[petsc-users] configuration error
Manav Bhatia
bhatiamanav at gmail.com
Mon Oct 30 11:57:24 CDT 2017
I am not getting errors with mumps (please see below).
Interestingly, I just compiled this on another machine with clang-3.8 and gfortran-6.7 without problems.
-Manav
mumps_c.c:307:53: error: no member named 'nnz' in 'CMUMPS_STRUC_C'; did you mean 'nz'?
mumps_par->n=0; mumps_par->nz=0; mumps_par->nnz=0; mumps_par->nz_loc=0; mumps_par->nnz_loc=0; mumps_par->nelt=0;mumps_par->instance_number=0;mumps_par->deficiency=0;mumps_par->lwk_user=0;mumps_par->size_schur=0;mumps_par->lrhs=0; mumps_par->lredrhs=0; mumps_par->nrhs=0; mumps_par->nz_rhs=0; mumps_par->lsol_loc=0;
^~~
nz
/Users/manav/Documents/codes/numerical_lib/petsc/include/cmumps_c.h:56:20: note: 'nz' declared here
MUMPS_INT nz;
^
mumps_c.c:307:92: error: no member named 'nnz_loc' in 'CMUMPS_STRUC_C'; did you mean 'nz_loc'?
mumps_par->n=0; mumps_par->nz=0; mumps_par->nnz=0; mumps_par->nz_loc=0; mumps_par->nnz_loc=0; mumps_par->nelt=0;mumps_par->instance_number=0;mumps_par->deficiency=0;mumps_par->lwk_user=0;mumps_par->size_schur=0;mumps_par->lrhs=0; mumps_par->lredrhs=0; mumps_par->nrhs=0; mumps_par->nz_rhs=0; mumps_par->lsol_loc=0;
^~~~~~~
nz_loc
/Users/manav/Documents/codes/numerical_lib/petsc/include/cmumps_c.h:62:20: note: 'nz_loc' declared here
MUMPS_INT nz_loc;
^
mumps_c.c:419:42: error: no member named 'nnz' in 'CMUMPS_STRUC_C'; did you mean 'nz'?
&(mumps_par->nz), &(mumps_par->nnz), irn, &irn_avail, jcn, &jcn_avail, a, &a_avail,
^~~
nz
/Users/manav/Documents/codes/numerical_lib/petsc/include/cmumps_c.h:56:20: note: 'nz' declared here
MUMPS_INT nz;
^
mumps_c.c:420:46: error: no member named 'nnz_loc' in 'CMUMPS_STRUC_C'; did you mean 'nz_loc'?
&(mumps_par->nz_loc), &(mumps_par->nnz_loc), irn_loc, &irn_loc_avail, jcn_loc, &jcn_loc_avail,
^~~~~~~
nz_loc
/Users/manav/Documents/codes/numerical_lib/petsc/include/cmumps_c.h:62:20: note: 'nz_loc' declared here
MUMPS_INT nz_loc;
^
mumps_c.c:419:29: warning: incompatible pointer types passing 'int *' to parameter of type 'int64_t *' (aka 'long long *') [-Wincompatible-pointer-types]
&(mumps_par->nz), &(mumps_par->nnz), irn, &irn_avail, jcn, &jcn_avail, a, &a_avail,
^~~~~~~~~~~~~~~~~
mumps_c.c:99:28: note: passing argument to parameter 'nnz' here
MUMPS_INT8 *nnz,
^
mumps_c.c:420:33: warning: incompatible pointer types passing 'int *' to parameter of type 'int64_t *' (aka 'long long *') [-Wincompatible-pointer-types]
&(mumps_par->nz_loc), &(mumps_par->nnz_loc), irn_loc, &irn_loc_avail, jcn_loc, &jcn_loc_avail,
^~~~~~~~~~~~~~~~~~~~~
mumps_c.c:107:28: note: passing argument to parameter 'nnz_loc' here
MUMPS_INT8 *nnz_loc,
^
2 warnings and 4 errors generated.
> On Oct 30, 2017, at 11:36 AM, Kong, Fande <fande.kong at inl.gov> wrote:
>
> We had exactly the same issue when upgraded compilers. I guess this is somehow related to gfortran. A simple way to work around for us is to change if with_rpath: to if False at line 54 of config/BuildSystem/config/libraries.py.
>
> Not sure if it works for you.
>
> Fande,
>
>
>
>
> On Mon, Oct 30, 2017 at 10:14 AM, Manav Bhatia <bhatiamanav at gmail.com <mailto:bhatiamanav at gmail.com>> wrote:
> Hi,
>
> I am trying to install pets 3.8 on a new MacBook machine with OS 10.13. I have installed openmpi from macports and I am getting this error on configuration. Attached is also the configure.log file.
>
> I am not sure how to proceed with this. Any advice will be greatly appreciated!
>
> Regards,
> Manav
>
> ===============================================================================
> Configuring PETSc to compile on your system
> ===============================================================================
> =============================================================================== ***** WARNING: Using default optimization C flags -g -O3 You might consider manually setting optimal optimization flags for your system with COPTFLAGS="optimization flags" see config/examples/arch-*-opt.py for examples =============================================================================== =============================================================================== ***** WARNING: Using default C++ optimization flags -g -O3 You might consider manually setting optimal optimization flags for your system with CXXOPTFLAGS="optimization flags" see config/examples/arch-*-opt.py for examples =============================================================================== =============================================================================== ***** WARNING: Using default FORTRAN optimization flags -g -O You might consider manually setting optimal optimization flags for your system with FOPTFLAGS="optimization flags" see config/examples/arch-*-opt.py for examples =============================================================================== =============================================================================== WARNING! Compiling PETSc with no debugging, this should only be done for timing and production runs. All development should be done when configured using --with-debugging=1 =============================================================================== TESTING: checkCLibraries from config.compilers(config/BuildSystem/config/compilers.py:171) *******************************************************************************
> UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log for details):
> -------------------------------------------------------------------------------
> C libraries cannot directly be used from Fortran
> *******************************************************************************
>
>
>
>
>
>
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