[petsc-users] mesh refinement PETSc3.5.4 with HYPRE
Hao Zhang
hbcbh1999 at gmail.com
Fri Sep 29 20:33:55 CDT 2017
Thanks. I will recompile and submit a new debug log
On Fri, Sep 29, 2017 at 9:31 PM, Satish Balay <balay at mcs.anl.gov> wrote:
> Most of this is from openmpi. Its best to use --download-mpich
> for valgrind clean mpi as mentioned below.
>
> http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind
>
> [attempting to remove openmpi messages] - all messages below appear to
> be from your appliation code. And I don't see any messages from PETSc
> code in this log.
>
> Once there is memory corruption we get random behavior from
> application. So its best to fix all these issues and make this
> application valgrind clean.
>
> Satish
>
> On Sat, 30 Sep 2017, Hao Zhang wrote:
>
> <snip>
>
> > ==31497== Invalid write of size 8
> > ==31497== at 0x643685: level_wave_func_Meniscus (imkcurve.c:1826)
> > ==31497== by 0x65299B: assign_two_comp_domain (imksurf.c:2046)
> > ==31497== by 0x64623B: make_level_surface (imksurf.c:245)
> > ==31497== by 0x5458AF: FT_InitIntfc3d (finit.c:2137)
> > ==31497== by 0x544CA3: FT_InitIntfc (finit.c:1853)
> > ==31497== by 0x40C072: main (iFluid.cpp:218)
> > ==31497== Address 0x7fe859c38 is on thread 1's stack
> > ==31497==
> > ==31497== Invalid write of size 8
> > ==31497== at 0x64368C: level_wave_func_Meniscus (imkcurve.c:1826)
> > ==31497== by 0x65299B: assign_two_comp_domain (imksurf.c:2046)
> > ==31497== by 0x64623B: make_level_surface (imksurf.c:245)
> > ==31497== by 0x5458AF: FT_InitIntfc3d (finit.c:2137)
> > ==31497== by 0x544CA3: FT_InitIntfc (finit.c:1853)
> > ==31497== by 0x40C072: main (iFluid.cpp:218)
> > ==31497== Address 0x7fe859c30 is on thread 1's stack
> > ==31497==
> > ==31497== Invalid read of size 8
> > ==31497== at 0x643693: level_wave_func_Meniscus (imkcurve.c:1831)
> > ==31497== by 0x65299B: assign_two_comp_domain (imksurf.c:2046)
> > ==31497== by 0x64623B: make_level_surface (imksurf.c:245)
> > ==31497== by 0x5458AF: FT_InitIntfc3d (finit.c:2137)
> > ==31497== by 0x544CA3: FT_InitIntfc (finit.c:1853)
> > ==31497== by 0x40C072: main (iFluid.cpp:218)
> > ==31497== Address 0x7fe859c38 is on thread 1's stack
> > ==31497==
> > ==31497== Invalid write of size 8
> > ==31497== at 0x64372D: level_wave_func_Meniscus (imkcurve.c:1848)
> > ==31497== by 0x65299B: assign_two_comp_domain (imksurf.c:2046)
> > ==31497== by 0x64623B: make_level_surface (imksurf.c:245)
> > ==31497== by 0x5458AF: FT_InitIntfc3d (finit.c:2137)
> > ==31497== by 0x544CA3: FT_InitIntfc (finit.c:1853)
> > ==31497== by 0x40C072: main (iFluid.cpp:218)
> > ==31497== Address 0x7fe859c18 is on thread 1's stack
> > ==31497==
> > ==31497== Invalid read of size 8
> > ==31497== at 0x7ED3127: tan (in /lib64/libm-2.12.so)
> > ==31497== by 0x65299B: assign_two_comp_domain (imksurf.c:2046)
> > ==31497== by 0x64623B: make_level_surface (imksurf.c:245)
> > ==31497== by 0x5458AF: FT_InitIntfc3d (finit.c:2137)
> > ==31497== by 0x544CA3: FT_InitIntfc (finit.c:1853)
> > ==31497== by 0x40C072: main (iFluid.cpp:218)
> > ==31497== Address 0x7fe859c18 is on thread 1's stack
> > ==31497==
> > ==31497== Invalid read of size 8
> > ==31497== at 0x643755: level_wave_func_Meniscus (imkcurve.c:1853)
> > ==31497== by 0x65299B: assign_two_comp_domain (imksurf.c:2046)
> > ==31497== by 0x64623B: make_level_surface (imksurf.c:245)
> > ==31497== by 0x5458AF: FT_InitIntfc3d (finit.c:2137)
> > ==31497== by 0x544CA3: FT_InitIntfc (finit.c:1853)
> > ==31497== by 0x40C072: main (iFluid.cpp:218)
> > ==31497== Address 0x7fe859c30 is on thread 1's stack
> > ==31497==
> > ==31497== Invalid read of size 8
> > ==31497== at 0x643765: level_wave_func_Meniscus (imkcurve.c:1854)
> > ==31497== by 0x65299B: assign_two_comp_domain (imksurf.c:2046)
> > ==31497== by 0x64623B: make_level_surface (imksurf.c:245)
> > ==31497== by 0x5458AF: FT_InitIntfc3d (finit.c:2137)
> > ==31497== by 0x544CA3: FT_InitIntfc (finit.c:1853)
> > ==31497== by 0x40C072: main (iFluid.cpp:218)
> > ==31497== Address 0x7fe859c30 is on thread 1's stack
> > ==31497==
> > ==31497== Invalid read of size 8
> > ==31497== at 0x643A7F: level_wave_func_Meniscus (imkcurve.c:1944)
> > ==31497== by 0x65299B: assign_two_comp_domain (imksurf.c:2046)
> > ==31497== by 0x64623B: make_level_surface (imksurf.c:245)
> > ==31497== by 0x5458AF: FT_InitIntfc3d (finit.c:2137)
> > ==31497== by 0x544CA3: FT_InitIntfc (finit.c:1853)
> > ==31497== by 0x40C072: main (iFluid.cpp:218)
> > ==31497== Address 0x7fe859c30 is on thread 1's stack
> > ==31497==
> > ==31497== Invalid write of size 8
> > ==31497== at 0x643A92: level_wave_func_Meniscus (imkcurve.c:1944)
> > ==31497== by 0x65299B: assign_two_comp_domain (imksurf.c:2046)
> > ==31497== by 0x64623B: make_level_surface (imksurf.c:245)
> > ==31497== by 0x5458AF: FT_InitIntfc3d (finit.c:2137)
> > ==31497== by 0x544CA3: FT_InitIntfc (finit.c:1853)
> > ==31497== by 0x40C072: main (iFluid.cpp:218)
> > ==31497== Address 0x7feffecf0 is on thread 1's stack
> > ==31497==
> > ==31497== Invalid read of size 8
> > ==31497== at 0x643AEB: level_wave_func_Meniscus (imkcurve.c:1955)
> > ==31497== by 0x65299B: assign_two_comp_domain (imksurf.c:2046)
> > ==31497== by 0x64623B: make_level_surface (imksurf.c:245)
> > ==31497== by 0x5458AF: FT_InitIntfc3d (finit.c:2137)
> > ==31497== by 0x544CA3: FT_InitIntfc (finit.c:1853)
> > ==31497== by 0x40C072: main (iFluid.cpp:218)
> > ==31497== Address 0x7feffecf0 is on thread 1's stack
> > ==31497==
> > ==31497== Conditional jump or move depends on uninitialised value(s)
> > ==31497== at 0x428B9F:
> > Incompress_Solver_Smooth_Basis::setAdvectionDt_vd() (iFbasic.cpp:2799)
> > ==31497== by 0x4B8BB9:
> > Incompress_Solver_Smooth_3D_Cartesian::setInitialCondition_RSSY_vd(_
> LEVEL_FUNC_PACK*)
> > (iFcartsn3d.cpp:15253)
> > ==31497== by 0x40C485: main (iFluid.cpp:349)
> > ==31497==
> > ==31497== Conditional jump or move depends on uninitialised value(s)
> > ==31497== at 0x428BA9:
> > Incompress_Solver_Smooth_Basis::setAdvectionDt_vd() (iFbasic.cpp:2799)
> > ==31497== by 0x4B8BB9:
> > Incompress_Solver_Smooth_3D_Cartesian::setInitialCondition_RSSY_vd(_
> LEVEL_FUNC_PACK*)
> > (iFcartsn3d.cpp:15253)
> > ==31497== by 0x40C485: main (iFluid.cpp:349)
> > ==31497==
> > ==31497== Conditional jump or move depends on uninitialised value(s)
> > ==31497== at 0x85B00E3: vfprintf (in /lib64/libc-2.12.so)
> > ==31497== by 0x85BA189: printf (in /lib64/libc-2.12.so)
> > ==31497== by 0x486108:
> > Incompress_Solver_Smooth_3D_Cartesian::compDiffWithSmoothProperty_
> velocity_MAC_coupled_vd()
> > (iFcartsn3d.cpp:6101)
> > ==31497== by 0x4CBF0D:
> > Incompress_Solver_Smooth_3D_Cartesian::solve_vd(double)
> > (iFcartsn3d.cpp:18574)
> > ==31497== by 0x40C72E: ifluid_driver(_Front*,
> > Incompress_Solver_Smooth_Basis*, _F_BASIC_DATA*) (iFluid.cpp:419)
> > ==31497== by 0x40C4F3: main (iFluid.cpp:369)
> > ==31497==
> > ==31497== Conditional jump or move depends on uninitialised value(s)
> > ==31497== at 0x85B0101: vfprintf (in /lib64/libc-2.12.so)
> > ==31497== by 0x85BA189: printf (in /lib64/libc-2.12.so)
> > ==31497== by 0x486108:
> > Incompress_Solver_Smooth_3D_Cartesian::compDiffWithSmoothProperty_
> velocity_MAC_coupled_vd()
> > (iFcartsn3d.cpp:6101)
> > ==31497== by 0x4CBF0D:
> > Incompress_Solver_Smooth_3D_Cartesian::solve_vd(double)
> > (iFcartsn3d.cpp:18574)
> > ==31497== by 0x40C72E: ifluid_driver(_Front*,
> > Incompress_Solver_Smooth_Basis*, _F_BASIC_DATA*) (iFluid.cpp:419)
> > ==31497== by 0x40C4F3: main (iFluid.cpp:369)
> > ==31497==
> > ==31497== Conditional jump or move depends on uninitialised value(s)
> > ==31497== at 0x4ED737:
> > Incompress_Solver_Smooth_3D_Cartesian::computeSubgridModel_vd()
> > (iFcartsn3d.cpp:24519)
> > ==31497== by 0x4CBFBC:
> > Incompress_Solver_Smooth_3D_Cartesian::solve_vd(double)
> > (iFcartsn3d.cpp:18594)
> > ==31497== by 0x40C72E: ifluid_driver(_Front*,
> > Incompress_Solver_Smooth_Basis*, _F_BASIC_DATA*) (iFluid.cpp:419)
> > ==31497== by 0x40C4F3: main (iFluid.cpp:369)
> > ==31497==
> > ==31497== Conditional jump or move depends on uninitialised value(s)
> > ==31497== at 0x4ED754:
> > Incompress_Solver_Smooth_3D_Cartesian::computeSubgridModel_vd()
> > (iFcartsn3d.cpp:24519)
> > ==31497== by 0x4CBFBC:
> > Incompress_Solver_Smooth_3D_Cartesian::solve_vd(double)
> > (iFcartsn3d.cpp:18594)
> > ==31497== by 0x40C72E: ifluid_driver(_Front*,
> > Incompress_Solver_Smooth_Basis*, _F_BASIC_DATA*) (iFluid.cpp:419)
> > ==31497== by 0x40C4F3: main (iFluid.cpp:369)
> > ==31497==
> > ==31497== Conditional jump or move depends on uninitialised value(s)
> > ==31497== at 0x85B4CF0: __printf_fp (in /lib64/libc-2.12.so)
> > ==31497== by 0x85B089F: vfprintf (in /lib64/libc-2.12.so)
> > ==31497== by 0x85BA189: printf (in /lib64/libc-2.12.so)
> > ==31497== by 0x4ED9F7:
> > Incompress_Solver_Smooth_3D_Cartesian::computeSubgridModel_vd()
> > (iFcartsn3d.cpp:24549)
> > ==31497== by 0x4CBFBC:
> > Incompress_Solver_Smooth_3D_Cartesian::solve_vd(double)
> > (iFcartsn3d.cpp:18594)
> > ==31497== by 0x40C72E: ifluid_driver(_Front*,
> > Incompress_Solver_Smooth_Basis*, _F_BASIC_DATA*) (iFluid.cpp:419)
> > ==31497== by 0x40C4F3: main (iFluid.cpp:369)
> > ==31497==
> > ==31497== Conditional jump or move depends on uninitialised value(s)
> > ==31497== at 0x85B4F91: __printf_fp (in /lib64/libc-2.12.so)
> > ==31497== by 0x85B089F: vfprintf (in /lib64/libc-2.12.so)
> > ==31497== by 0x85BA189: printf (in /lib64/libc-2.12.so)
> > ==31497== by 0x4ED9F7:
> > Incompress_Solver_Smooth_3D_Cartesian::computeSubgridModel_vd()
> > (iFcartsn3d.cpp:24549)
> > ==31497== by 0x4CBFBC:
> > Incompress_Solver_Smooth_3D_Cartesian::solve_vd(double)
> > (iFcartsn3d.cpp:18594)
> > ==31497== by 0x40C72E: ifluid_driver(_Front*,
> > Incompress_Solver_Smooth_Basis*, _F_BASIC_DATA*) (iFluid.cpp:419)
> > ==31497== by 0x40C4F3: main (iFluid.cpp:369)
> > ==31497==
> > ==31497== Conditional jump or move depends on uninitialised value(s)
> > ==31497== at 0x85AE396: __mpn_extract_double (in /lib64/libc-2.12.so)
> > ==31497== by 0x85B51BD: __printf_fp (in /lib64/libc-2.12.so)
> > ==31497== by 0x85B089F: vfprintf (in /lib64/libc-2.12.so)
> > ==31497== by 0x85BA189: printf (in /lib64/libc-2.12.so)
> > ==31497== by 0x4ED9F7:
> > Incompress_Solver_Smooth_3D_Cartesian::computeSubgridModel_vd()
> > (iFcartsn3d.cpp:24549)
> > ==31497== by 0x4CBFBC:
> > Incompress_Solver_Smooth_3D_Cartesian::solve_vd(double)
> > (iFcartsn3d.cpp:18594)
> > ==31497== by 0x40C72E: ifluid_driver(_Front*,
> > Incompress_Solver_Smooth_Basis*, _F_BASIC_DATA*) (iFluid.cpp:419)
> > ==31497== by 0x40C4F3: main (iFluid.cpp:369)
> > ==31497==
> > ==31497== Conditional jump or move depends on uninitialised value(s)
> > ==31497== at 0x85AE39B: __mpn_extract_double (in /lib64/libc-2.12.so)
> > ==31497== by 0x85B51BD: __printf_fp (in /lib64/libc-2.12.so)
> > ==31497== by 0x85B089F: vfprintf (in /lib64/libc-2.12.so)
> > ==31497== by 0x85BA189: printf (in /lib64/libc-2.12.so)
> > ==31497== by 0x4ED9F7:
> > Incompress_Solver_Smooth_3D_Cartesian::computeSubgridModel_vd()
> > (iFcartsn3d.cpp:24549)
> > ==31497== by 0x4CBFBC:
> > Incompress_Solver_Smooth_3D_Cartesian::solve_vd(double)
> > (iFcartsn3d.cpp:18594)
> > ==31497== by 0x40C72E: ifluid_driver(_Front*,
> > Incompress_Solver_Smooth_Basis*, _F_BASIC_DATA*) (iFluid.cpp:419)
> > ==31497== by 0x40C4F3: main (iFluid.cpp:369)
> > ==31497==
> > ==31497== Conditional jump or move depends on uninitialised value(s)
> > ==31497== at 0x85B59EC: __printf_fp (in /lib64/libc-2.12.so)
> > ==31497== by 0x85B089F: vfprintf (in /lib64/libc-2.12.so)
> > ==31497== by 0x85BA189: printf (in /lib64/libc-2.12.so)
> > ==31497== by 0x4ED9F7:
> > Incompress_Solver_Smooth_3D_Cartesian::computeSubgridModel_vd()
> > (iFcartsn3d.cpp:24549)
> > ==31497== by 0x4CBFBC:
> > Incompress_Solver_Smooth_3D_Cartesian::solve_vd(double)
> > (iFcartsn3d.cpp:18594)
> > ==31497== by 0x40C72E: ifluid_driver(_Front*,
> > Incompress_Solver_Smooth_Basis*, _F_BASIC_DATA*) (iFluid.cpp:419)
> > ==31497== by 0x40C4F3: main (iFluid.cpp:369)
> > ==31497==
> > ==31497== Conditional jump or move depends on uninitialised value(s)
> > ==31497== at 0x85B5A9D: __printf_fp (in /lib64/libc-2.12.so)
> > ==31497== by 0x85B089F: vfprintf (in /lib64/libc-2.12.so)
> > ==31497== by 0x85BA189: printf (in /lib64/libc-2.12.so)
> > ==31497== by 0x4ED9F7:
> > Incompress_Solver_Smooth_3D_Cartesian::computeSubgridModel_vd()
> > (iFcartsn3d.cpp:24549)
> > ==31497== by 0x4CBFBC:
> > Incompress_Solver_Smooth_3D_Cartesian::solve_vd(double)
> > (iFcartsn3d.cpp:18594)
> > ==31497== by 0x40C72E: ifluid_driver(_Front*,
> > Incompress_Solver_Smooth_Basis*, _F_BASIC_DATA*) (iFluid.cpp:419)
> > ==31497== by 0x40C4F3: main (iFluid.cpp:369)
> > ==31497==
> > ==31497== Conditional jump or move depends on uninitialised value(s)
> > ==31497== at 0x85B5C13: __printf_fp (in /lib64/libc-2.12.so)
> > ==31497== by 0x85B089F: vfprintf (in /lib64/libc-2.12.so)
> > ==31497== by 0x85BA189: printf (in /lib64/libc-2.12.so)
> > ==31497== by 0x4ED9F7:
> > Incompress_Solver_Smooth_3D_Cartesian::computeSubgridModel_vd()
> > (iFcartsn3d.cpp:24549)
> > ==31497== by 0x4CBFBC:
> > Incompress_Solver_Smooth_3D_Cartesian::solve_vd(double)
> > (iFcartsn3d.cpp:18594)
> > ==31497== by 0x40C72E: ifluid_driver(_Front*,
> > Incompress_Solver_Smooth_Basis*, _F_BASIC_DATA*) (iFluid.cpp:419)
> > ==31497== by 0x40C4F3: main (iFluid.cpp:369)
> > ==31497==
> > ==31497== Conditional jump or move depends on uninitialised value(s)
> > ==31497== at 0x85B5CA4: __printf_fp (in /lib64/libc-2.12.so)
> > ==31497== by 0x85B089F: vfprintf (in /lib64/libc-2.12.so)
> > ==31497== by 0x85BA189: printf (in /lib64/libc-2.12.so)
> > ==31497== by 0x4ED9F7:
> > Incompress_Solver_Smooth_3D_Cartesian::computeSubgridModel_vd()
> > (iFcartsn3d.cpp:24549)
> > ==31497== by 0x4CBFBC:
> > Incompress_Solver_Smooth_3D_Cartesian::solve_vd(double)
> > (iFcartsn3d.cpp:18594)
> > ==31497== by 0x40C72E: ifluid_driver(_Front*,
> > Incompress_Solver_Smooth_Basis*, _F_BASIC_DATA*) (iFluid.cpp:419)
> > ==31497== by 0x40C4F3: main (iFluid.cpp:369)
> > ==31497==
> > ==31497== Conditional jump or move depends on uninitialised value(s)
> > ==31497== at 0x85B625E: __printf_fp (in /lib64/libc-2.12.so)
> > ==31497== by 0x85B089F: vfprintf (in /lib64/libc-2.12.so)
> > ==31497== by 0x85BA189: printf (in /lib64/libc-2.12.so)
> > ==31497== by 0x4ED9F7:
> > Incompress_Solver_Smooth_3D_Cartesian::computeSubgridModel_vd()
> > (iFcartsn3d.cpp:24549)
> > ==31497== by 0x4CBFBC:
> > Incompress_Solver_Smooth_3D_Cartesian::solve_vd(double)
> > (iFcartsn3d.cpp:18594)
> > ==31497== by 0x40C72E: ifluid_driver(_Front*,
> > Incompress_Solver_Smooth_Basis*, _F_BASIC_DATA*) (iFluid.cpp:419)
> > ==31497== by 0x40C4F3: main (iFluid.cpp:369)
> > ==31497==
> > ==31497== Conditional jump or move depends on uninitialised value(s)
> > ==31497== at 0x85B6242: __printf_fp (in /lib64/libc-2.12.so)
> > ==31497== by 0x85B089F: vfprintf (in /lib64/libc-2.12.so)
> > ==31497== by 0x85BA189: printf (in /lib64/libc-2.12.so)
> > ==31497== by 0x4ED9F7:
> > Incompress_Solver_Smooth_3D_Cartesian::computeSubgridModel_vd()
> > (iFcartsn3d.cpp:24549)
> > ==31497== by 0x4CBFBC:
> > Incompress_Solver_Smooth_3D_Cartesian::solve_vd(double)
> > (iFcartsn3d.cpp:18594)
> > ==31497== by 0x40C72E: ifluid_driver(_Front*,
> > Incompress_Solver_Smooth_Basis*, _F_BASIC_DATA*) (iFluid.cpp:419)
> > ==31497== by 0x40C4F3: main (iFluid.cpp:369)
> > ==31497==
> > ==31497== Syscall param write(buf) points to uninitialised byte(s)
> > ==31497== at 0x86465ED: ??? (in /lib64/libc-2.12.so)
> > ==31497== by 0x85DCAD2: _IO_file_write@@GLIBC_2.2.5 (in /lib64/
> > libc-2.12.so)
> > ==31497== by 0x85DE084: _IO_do_write@@GLIBC_2.2.5 (in /lib64/
> libc-2.12.so
> > )
> > ==31497== by 0x85DD287: _IO_file_sync@@GLIBC_2.2.5 (in /lib64/
> > libc-2.12.so)
> > ==31497== by 0x85D1999: fflush (in /lib64/libc-2.12.so)
> > ==31497== by 0x6FACFA: preserve_front_advance_front3d (fadv.c:2255)
> > ==31497== by 0x6FA14E: mixed_advance_front3d (fadv.c:1895)
> > ==31497== by 0x6F9B2D: advance_front3d_tracking_control (fadv.c:1703)
> > ==31497== by 0x54E119: FrontAdvance (fmap.c:142)
> > ==31497== by 0x54DF27: FT_Propagate (fmap.c:80)
> > ==31497== by 0x40CA37: ifluid_driver(_Front*,
> > Incompress_Solver_Smooth_Basis*, _F_BASIC_DATA*) (iFluid.cpp:512)
> > ==31497== by 0x40C4F3: main (iFluid.cpp:369)
> > ==31497== Address 0x412308a is not stack'd, malloc'd or (recently)
> free'd
> > ==31497==
> >
> > On Fri, Sep 29, 2017 at 8:45 PM, Satish Balay <balay at mcs.anl.gov> wrote:
> >
> > > Can you run this code with valgrind and send the log?
> > >
> > > http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind
> > >
> > > Satish
> > >
> > > On Sat, 30 Sep 2017, Hao Zhang wrote:
> > >
> > > > I've modified my source code accordingly using PETSc 3.8.0. It seems
> no
> > > > more useful info got printed out.
> > > >
> > > > On Fri, Sep 29, 2017 at 8:15 PM, Hao Zhang <hbcbh1999 at gmail.com>
> wrote:
> > > >
> > > > > I'm using -fp_trap as I run the simulation. the output only gives
> > > > >
> > > > > floating point exception
> > > > >
> > > > > It doesn't matter coarse grid or medium grid or more refined grid.
> the
> > > > > program crashed right away.
> > > > >
> > > > > On Fri, Sep 29, 2017 at 12:19 AM, Barry Smith <bsmith at mcs.anl.gov>
> > > wrote:
> > > > >
> > > > >>
> > > > >> Please upgrade to the latest 3.8 version of PETSc. and then run
> with
> > > > >> -fp_trap
> > > > >>
> > > > >> This message is usually an indication that a NaN or Inf got
> into
> > > the
> > > > >> numerical computation. Using the latest PETSc will make it much
> > > easier to
> > > > >> track down.
> > > > >>
> > > > >> Barry
> > > > >>
> > > > >> > On Sep 28, 2017, at 8:57 PM, Hao Zhang <hbcbh1999 at gmail.com>
> wrote:
> > > > >> >
> > > > >> > I'm experiencing error when doing mesh refinement(mesh x2 for
> X, Y
> > > and
> > > > >> Z direction) for 3D poisson problem.
> > > > >> > PETSc produces no errors when no mesh refinement. I've pasted
> some
> > > > >> debugging info here. Please advise.
> > > > >> >
> > > > >> >
> > > > >> > [0]PETSC ERROR: --------------------- Error Message
> > > > >> --------------------------------------------------------------
> > > > >> > [0]PETSC ERROR: Invalid argument
> > > > >> > [0]PETSC ERROR: Scalar value must be same on all processes,
> > > argument # 3
> > > > >> > [0]PETSC ERROR: See http://www.mcs.anl.gov/petsc/
> > > documentation/faq.html
> > > > >> for trouble shooting.
> > > > >> > [0]PETSC ERROR: Petsc Release Version 3.5.4, May, 23, 2015
> > > > >> > [0]PETSC ERROR: /home/haozhang/FT.NO.FULL/iFluid/iFluid on a
> > > > >> arch-linux2-c-debug named vn18 by haozhang Thu Sep 28 23:47:39
> 2017
> > > > >> > [0]PETSC ERROR: Configure options --with-mpi-dir=/cm/shared/
> > > apps/openmpi/gcc/64/1.8.5/
> > > > >> --download-fblaslapack=/home/haozhang/tmp/fblaslapack-3.4.
> 2.tar.gz
> > > > >> --download-hypre=/home/haozhang/tmp/hypre-2.9.1a.tar.gz
> > > > >> --with-valgrind-include=/home/haozhang/include/valgrind/
> > > > >> > [0]PETSC ERROR: #1 VecAXPBYPCZ() line 731 in
> > > > >> /home/haozhang/tmp/petsc-3.5.4_HYPRE/src/vec/vec/interface/
> rvector.c
> > > > >> > [0]PETSC ERROR: #2 KSPSolve_BCGS() line 87 in
> > > > >> /home/haozhang/tmp/petsc-3.5.4_HYPRE/src/ksp/ksp/impls/
> bcgs/bcgs.c
> > > > >> > [0]PETSC ERROR: #3 KSPSolve() line 460 in
> > > /home/haozhang/tmp/petsc-3.5.4
> > > > >> _HYPRE/src/ksp/ksp/interface/itfunc.c
> > > > >> > [vn18:99838] *** Process received signal ***
> > > > >> > [vn18:99838] Signal: Aborted (6)
> > > > >> > [vn18:99838] Signal code: (-6)
> > > > >> > [vn18:99848] *** Process received signal ***
> > > > >> > [vn18:99849] *** Process received signal ***
> > > > >> > [vn18:99849] Signal: Aborted (6)
> > > > >> > [vn18:99849] Signal code: (-6)
> > > > >> > [vn18:99848] Signal: Aborted (6)
> > > > >> > [vn18:99848] Signal code: (-6)
> > > > >> > [vn18:99838] [ 0] /lib64/libpthread.so.0(+
> 0xf790)[0x2aaaadbb4790]
> > > > >> > [vn18:99838] [ 1] [vn18:99848] [ 0]
> /lib64/libpthread.so.0(+0xf790
> > > > >> )[0x2aaaadbb4790]
> > > > >> > [vn18:99848] [ 1] /lib64/libc.so.6(gsignal+0x35)
> [0x2aaaaddf5625]
> > > > >> > [vn18:99838] [ 2] /lib64/libc.so.6(abort+0x175)[0x2aaaaddf6e05]
> > > > >> > [vn18:99838] [ 3] [vn18:99849] [ 0]
> /lib64/libpthread.so.0(+0xf790
> > > > >> )[0x2aaaadbb4790]
> > > > >> > [vn18:99849] [ 1] [vn15:122106] *** Process received signal ***
> > > > >> > [vn15:122106] Signal: Aborted (6)
> > > > >> > [vn15:122106] Signal code: (-6)
> > > > >> > /lib64/libc.so.6(gsignal+0x35)[0x2aaaaddf5625]
> > > > >> > [vn18:99848] [ 2] /lib64/libc.so.6(abort+0x175)[0x2aaaaddf6e05]
> > > > >> > [vn18:99848] [ 3] /home/haozhang/tmp/petsc-3.5.4
> > > > >> _HYPRE/arch-linux2-c-debug/lib/libpetsc.so.3.5(PetscTraceBac
> > > > >> kErrorHandler+0x503)[0x2aaaaae1d7e1]
> > > > >> > [vn18:99838] [ 4] /lib64/libc.so.6(gsignal+0x35)
> [0x2aaaaddf5625]
> > > > >> > [vn18:99849] [ 2] /lib64/libc.so.6(abort+0x175)[0x2aaaaddf6e05]
> > > > >> > [vn18:99849] [ 3] [vn15:122107] *** Process received signal ***
> > > > >> > [vn15:122107] Signal: Aborted (6)
> > > > >> > [vn15:122107] Signal code: (-6)
> > > > >> > [vn16:86295] *** Process received signal ***
> > > > >> > [vn16:86295] Signal: Aborted (6)
> > > > >> > [vn16:86295] Signal code: (-6)
> > > > >> > [vn18:99824] *** Process received signal ***
> > > > >> > [vn18:99824] Signal: Aborted (6)
> > > > >> > [vn18:99824] Signal code: (-6)
> > > > >> > [vn18:99844] *** Process received signal ***
> > > > >> > [vn18:99844] Signal: Aborted (6)
> > > > >> > [vn18:99844] Signal code: (-6)
> > > > >> > /home/haozhang/tmp/petsc-3.5.4_HYPRE/arch-linux2-c-debug/lib
> > > > >> /libpetsc.so.3.5(PetscError+0x338)[0x2aaaaae183b3]
> > > > >> >
> > > > >> >
> > > > >> >
> > > > >> > --
> > > > >> > Hao Zhang
> > > > >> > Dept. of Applid Mathematics and Statistics,
> > > > >> > Stony Brook University,
> > > > >> > Stony Brook, New York, 11790
> > > > >>
> > > > >>
> > > > >
> > > > >
> > > > > --
> > > > > Hao Zhang
> > > > > Dept. of Applid Mathematics and Statistics,
> > > > > Stony Brook University,
> > > > > Stony Brook, New York, 11790
> > > > >
> > > >
> > > >
> > > >
> > > >
> > >
> > >
> >
> >
> >
>
>
--
Hao Zhang
Dept. of Applid Mathematics and Statistics,
Stony Brook University,
Stony Brook, New York, 11790
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