[petsc-users] make all freezes

[Analabha Roy]

Update: Purging openmpi and reinstalling did not work. "make all" in
$PETSC_DIR still freezes.


On Tue, Sep 17, 2013 at 11:17 AM, Analabha Roy <hariseldon99 at gmail.com>wrote:

> Hi,
>
> Sorry for the late reply
>
>
> On Mon, Sep 16, 2013 at 7:03 PM, Matthew Knepley <knepley at gmail.com>wrote:
>
>> On Mon, Sep 16, 2013 at 1:18 AM, Analabha Roy <hariseldon99 at gmail.com>wrote:
>>
>>> Hi,
>>>
>>>  I just got a new laptop and installed linux mint KDE. Details below:
>>>
>>> samsung NP300E5X-U01IN:
>>> Kernel 3.8.0-26-generic #38-Ubuntu SMP
>>> Four Intel Unknown 800MHz processors, 16760.20 total bogomips, 3733M RAM
>>> System library 2.17.0
>>>
>>>
>>> I tried to compile petsc-3.4.2 with the following configuration
>>>
>>> ./configure --with-scalar-type=complex --with-c2html=0
>>> --with-debugging=no --with-fortran-kernels=1 --with-hdf5=yes
>>> --with-hdf5-dir=/usr --enable-parallel
>>>
>>>
>>> The configure log is posted here<https://dl.dropboxusercontent.com/u/2769707/configure.log>(dropbox)
>>>
>>> The configure script seems to run okay, but running "make
>>> PETSC_DIR=/usr/local/src/petsc-3.4.2 PETSC_ARCH=arch-linux2-c-opt all" or
>>> "make all" causes the compile to hang with no output.
>>>
>>
>> This sounds like a CMake problem on your machine. Please try running
>>
>>   make all-legacy
>>
>> although it seems like your Builder run succeeded.
>>
>
>
> I purged cmake using apt-get and reinstalled it from scratch. The problem
> persists
>
> I also ran "make all-legacy". Same problem. No output. Just hangs.
>
>
>
>>
>> Downgrading to a previous version of petsc does not seem to help. The
>>> problem persists. Using default options "./configure
>>> --with-scalar-type=complex" doesn;t seem to change anything either.
>>>
>>> Running ./config/builder.py works, but then "make test" hangs similarly,
>>> as does running make on any example or any of my petsc sources.
>>>
>>
>> This is different. It is likely that your MPI is not setup correctly to
>> launch on this machine. Can you
>> run any MPI job?
>>
>>
> Yes. Both this hello world example<http://www.dartmouth.edu/~rc/classes/intro_mpi/hello_world_ex.html>and this calculation
> of pi<http://www.mcs.anl.gov/research/projects/mpi/usingmpi/examples/simplempi/cpi_c.htm>compiles without errors and runs as expected.
>
>
> Should I try purging openmpi and reinstalling?
>
>
>>    Thanks,
>>
>>       Matt
>>
>>
>>>  Thanks in advance,
>>>
>>>
>>>
>>>
>>>
>>> --
>>> ---
>>> *Analabha Roy*
>>> C.S.I.R <http://www.csir.res.in>  Senior Research Associate<http://csirhrdg.res.in/poolsra.htm>
>>> Saha Institute of Nuclear Physics <http://www.saha.ac.in>
>>> Section 1, Block AF
>>> Bidhannagar, Calcutta 700064
>>> India
>>> *Emails*: daneel at physics.utexas.edu, hariseldon99 at gmail.com
>>> *Webpage*: http://www.ph.utexas.edu/~daneel/
>>>
>>
>>
>>
>> --
>> What most experimenters take for granted before they begin their
>> experiments is infinitely more interesting than any results to which their
>> experiments lead.
>> -- Norbert Wiener
>>
>
>
>
> --
> ---
> *Analabha Roy*
> C.S.I.R <http://www.csir.res.in>  Senior Research Associate<http://csirhrdg.res.in/poolsra.htm>
> Saha Institute of Nuclear Physics <http://www.saha.ac.in>
> Section 1, Block AF
> Bidhannagar, Calcutta 700064
> India
> *Emails*: daneel at physics.utexas.edu, hariseldon99 at gmail.com
> *Webpage*: http://www.ph.utexas.edu/~daneel/
>



-- 
---
*Analabha Roy*
C.S.I.R <http://www.csir.res.in>  Senior Research
Associate<http://csirhrdg.res.in/poolsra.htm>
Saha Institute of Nuclear Physics <http://www.saha.ac.in>
Section 1, Block AF
Bidhannagar, Calcutta 700064
India
*Emails*: daneel at physics.utexas.edu, hariseldon99 at gmail.com
*Webpage*: http://www.ph.utexas.edu/~daneel/
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