[petsc-users] How to configure PETSc with gcc-4.9

[Matthew Knepley]

On Thu, Apr 24, 2014 at 9:27 PM, Justin Dong <jsd1 at rice.edu> wrote:

> Hi all,
>
> I'm trying to configure PETSc on Mac OS X with gcc-4.9. Currently, it's
> configured with gcc that comes with Xcode, but I want to use gcc-4.9 that I
> installed myself. I try:
>
>  ./configure --with-cc=gcc-4.9 --with-fc=gfortran
> --download-f-blas-lapack --download-mpich
>
>
> But while configuring MPICH it gets stuck indefinitely. I've included the
> output below after I terminate the process. I don't have this issue if I
> just configure with cc=gcc. Any ideas what the problem is here?
>
>From the stack trace, its just taking a long time. If it overruns the
timeout, it should just die. You can try
running using -useThreads=0 if you suspect the timeout is not working.

   Matt


> ^CTraceback (most recent call last):
>
>   File "./configure", line 10, in <module>
>
>     execfile(os.path.join(os.path.dirname(__file__), 'config',
> 'configure.py'))
>
>   File "./config/configure.py", line 372, in <module>
>
>     petsc_configure([])
>
>   File "./config/configure.py", line 287, in petsc_configure
>
>     framework.configure(out = sys.stdout)
>
>   File
> "/Users/justindong/Classes/CAAMResearch/petsc-3.4.4/config/BuildSystem/config/framework.py",
> line 933, in configure
>
>     child.configure()
>
>   File
> "/Users/justindong/Classes/CAAMResearch/petsc-3.4.4/config/BuildSystem/config/package.py",
> line 558, in configure
>
>     self.executeTest(self.configureLibrary)
>
>   File
> "/Users/justindong/Classes/CAAMResearch/petsc-3.4.4/config/BuildSystem/config/base.py",
> line 115, in executeTest
>
>     ret = apply(test, args,kargs)
>
>   File
> "/Users/justindong/Classes/CAAMResearch/petsc-3.4.4/config/BuildSystem/config/packages/MPI.py",
> line 748, in configureLibrary
>
>     config.package.Package.configureLibrary(self)
>
>   File
> "/Users/justindong/Classes/CAAMResearch/petsc-3.4.4/config/BuildSystem/config/package.py",
> line 486, in configureLibrary
>
>     for location, directory, lib, incl in self.generateGuesses():
>
>   File
> "/Users/justindong/Classes/CAAMResearch/petsc-3.4.4/config/BuildSystem/config/package.py",
> line 232, in generateGuesses
>
>     d = self.checkDownload(1)
>
>   File
> "/Users/justindong/Classes/CAAMResearch/petsc-3.4.4/config/BuildSystem/config/packages/MPI.py",
> line 351, in checkDownload
>
>     return config.package.Package.checkDownload(self, requireDownload)
>
>   File
> "/Users/justindong/Classes/CAAMResearch/petsc-3.4.4/config/BuildSystem/config/package.py",
> line 340, in checkDownload
>
>     return self.getInstallDir()
>
>   File
> "/Users/justindong/Classes/CAAMResearch/petsc-3.4.4/config/BuildSystem/config/package.py",
> line 187, in getInstallDir
>
>     return os.path.abspath(self.Install())
>
>   File
> "/Users/justindong/Classes/CAAMResearch/petsc-3.4.4/config/BuildSystem/config/packages/MPI.py",
> line 366, in Install
>
>     return self.InstallMPICH()
>
>   File
> "/Users/justindong/Classes/CAAMResearch/petsc-3.4.4/config/BuildSystem/config/packages/MPI.py",
> line 544, in InstallMPICH
>
>     output,err,ret  = config.base.Configure.executeShellCommand('cd
> '+mpichDir+' && ./configure '+args, timeout=2000, log = self.framework.log)
>
>   File
> "/Users/justindong/Classes/CAAMResearch/petsc-3.4.4/config/BuildSystem/script.py",
> line 254, in executeShellCommand
>
>     (output, error, status) = runInShell(command, log, cwd)
>
>   File
> "/Users/justindong/Classes/CAAMResearch/petsc-3.4.4/config/BuildSystem/script.py",
> line 243, in runInShell
>
>     thread.join(timeout)
>
>   File
> "/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/threading.py",
> line 958, in join
>
>     self.__block.wait(delay)
>
>   File
> "/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/threading.py",
> line 358, in wait
>
>     _sleep(delay)
>
> KeyboardInterrupt
>
>
>
> Sincerely,
>
> Justin
>



-- 
What most experimenters take for granted before they begin their
experiments is infinitely more interesting than any results to which their
experiments lead.
-- Norbert Wiener
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