[petsc-users] jmp_buf error while linking petsc

[Satish Balay]

Ok - Then the issue might be with your makefile.  Perhaps its not a
petsc formatted makefile.

In this case - run 'make getincludedirs getlibs' in PETSC_DIR - and
use the compilers, compile/link options listed there.

Satish

On Tue, 21 Mar 2017, Bikash Kanungo wrote:

> Hi Satish,
> 
> Yes, I ran 'make test' and it didn't throw any error. Here's my test.log:
> 
> Running test examples to verify correct installation
> Using
> PETSC_DIR=/home/bikashk/softwares/femdft_softwares/petsc/opt_3.7.5_mvapich2_64bit_complex
> and PETSC_ARCH=
> C/C++ example src/snes/examples/tutorials/ex19 run successfully with 1 MPI
> process
> C/C++ example src/snes/examples/tutorials/ex19 run successfully with 2 MPI
> processes
> Fortran example src/snes/examples/tutorials/ex5f run successfully with 1
> MPI process
> Completed test examples
> 
> 
> Thanks,
> Bikash
> 
> On Tue, Mar 21, 2017 at 6:51 PM, Satish Balay <balay at mcs.anl.gov> wrote:
> 
> > Did you run 'make test' after insatalling PETSc? Were there errors with
> > this test?
> >
> > [you can send us corresponding test.log]
> >
> > Satish
> >
> > On Tue, 21 Mar 2017, Bikash Kanungo wrote:
> >
> > > Hi,
> > >
> > > I have recently installed petsc-3.7.5. However, while linking petsc with
> > my
> > > code, I get the following compilation error:
> > >
> > > /home/bikashk/softwares/femdft_softwares/petsc/opt_3.
> > 7.5_mvapich2_64bit_complex/include/petscdraw.h(335):
> > > error: identifier "jmp_buf" is undefined
> > >   PETSC_EXTERN jmp_buf PetscXIOErrorHandlerJumpBuf;
> > >
> > >
> > > I used the following configure options while compiling petsc:
> > > ./configure
> > > --prefix=/home/bikashk/softwares/femdft_softwares/
> > petsc/opt_3.7.5_mvapich2_64bit_complex
> > > --with-debugging=no --with-scalar-type=complex CFLAGS="-O3 -xcore-avx2"
> > > CXXFLAGS="-O3 -xcore-avx2" --with-mpi-dir=/opt/mvapich2/intel/ib/
> > > -with-blas-lib="-Wl,--start-group
> > > /opt/intel/composer_xe_2015.2.164/mkl/lib/intel64/libmkl_intel_lp64.a
> > > /opt/intel/composer_xe_2015.2.164/mkl/lib/intel64/libmkl_sequential.a
> > > /opt/intel/composer_xe_2015.2.164/mkl/lib/intel64/libmkl_core.a
> > > -Wl,--end-group -lpthread -lm" --with-lapack-lib="-Wl,--start-group
> > > /opt/intel/composer_xe_2015.2.164/mkl/lib/intel64/libmkl_intel_lp64.a
> > > /opt/intel/composer_xe_2015.2.164/mkl/lib/intel64/libmkl_sequential.a
> > > /opt/intel/composer_xe_2015.2.164/mkl/lib/intel64/libmkl_core.a
> > > -Wl,--end-group -lpthread -lm" --with-cxx-dialect=C++11
> > >
> > > I would really appreciate any help on how to fix it.
> > >
> > > Thanks,
> > > Bikash
> > >
> >
> >
> 
> 
>