<div dir="ltr"><div><div><div>Update again:<br><br></div> On a hunch, I went to a non-graphical tty where compilation worked! So I installed all xorg-devel packages from repository and now compilation seems to be working.<br>
<br></div>Guess it just needed those...<br><br></div>Thanks.<br><br></div><div class="gmail_extra"><br><br><div class="gmail_quote">On Tue, Sep 17, 2013 at 1:24 PM, Analabha Roy <span dir="ltr"><<a href="mailto:hariseldon99@gmail.com" target="_blank">hariseldon99@gmail.com</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div dir="ltr">Update: Purging openmpi and reinstalling did not work. "make all" in $PETSC_DIR still freezes.<br>
</div><div class="HOEnZb"><div class="h5"><div class="gmail_extra"><br><br><div class="gmail_quote">On Tue, Sep 17, 2013 at 11:17 AM, Analabha Roy <span dir="ltr"><<a href="mailto:hariseldon99@gmail.com" target="_blank">hariseldon99@gmail.com</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div dir="ltr">Hi,<br><br>Sorry for the late reply<br><div class="gmail_extra"><br><br><div class="gmail_quote"><div>
On Mon, Sep 16, 2013 at 7:03 PM, Matthew Knepley <span dir="ltr"><<a href="mailto:knepley@gmail.com" target="_blank">knepley@gmail.com</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div dir="ltr"><div>On Mon, Sep 16, 2013 at 1:18 AM, Analabha Roy <span dir="ltr"><<a href="mailto:hariseldon99@gmail.com" target="_blank">hariseldon99@gmail.com</a>></span> wrote:<br>
</div><div class="gmail_extra"><div class="gmail_quote"><div>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div dir="ltr"><div><div>Hi,<br><br></div> I just got a new laptop and installed linux mint KDE. Details below:<br><br>
samsung NP300E5X-U01IN:<br>Kernel 3.8.0-26-generic #38-Ubuntu SMP<br>Four Intel Unknown 800MHz processors, 16760.20 total bogomips, 3733M RAM<br>
System library 2.17.0<br><br><br></div>I tried to compile petsc-3.4.2 with the following configuration<br><br>./configure --with-scalar-type=complex --with-c2html=0 --with-debugging=no --with-fortran-kernels=1 --with-hdf5=yes --with-hdf5-dir=/usr --enable-parallel<br>
<div><br><br></div><div>The configure log is<a href="https://dl.dropboxusercontent.com/u/2769707/configure.log" target="_blank"> posted here</a> (dropbox)<br><br></div><div>The configure script seems to run okay, but running "make PETSC_DIR=/usr/local/src/petsc-3.4.2 PETSC_ARCH=arch-linux2-c-opt all" or "make all" causes the compile to hang with no output.<br>
</div></div></blockquote><div><br></div></div><div>This sounds like a CMake problem on your machine. Please try running</div><div><br></div><div> make all-legacy</div><div><br></div><div>although it seems like your Builder run succeeded.</div>
</div></div></div></blockquote><div><br><br></div></div><div>I purged cmake using apt-get and reinstalled it from scratch. The problem persists<br><br></div><div>I also ran "make all-legacy". Same problem. No output. Just hangs.<br>
</div><div><div><br> </div><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div dir="ltr"><div class="gmail_extra"><div class="gmail_quote"><div>
<div><br></div><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div dir="ltr"><div></div><div>Downgrading to a previous version of petsc does not seem to help. The problem persists. Using default options "./configure --with-scalar-type=complex" doesn;t seem to change anything either.<br>
<br></div><div>Running ./config/builder.py works, but then "make test" hangs similarly, as does running make on any example or any of my petsc sources.</div></div></blockquote><div><br></div></div><div>This is different. It is likely that your MPI is not setup correctly to launch on this machine. Can you</div>
<div>run any MPI job?</div><div><br></div></div></div></div></blockquote><div><br></div></div><div>Yes. Both <a href="http://www.dartmouth.edu/~rc/classes/intro_mpi/hello_world_ex.html" target="_blank">this hello world example</a> and this <a href="http://www.mcs.anl.gov/research/projects/mpi/usingmpi/examples/simplempi/cpi_c.htm" target="_blank">calculation of pi</a> compiles without errors and runs as expected.<br>
<br></div><div><br></div><div>Should I try purging openmpi and reinstalling?<br></div><div><div><div> </div><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
<div dir="ltr"><div class="gmail_extra">
<div class="gmail_quote"><div></div><div> Thanks,</div><div><br></div><div> Matt</div><div><div> </div><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
<div dir="ltr">
<div>Thanks in advance,<span><font color="#888888"><br><br></font></span></div><span><font color="#888888">
<div><br clear="all"><div><div><br><br><br>-- <br><font face="tahoma, sans-serif">---</font><div><font face="tahoma, sans-serif"><b>Analabha Roy</b></font></div><div><font face="tahoma, sans-serif"><a href="http://www.csir.res.in" target="_blank">C.S.I.R</a> <a href="http://csirhrdg.res.in/poolsra.htm" target="_blank">Senior Research Associate</a></font></div>
<div><font face="tahoma, sans-serif"><a href="http://www.saha.ac.in" target="_blank">Saha Institute of Nuclear Physics</a></font></div><div><font face="tahoma, sans-serif">Section 1, Block AF</font></div><div><font face="tahoma, sans-serif">Bidhannagar, Calcutta 700064</font></div>
<div><font face="tahoma, sans-serif">India</font></div><div><b style="font-family:tahoma,sans-serif">Emails</b><span style="font-family:tahoma,sans-serif">: </span><a href="mailto:daneel@physics.utexas.edu" style="font-family:tahoma,sans-serif" target="_blank">daneel@physics.utexas.edu</a><span style="font-family:tahoma,sans-serif">, </span><a href="mailto:hariseldon99@gmail.com" style="font-family:tahoma,sans-serif" target="_blank">hariseldon99@gmail.com</a></div>
<div><font face="tahoma, sans-serif"><b>Webpage</b>: <a href="http://www.ph.utexas.edu/~daneel/" target="_blank">http://www.ph.utexas.edu/~daneel/</a></font></div>
</div></div></div></font></span></div>
</blockquote></div></div><span><font color="#888888"><br><br clear="all"><div><br></div>-- <br>What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead.<br>
-- Norbert Wiener
</font></span></div></div>
</blockquote></div></div></div><div><div><br><br clear="all"><br>-- <br><font face="tahoma, sans-serif">---</font><div><font face="tahoma, sans-serif"><b>Analabha Roy</b></font></div><div><font face="tahoma, sans-serif"><a href="http://www.csir.res.in" target="_blank">C.S.I.R</a> <a href="http://csirhrdg.res.in/poolsra.htm" target="_blank">Senior Research Associate</a></font></div>
<div><font face="tahoma, sans-serif"><a href="http://www.saha.ac.in" target="_blank">Saha Institute of Nuclear Physics</a></font></div><div><font face="tahoma, sans-serif">Section 1, Block AF</font></div><div><font face="tahoma, sans-serif">Bidhannagar, Calcutta 700064</font></div>
<div><font face="tahoma, sans-serif">India</font></div><div><b style="font-family:tahoma,sans-serif">Emails</b><span style="font-family:tahoma,sans-serif">: </span><a href="mailto:daneel@physics.utexas.edu" style="font-family:tahoma,sans-serif" target="_blank">daneel@physics.utexas.edu</a><span style="font-family:tahoma,sans-serif">, </span><a href="mailto:hariseldon99@gmail.com" style="font-family:tahoma,sans-serif" target="_blank">hariseldon99@gmail.com</a></div>
<div><font face="tahoma, sans-serif"><b>Webpage</b>: <a href="http://www.ph.utexas.edu/~daneel/" target="_blank">http://www.ph.utexas.edu/~daneel/</a></font></div>
</div></div></div></div>
</blockquote></div><br><br clear="all"><br>-- <br><font face="tahoma, sans-serif">---</font><div><font face="tahoma, sans-serif"><b>Analabha Roy</b></font></div><div><font face="tahoma, sans-serif"><a href="http://www.csir.res.in" target="_blank">C.S.I.R</a> <a href="http://csirhrdg.res.in/poolsra.htm" target="_blank">Senior Research Associate</a></font></div>
<div><font face="tahoma, sans-serif"><a href="http://www.saha.ac.in" target="_blank">Saha Institute of Nuclear Physics</a></font></div><div><font face="tahoma, sans-serif">Section 1, Block AF</font></div><div><font face="tahoma, sans-serif">Bidhannagar, Calcutta 700064</font></div>
<div><font face="tahoma, sans-serif">India</font></div><div><b style="font-family:tahoma,sans-serif">Emails</b><span style="font-family:tahoma,sans-serif">: </span><a href="mailto:daneel@physics.utexas.edu" style="font-family:tahoma,sans-serif" target="_blank">daneel@physics.utexas.edu</a><span style="font-family:tahoma,sans-serif">, </span><a href="mailto:hariseldon99@gmail.com" style="font-family:tahoma,sans-serif" target="_blank">hariseldon99@gmail.com</a></div>
<div><font face="tahoma, sans-serif"><b>Webpage</b>: <a href="http://www.ph.utexas.edu/~daneel/" target="_blank">http://www.ph.utexas.edu/~daneel/</a></font></div>
</div>
</div></div></blockquote></div><br><br clear="all"><br>-- <br><font face="tahoma, sans-serif">---</font><div><font face="tahoma, sans-serif"><b>Analabha Roy</b></font></div><div><font face="tahoma, sans-serif"><a href="http://www.csir.res.in" target="_blank">C.S.I.R</a> <a href="http://csirhrdg.res.in/poolsra.htm" target="_blank">Senior Research Associate</a></font></div>
<div><font face="tahoma, sans-serif"><a href="http://www.saha.ac.in" target="_blank">Saha Institute of Nuclear Physics</a></font></div><div><font face="tahoma, sans-serif">Section 1, Block AF</font></div><div><font face="tahoma, sans-serif">Bidhannagar, Calcutta 700064</font></div>
<div><font face="tahoma, sans-serif">India</font></div><div><b style="font-family:tahoma,sans-serif">Emails</b><span style="font-family:tahoma,sans-serif">: </span><a href="mailto:daneel@physics.utexas.edu" style="font-family:tahoma,sans-serif" target="_blank">daneel@physics.utexas.edu</a><span style="font-family:tahoma,sans-serif">, </span><a href="mailto:hariseldon99@gmail.com" style="font-family:tahoma,sans-serif" target="_blank">hariseldon99@gmail.com</a></div>
<div><font face="tahoma, sans-serif"><b>Webpage</b>: <a href="http://www.ph.utexas.edu/~daneel/" target="_blank">http://www.ph.utexas.edu/~daneel/</a></font></div>
</div>