<div dir="ltr"><div class="gmail_extra"><div class="gmail_quote">On Thu, Jul 24, 2014 at 5:33 PM, Kai Song <span dir="ltr"><<a href="mailto:ksong@lbl.gov" target="_blank">ksong@lbl.gov</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
<div dir="ltr">Hi Satish,<div><br></div><div>Thanks for the quick response. I attached the make.log in this email, and a quick glance, I didn't see any obvious errors.</div></div></blockquote><div><br></div><div>This never built the MUMPS directory, even though you have PETSC_HAVE_MUMPS defined. I can see two</div>
<div>possible reasons for this:</div><div><br></div><div> 1) You distribution as missing files</div><div><br></div><div> 2) You have two copies of PETSc fighting each other here (old PETSC_DIR?)</div><div><br></div><div>
Can you make sure you have the file mumps.c in</div><div><br></div><div> src/mat/impls/aij/mpi/mumps</div><div><br></div><div>Jed, how do we check what make is doing here?</div><div><br></div><div> Matt</div><div> </div>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div dir="ltr"><div>Please let me know if you need any additional informations.</div>
<div><br></div><div>Thanks,</div><div><br></div><div>Kai</div><div><br></div></div><div class="gmail_extra"><div><div class="h5"><br><br><div class="gmail_quote">On Thu, Jul 24, 2014 at 5:17 PM, Satish Balay <span dir="ltr"><<a href="mailto:balay@mcs.anl.gov" target="_blank">balay@mcs.anl.gov</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">Perhaps there were errors during the build. Can you send us make.log<br>
for this build?<br>
<span><font color="#888888"><br>
Satish<br>
</font></span><div><div><br>
On Thu, 24 Jul 2014, Kai Song wrote:<br>
<br>
> Hi Petsc community,<br>
><br>
> I just installed petsc/3.5.0 on our RHEL-6 system, with gcc/4.4.7 and<br>
> openmpi/1.6.5<br>
><br>
> The program built and installed fine, but make test failed on the following<br>
> error:<br>
> ================<br>
> ...<br>
> mpicc -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3<br>
> -O0 -o ex19 ex19.o<br>
> -L/clusterfs/voltaire/home/software/modules/petsc/3.5.0/lib -lpetsc<br>
> -Wl,-rpath,/clusterfs/voltaire/home/software/modules/petsc/3.5.0/lib<br>
> -lcmumps -ldmumps -lsmumps -lzmumps -lmumps_common -lpord -lscalapack<br>
> -lflapack -lfblas -lparmetis -lmetis -lX11 -lssl -lcrypto -lpthread<br>
> -L/global/software/sl-6.x86_64/modules/gcc/4.4.7/openmpi/1.6.5-gcc/lib<br>
> -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -lmpi_f90 -lmpi_f77 -lgfortran -lm<br>
> -lmpi_cxx -lstdc++ -lmpi_cxx -lstdc++ -ldl -lmpi -lnuma -lrt -lnsl -lutil<br>
> -lgcc_s -lpthread -ldl<br>
> /clusterfs/voltaire/home/software/modules/petsc/3.5.0/lib/libpetsc.so:<br>
> undefined reference to `MatGetFactor_aij_mumps'<br>
> /clusterfs/voltaire/home/software/modules/petsc/3.5.0/lib/libpetsc.so:<br>
> undefined reference to `MatGetFactor_baij_mumps'<br>
> /clusterfs/voltaire/home/software/modules/petsc/3.5.0/lib/libpetsc.so:<br>
> undefined reference to `MatPartitioningCreate_Parmetis'<br>
> /clusterfs/voltaire/home/software/modules/petsc/3.5.0/lib/libpetsc.so:<br>
> undefined reference to `MatGetFactor_sbaij_mumps'<br>
> collect2: ld returned 1 exit status<br>
> gmake[3]: [ex19] Error 1 (ignored)<br>
> ...<br>
> ================<br>
><br>
> I used the following configure line:<br>
> ./configure --prefix=/software/modules/petsc/3.5.0<br>
> --download-fblaslapack=1 --download-mumps=1 --download-parmetis=1<br>
> --download-scalapack --download-metis=1<br>
> --with-mpi-dir=/global/software/sl-6.x86_64/modules/gcc/4.4.7/openmpi/1.6.5-gcc/<br>
><br>
> Is there anything that I am missing in the built process? Any help would be<br>
> great appreciated!<br>
><br>
> Thanks in advance!<br>
><br>
> Kai<br>
><br>
><br>
<br>
</div></div></blockquote></div><br><br clear="all"><div><br></div></div></div><div class="">-- <br>Kai Song<br><<a href="mailto:ksong@lbl.gov" target="_blank">ksong@lbl.gov</a>> <a href="tel:1.510.495.2180" value="+15104952180" target="_blank">1.510.495.2180</a><br>
1 Cyclotron Rd. Berkeley, CA94720, MS-50B 3209<br>
High Performance Computing Services (HPCS) <br>Lawrence Berkeley National Laboratory - <a href="http://scs.lbl.gov" target="_blank">http://scs.lbl.gov</a>
</div></div>
</blockquote></div><br><br clear="all"><div><br></div>-- <br>What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead.<br>
-- Norbert Wiener
</div></div>