[petsc-users] Petsc/3.5.0 make test failed

[Matthew Knepley]

On Thu, Jul 24, 2014 at 5:33 PM, Kai Song <ksong at lbl.gov> wrote:

> Hi Satish,
>
> Thanks for the quick response. I attached the make.log in this email, and
> a quick glance, I didn't see any obvious errors.
>

This never built the MUMPS directory, even though you have PETSC_HAVE_MUMPS
defined. I can see two
possible reasons for this:

  1) You distribution as missing files

  2) You have two copies of PETSc fighting each other here (old PETSC_DIR?)

Can you make sure you have the file mumps.c in

  src/mat/impls/aij/mpi/mumps

Jed, how do we check what make is doing here?

   Matt


> Please let me know if you need any additional informations.
>
> Thanks,
>
> Kai
>
>
>
> On Thu, Jul 24, 2014 at 5:17 PM, Satish Balay <balay at mcs.anl.gov> wrote:
>
>> Perhaps there were errors during the build. Can you send us make.log
>> for this build?
>>
>> Satish
>>
>> On Thu, 24 Jul 2014, Kai Song wrote:
>>
>> > Hi Petsc community,
>> >
>> > I just installed petsc/3.5.0 on our RHEL-6 system, with gcc/4.4.7 and
>> > openmpi/1.6.5
>> >
>> > The program built and installed fine, but make test failed on the
>> following
>> > error:
>> > ================
>> > ...
>> > mpicc -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas
>> -g3
>> > -O0  -o ex19  ex19.o
>> > -L/clusterfs/voltaire/home/software/modules/petsc/3.5.0/lib  -lpetsc
>> > -Wl,-rpath,/clusterfs/voltaire/home/software/modules/petsc/3.5.0/lib
>> > -lcmumps -ldmumps -lsmumps -lzmumps -lmumps_common -lpord -lscalapack
>> > -lflapack -lfblas -lparmetis -lmetis -lX11 -lssl -lcrypto -lpthread
>> > -L/global/software/sl-6.x86_64/modules/gcc/4.4.7/openmpi/1.6.5-gcc/lib
>> > -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -lmpi_f90 -lmpi_f77 -lgfortran
>> -lm
>> > -lmpi_cxx -lstdc++ -lmpi_cxx -lstdc++ -ldl -lmpi -lnuma -lrt -lnsl
>> -lutil
>> > -lgcc_s -lpthread -ldl
>> > /clusterfs/voltaire/home/software/modules/petsc/3.5.0/lib/libpetsc.so:
>> > undefined reference to `MatGetFactor_aij_mumps'
>> > /clusterfs/voltaire/home/software/modules/petsc/3.5.0/lib/libpetsc.so:
>> > undefined reference to `MatGetFactor_baij_mumps'
>> > /clusterfs/voltaire/home/software/modules/petsc/3.5.0/lib/libpetsc.so:
>> > undefined reference to `MatPartitioningCreate_Parmetis'
>> > /clusterfs/voltaire/home/software/modules/petsc/3.5.0/lib/libpetsc.so:
>> > undefined reference to `MatGetFactor_sbaij_mumps'
>> > collect2: ld returned 1 exit status
>> > gmake[3]: [ex19] Error 1 (ignored)
>> > ...
>> > ================
>> >
>> > I used the following configure line:
>> > ./configure --prefix=/software/modules/petsc/3.5.0
>> >  --download-fblaslapack=1 --download-mumps=1 --download-parmetis=1
>> > --download-scalapack --download-metis=1
>> >
>> --with-mpi-dir=/global/software/sl-6.x86_64/modules/gcc/4.4.7/openmpi/1.6.5-gcc/
>> >
>> > Is there anything that I am missing in the built process? Any help
>> would be
>> > great appreciated!
>> >
>> > Thanks in advance!
>> >
>> > Kai
>> >
>> >
>>
>>
>
>
> --
> Kai Song
> <ksong at lbl.gov> 1.510.495.2180
> 1 Cyclotron Rd. Berkeley, CA94720, MS-50B 3209
> High Performance Computing Services (HPCS)
> Lawrence Berkeley National Laboratory - http://scs.lbl.gov
>



-- 
What most experimenters take for granted before they begin their
experiments is infinitely more interesting than any results to which their
experiments lead.
-- Norbert Wiener
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