[petsc-users] How to configure PETSc with gcc-4.9

[Justin Dong]

Hi all,

I'm trying to configure PETSc on Mac OS X with gcc-4.9. Currently, it's
configured with gcc that comes with Xcode, but I want to use gcc-4.9 that I
installed myself. I try:

 ./configure --with-cc=gcc-4.9 --with-fc=gfortran --download-f-blas-lapack
--download-mpich


But while configuring MPICH it gets stuck indefinitely. I've included the
output below after I terminate the process. I don't have this issue if I
just configure with cc=gcc. Any ideas what the problem is here?


^CTraceback (most recent call last):

  File "./configure", line 10, in <module>

    execfile(os.path.join(os.path.dirname(__file__), 'config',
'configure.py'))

  File "./config/configure.py", line 372, in <module>

    petsc_configure([])

  File "./config/configure.py", line 287, in petsc_configure

    framework.configure(out = sys.stdout)

  File
"/Users/justindong/Classes/CAAMResearch/petsc-3.4.4/config/BuildSystem/config/framework.py",
line 933, in configure

    child.configure()

  File
"/Users/justindong/Classes/CAAMResearch/petsc-3.4.4/config/BuildSystem/config/package.py",
line 558, in configure

    self.executeTest(self.configureLibrary)

  File
"/Users/justindong/Classes/CAAMResearch/petsc-3.4.4/config/BuildSystem/config/base.py",
line 115, in executeTest

    ret = apply(test, args,kargs)

  File
"/Users/justindong/Classes/CAAMResearch/petsc-3.4.4/config/BuildSystem/config/packages/MPI.py",
line 748, in configureLibrary

    config.package.Package.configureLibrary(self)

  File
"/Users/justindong/Classes/CAAMResearch/petsc-3.4.4/config/BuildSystem/config/package.py",
line 486, in configureLibrary

    for location, directory, lib, incl in self.generateGuesses():

  File
"/Users/justindong/Classes/CAAMResearch/petsc-3.4.4/config/BuildSystem/config/package.py",
line 232, in generateGuesses

    d = self.checkDownload(1)

  File
"/Users/justindong/Classes/CAAMResearch/petsc-3.4.4/config/BuildSystem/config/packages/MPI.py",
line 351, in checkDownload

    return config.package.Package.checkDownload(self, requireDownload)

  File
"/Users/justindong/Classes/CAAMResearch/petsc-3.4.4/config/BuildSystem/config/package.py",
line 340, in checkDownload

    return self.getInstallDir()

  File
"/Users/justindong/Classes/CAAMResearch/petsc-3.4.4/config/BuildSystem/config/package.py",
line 187, in getInstallDir

    return os.path.abspath(self.Install())

  File
"/Users/justindong/Classes/CAAMResearch/petsc-3.4.4/config/BuildSystem/config/packages/MPI.py",
line 366, in Install

    return self.InstallMPICH()

  File
"/Users/justindong/Classes/CAAMResearch/petsc-3.4.4/config/BuildSystem/config/packages/MPI.py",
line 544, in InstallMPICH

    output,err,ret  = config.base.Configure.executeShellCommand('cd
'+mpichDir+' && ./configure '+args, timeout=2000, log = self.framework.log)

  File
"/Users/justindong/Classes/CAAMResearch/petsc-3.4.4/config/BuildSystem/script.py",
line 254, in executeShellCommand

    (output, error, status) = runInShell(command, log, cwd)

  File
"/Users/justindong/Classes/CAAMResearch/petsc-3.4.4/config/BuildSystem/script.py",
line 243, in runInShell

    thread.join(timeout)

  File
"/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/threading.py",
line 958, in join

    self.__block.wait(delay)

  File
"/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/threading.py",
line 358, in wait

    _sleep(delay)

KeyboardInterrupt



Sincerely,

Justin
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