[petsc-users] petsc4py --with-64-bit-indices

[Satish Balay]

How about using --download-fblaslapack instead of MKL?

Satish

On Sun, 18 Dec 2016, Aurelien Ponte wrote:

> Allright I got the following to complete:
> 
> ### install pip:
> module load python/2.7.10_gnu-4.9.2
> wget https://bootstrap.pypa.io/get-pip.py
> python get-pip.py --user
> # edit .cshrc: set path = ($path $home/.local/bin)  + setenv LD_LIBRARY_PATH
> /home1/caparmor/aponte/.local/lib:${LD_LIBRARY_PATH}
> 
> #
> setenv MPICC mpiicc
> pip install --user --upgrade mpi4py
> pip install --user --upgrade numpy
> setenv PETSC_CONFIGURE_OPTIONS '--with-64-bit-indices
> --with-blas-lapack-dir=/appli/intel/Compiler/11.1/073/mkl/lib/em64t'
> pip install --user petsc petsc4py
> 
> But now I get the following at run time:
> *** libmkl_mc3.so *** failed with error :
> /appli/intel/Compiler/11.1/073/mkl/lib/em64t/libmkl_mc3.so: undefined symbol:
> mkl_dft_commit_descriptor_s_c2c_md_omp
> *** libmkl_def.so *** failed with error :
> /appli/intel/Compiler/11.1/073/mkl/lib/em64t/libmkl_def.so: undefined symbol:
> mkl_dft_commit_descriptor_s_c2c_md_omp
> MKL FATAL ERROR: Cannot load neither libmkl_mc3.so nor libmkl_def.so
> MKL FATAL ERROR: Cannot load neither libmkl_mc3.so nor libmkl_def.so
> 
> 
> Any ideas?
> 
> I will also try the other approach (from source).
> 
> thanks
> 
> aurelien
> 
> 
> 
> 
> Le 17/12/2016 à 22:36, Lawrence Mitchell a écrit :
> >
> > > On 17 Dec 2016, at 19:19, Barry Smith <bsmith at mcs.anl.gov> wrote:
> > >
> > >   Looks like --install-option= are options for pip not the underlying
> > >   package.
> > >
> > >   Lisandro,  how does one do what seems to be a simple request?
> > Set PETSC_CONFIGURE_OPTIONS to any additional flags you want to pass to
> > configure during pip install
> 
> 
>