[petsc-users] jmp_buf error while linking petsc

[Satish Balay]

Should have said:

make getccompiler getincludedirs getlinklibs

Satish

On Tue, 21 Mar 2017, Satish Balay wrote:

> Ok - Then the issue might be with your makefile.  Perhaps its not a
> petsc formatted makefile.
> 
> In this case - run 'make getincludedirs getlibs' in PETSC_DIR - and
> use the compilers, compile/link options listed there.
> 
> Satish
> 
> On Tue, 21 Mar 2017, Bikash Kanungo wrote:
> 
> > Hi Satish,
> > 
> > Yes, I ran 'make test' and it didn't throw any error. Here's my test.log:
> > 
> > Running test examples to verify correct installation
> > Using
> > PETSC_DIR=/home/bikashk/softwares/femdft_softwares/petsc/opt_3.7.5_mvapich2_64bit_complex
> > and PETSC_ARCH=
> > C/C++ example src/snes/examples/tutorials/ex19 run successfully with 1 MPI
> > process
> > C/C++ example src/snes/examples/tutorials/ex19 run successfully with 2 MPI
> > processes
> > Fortran example src/snes/examples/tutorials/ex5f run successfully with 1
> > MPI process
> > Completed test examples
> > 
> > 
> > Thanks,
> > Bikash
> > 
> > On Tue, Mar 21, 2017 at 6:51 PM, Satish Balay <balay at mcs.anl.gov> wrote:
> > 
> > > Did you run 'make test' after insatalling PETSc? Were there errors with
> > > this test?
> > >
> > > [you can send us corresponding test.log]
> > >
> > > Satish
> > >
> > > On Tue, 21 Mar 2017, Bikash Kanungo wrote:
> > >
> > > > Hi,
> > > >
> > > > I have recently installed petsc-3.7.5. However, while linking petsc with
> > > my
> > > > code, I get the following compilation error:
> > > >
> > > > /home/bikashk/softwares/femdft_softwares/petsc/opt_3.
> > > 7.5_mvapich2_64bit_complex/include/petscdraw.h(335):
> > > > error: identifier "jmp_buf" is undefined
> > > >   PETSC_EXTERN jmp_buf PetscXIOErrorHandlerJumpBuf;
> > > >
> > > >
> > > > I used the following configure options while compiling petsc:
> > > > ./configure
> > > > --prefix=/home/bikashk/softwares/femdft_softwares/
> > > petsc/opt_3.7.5_mvapich2_64bit_complex
> > > > --with-debugging=no --with-scalar-type=complex CFLAGS="-O3 -xcore-avx2"
> > > > CXXFLAGS="-O3 -xcore-avx2" --with-mpi-dir=/opt/mvapich2/intel/ib/
> > > > -with-blas-lib="-Wl,--start-group
> > > > /opt/intel/composer_xe_2015.2.164/mkl/lib/intel64/libmkl_intel_lp64.a
> > > > /opt/intel/composer_xe_2015.2.164/mkl/lib/intel64/libmkl_sequential.a
> > > > /opt/intel/composer_xe_2015.2.164/mkl/lib/intel64/libmkl_core.a
> > > > -Wl,--end-group -lpthread -lm" --with-lapack-lib="-Wl,--start-group
> > > > /opt/intel/composer_xe_2015.2.164/mkl/lib/intel64/libmkl_intel_lp64.a
> > > > /opt/intel/composer_xe_2015.2.164/mkl/lib/intel64/libmkl_sequential.a
> > > > /opt/intel/composer_xe_2015.2.164/mkl/lib/intel64/libmkl_core.a
> > > > -Wl,--end-group -lpthread -lm" --with-cxx-dialect=C++11
> > > >
> > > > I would really appreciate any help on how to fix it.
> > > >
> > > > Thanks,
> > > > Bikash
> > > >
> > >
> > >
> > 
> > 
> > 
> 
>