch-linux2-c-debug/lib
> > > >> /libpetsc.so.3.5(PetscError+0x338)[0x2aaaaae183b3]
> > > >> >
> > > >> >
> > > >> >
> > > >> > --
> > > >> > Hao Zhang
> > > >> > Dept. of Applid Mathematics and Statistics,
> > > >> > Stony Brook University,
> > > >> > Stony Brook, New York, 11790
> > > >>
> > > >>
> > > >
> > > >
> > > > --
> > > > Hao Zhang
> > > > Dept. of Applid Mathematics and Statistics,
> > > > Stony Brook University,
> > > > Stony Brook, New York, 11790
> > > >
> > >
> > >
> > >
> > >
> >
> >
>
>
>
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