[petsc-users] make all freezes

[Analabha Roy]

Update again:

 On a hunch, I went to a non-graphical tty where compilation worked! So I
installed all xorg-devel packages from repository and now compilation seems
to be working.

Guess it just needed those...

Thanks.



On Tue, Sep 17, 2013 at 1:24 PM, Analabha Roy <hariseldon99 at gmail.com>wrote:

> Update: Purging openmpi and reinstalling did not work. "make all" in
> $PETSC_DIR still freezes.
>
>
> On Tue, Sep 17, 2013 at 11:17 AM, Analabha Roy <hariseldon99 at gmail.com>wrote:
>
>> Hi,
>>
>> Sorry for the late reply
>>
>>
>> On Mon, Sep 16, 2013 at 7:03 PM, Matthew Knepley <knepley at gmail.com>wrote:
>>
>>> On Mon, Sep 16, 2013 at 1:18 AM, Analabha Roy <hariseldon99 at gmail.com>wrote:
>>>
>>>> Hi,
>>>>
>>>>  I just got a new laptop and installed linux mint KDE. Details below:
>>>>
>>>> samsung NP300E5X-U01IN:
>>>> Kernel 3.8.0-26-generic #38-Ubuntu SMP
>>>> Four Intel Unknown 800MHz processors, 16760.20 total bogomips, 3733M RAM
>>>> System library 2.17.0
>>>>
>>>>
>>>> I tried to compile petsc-3.4.2 with the following configuration
>>>>
>>>> ./configure --with-scalar-type=complex --with-c2html=0
>>>> --with-debugging=no --with-fortran-kernels=1 --with-hdf5=yes
>>>> --with-hdf5-dir=/usr --enable-parallel
>>>>
>>>>
>>>> The configure log is posted here<https://dl.dropboxusercontent.com/u/2769707/configure.log>(dropbox)
>>>>
>>>> The configure script seems to run okay, but running "make
>>>> PETSC_DIR=/usr/local/src/petsc-3.4.2 PETSC_ARCH=arch-linux2-c-opt all" or
>>>> "make all" causes the compile to hang with no output.
>>>>
>>>
>>> This sounds like a CMake problem on your machine. Please try running
>>>
>>>   make all-legacy
>>>
>>> although it seems like your Builder run succeeded.
>>>
>>
>>
>> I purged cmake using apt-get and reinstalled it from scratch. The problem
>> persists
>>
>> I also ran "make all-legacy". Same problem. No output. Just hangs.
>>
>>
>>
>>>
>>> Downgrading to a previous version of petsc does not seem to help. The
>>>> problem persists. Using default options "./configure
>>>> --with-scalar-type=complex" doesn;t seem to change anything either.
>>>>
>>>> Running ./config/builder.py works, but then "make test" hangs
>>>> similarly, as does running make on any example or any of my petsc sources.
>>>>
>>>
>>> This is different. It is likely that your MPI is not setup correctly to
>>> launch on this machine. Can you
>>> run any MPI job?
>>>
>>>
>> Yes. Both this hello world example<http://www.dartmouth.edu/~rc/classes/intro_mpi/hello_world_ex.html>and this calculation
>> of pi<http://www.mcs.anl.gov/research/projects/mpi/usingmpi/examples/simplempi/cpi_c.htm>compiles without errors and runs as expected.
>>
>>
>> Should I try purging openmpi and reinstalling?
>>
>>
>>>    Thanks,
>>>
>>>       Matt
>>>
>>>
>>>>  Thanks in advance,
>>>>
>>>>
>>>>
>>>>
>>>>
>>>> --
>>>> ---
>>>> *Analabha Roy*
>>>> C.S.I.R <http://www.csir.res.in>  Senior Research Associate<http://csirhrdg.res.in/poolsra.htm>
>>>> Saha Institute of Nuclear Physics <http://www.saha.ac.in>
>>>> Section 1, Block AF
>>>> Bidhannagar, Calcutta 700064
>>>> India
>>>> *Emails*: daneel at physics.utexas.edu, hariseldon99 at gmail.com
>>>> *Webpage*: http://www.ph.utexas.edu/~daneel/
>>>>
>>>
>>>
>>>
>>> --
>>> What most experimenters take for granted before they begin their
>>> experiments is infinitely more interesting than any results to which their
>>> experiments lead.
>>> -- Norbert Wiener
>>>
>>
>>
>>
>> --
>> ---
>> *Analabha Roy*
>> C.S.I.R <http://www.csir.res.in>  Senior Research Associate<http://csirhrdg.res.in/poolsra.htm>
>> Saha Institute of Nuclear Physics <http://www.saha.ac.in>
>> Section 1, Block AF
>> Bidhannagar, Calcutta 700064
>> India
>> *Emails*: daneel at physics.utexas.edu, hariseldon99 at gmail.com
>> *Webpage*: http://www.ph.utexas.edu/~daneel/
>>
>
>
>
> --
> ---
> *Analabha Roy*
> C.S.I.R <http://www.csir.res.in>  Senior Research Associate<http://csirhrdg.res.in/poolsra.htm>
> Saha Institute of Nuclear Physics <http://www.saha.ac.in>
> Section 1, Block AF
> Bidhannagar, Calcutta 700064
> India
> *Emails*: daneel at physics.utexas.edu, hariseldon99 at gmail.com
> *Webpage*: http://www.ph.utexas.edu/~daneel/
>



-- 
---
*Analabha Roy*
C.S.I.R <http://www.csir.res.in>  Senior Research
Associate<http://csirhrdg.res.in/poolsra.htm>
Saha Institute of Nuclear Physics <http://www.saha.ac.in>
Section 1, Block AF
Bidhannagar, Calcutta 700064
India
*Emails*: daneel at physics.utexas.edu, hariseldon99 at gmail.com
*Webpage*: http://www.ph.utexas.edu/~daneel/
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