[petsc-users] Compiling PETSc 3.4.3 with ICC 14.0 and OpenMPI 1.6.5
Matthew Knepley
knepley at gmail.com
Thu Oct 31 10:55:04 CDT 2013
On Thu, Oct 31, 2013 at 10:47 AM, Maxime Boissonneault <
maxime.boissonneault at calculquebec.ca> wrote:
> Here is the configure.log with debugging.
>
Same compiler bug
make[1]: Leaving directory
`/software6/src/petsc-3.4.3-intel-try/externalpackages/SuperLU_DIST_3.3/SRC'
error #13002: unexpected CFE message argument: e. The staggered
cosine transform may be
warning #13003: message verification failed for: 556; reverting to
internal message
I am afraid if you want SuperLU, you will have to revert to a non-buggy
release of ICC or use GNU.
Thanks,
Matt
Maxime
>
> Le 2013-10-30 17:56, Matthew Knepley a écrit :
>
> On Wed, Oct 30, 2013 at 4:55 PM, Maxime Boissonneault <
> maxime.boissonneault at calculquebec.ca> wrote:
>
>> Le 2013-10-30 17:50, Matthew Knepley a écrit :
>>
>> On Wed, Oct 30, 2013 at 4:48 PM, Maxime Boissonneault <
>> maxime.boissonneault at calculquebec.ca> wrote:
>>
>>>
>>> Le 2013-10-30 17:45, Matthew Knepley a écrit :
>>>
>>> On Wed, Oct 30, 2013 at 4:41 PM, Maxime Boissonneault <
>>> maxime.boissonneault at calculquebec.ca> wrote:
>>>
>>>> Hi,
>>>> Here is the attached configure.log file.
>>>>
>>>> I will try the flag --with-debugging tomorrow.
>>>>
>>>
>>> Get rid of -O2: CFLAGS="-O2 -xHost -mkl -fPIC -m64" FFLAGS="-O2 -xHost
>>> -mkl -fPIC -m64" --prefix=/software6/libs/petsc/3.4.3_intel
>>>
>>> I had -O3 earlier. The error was the same. It is overwritten by the
>>> makefile anyway if you look in the details. This is not the source of the
>>> problem.
>>>
>>
>> I know, but if you leave it there with you use --with-debugging, it
>> could still cause the problem.
>>
>>
>>> --with-dynamic-loading
>>> --with-x=0 --with-mpi-compilers=1
>>> --with-mpi-dir=/software6/mpi/openmpi/1.6.5_intel
>>> --known-mpi-shared-libraries=1
>>> --with-debugging=no
>>> --with-shared-libraries=1
>>>
>>> --with-blas-lapack-dir=/software6/compilers/intel/composer_xe_2013_sp1/lib/intel64
>>> Don't need this --with-scalapack=1
>>>
>>> --with-scalapack-include=/software6/compilers/intel/composer_xe_2013_sp1/include
>>>
>>> --with-scalapack-lib=/software6/compilers/intel/composer_xe_2013_sp1/lib/intel64/libmkl_scalapack_lp64.a
>>> Don't need this --with-blacs=1
>>>
>>> --with-blacs-include=/software6/compilers/intel/composer_xe_2013_sp1/include
>>>
>>> --with-blacs-lib=/software6/compilers/intel/composer_xe_2013_sp1/lib/intel64/libmkl_blacs_openmpi_lp64.a
>>> --download-mumps=yes
>>> --download-ptscotch=1
>>> --download-superlu=yes
>>> --download-superlu_dist=yes
>>> --download-parmetis=yes
>>> --download-metis=yes
>>> --download-ml=yes
>>> This is deprecated. Use -pc_type gamg --download-prometheus=yes
>>>
>>> Which part is, download-ml ? or download-hypre ? Again, this is not the
>>> module that fails compiling however.
>>>
>>
>> I do not understand the question here. ML is algebraic multigrid,
>> similar to -pc_type gamg. Hypre has a few things in it.
>>
>> Some context : I am a system administrator installing this library
>> using the package list given to me by the user who will use it. I do not
>> know the details of what each package does.
>> I do not understand which part is depecrated and what I should replace
>> with -pc_type gamg.
>>
>
> The package 'prometheus' is deprecated. The same functionality is now
> available from within the library, so
> just remove --download-prometheus.
>
> Thanks,
>
> Matt
>
>
>> Matt
>>
>>
>>> Maxime
>>>
>>> --download-hypre=yes
>>>
>>> Matt
>>>
>>>>
>>>> Maxime
>>>>
>>>> Le 2013-10-30 16:49, Matthew Knepley a écrit :
>>>>
>>>> On Wed, Oct 30, 2013 at 3:39 PM, Maxime Boissonneault <
>>>> maxime.boissonneault at calculquebec.ca> wrote:
>>>>
>>>>> Hi,
>>>>> I am currently trying to compile PETSc 3.4.3 with ICC 14.0 and OpenMPI
>>>>> 1.6.5 and it fails SuperLU_Dist.
>>>>>
>>>>> I am getting the following error :
>>>>>
>>>>> 68303 /software6/mpi/openmpi/1.6.5_intel/bin/mpicc
>>>>> -I/software6/mpi/openmpi/1.6.5_intel/include
>>>>> -I/software6/mpi/openmpi/1.6.5_intel/include -O2 -xHost -mkl -fPIC -m64
>>>>> -fPIC -O3 -DAdd_ -DUSE_VENDOR_BLAS -c pdgstrf.c
>>>>> 68304 make[1]: Leaving directory
>>>>> `/software6/src/petsc-3.4.3-intel-try/externalpackages/SuperLU_DIST_3.3/SRC'
>>>>> 68305 error #13002: unexpected CFE message argument: e. The staggered
>>>>> cosine transform may be
>>>>> 68306 warning #13003: message verification failed for: 556; reverting
>>>>> to internal message
>>>>> 68307 pdgstrf.c(2672): warning #556: a value of type "int" cannot be
>>>>> assigned to an entity of type "MPI_Request"
>>>>> 68308 U_diag_blk_send_req[krow] = 1; /* flag outstanding
>>>>> Isend */
>>>>> 68309 ^
>>>>> 68310
>>>>> 68311 pdgstrf.c(2672): warning #152: Fatal error: Trigonometric
>>>>> Transform has failed to release the memory.
>>>>> 68312 U_diag_blk_send_req[krow] = 1; /* flag outstanding
>>>>> Isend */
>>>>> 68313 ^
>>>>> 68314
>>>>> 68315 compilation aborted for pdgstrf.c (code 1)
>>>>> 68316 make[1]: *** [pdgstrf.o] Error 1
>>>>>
>>>>> Anyone has a clue on to what might be going on ?
>>>>>
>>>>
>>>> 1) Always send configure.log
>>>>
>>>> 2) It looks like an Intel compiler bug. Try building with
>>>> --with-debugging first
>>>>
>>>> Matt
>>>>
>>>>
>>>>>
>>>>> --
>>>>> ---------------------------------
>>>>> Maxime Boissonneault
>>>>> Analyste de calcul - Calcul Québec, Université Laval
>>>>> Ph. D. en physique
>>>>>
>>>>>
>>>>
>>>>
>>>> --
>>>> What most experimenters take for granted before they begin their
>>>> experiments is infinitely more interesting than any results to which their
>>>> experiments lead.
>>>> -- Norbert Wiener
>>>>
>>>>
>>>>
>>>> --
>>>> ---------------------------------
>>>> Maxime Boissonneault
>>>> Analyste de calcul - Calcul Québec, Université Laval
>>>> Ph. D. en physique
>>>>
>>>>
>>>
>>>
>>> --
>>> What most experimenters take for granted before they begin their
>>> experiments is infinitely more interesting than any results to which their
>>> experiments lead.
>>> -- Norbert Wiener
>>>
>>>
>>>
>>> --
>>> ---------------------------------
>>> Maxime Boissonneault
>>> Analyste de calcul - Calcul Québec, Université Laval
>>> Ph. D. en physique
>>>
>>>
>>
>>
>> --
>> What most experimenters take for granted before they begin their
>> experiments is infinitely more interesting than any results to which their
>> experiments lead.
>> -- Norbert Wiener
>>
>>
>>
>> --
>> ---------------------------------
>> Maxime Boissonneault
>> Analyste de calcul - Calcul Québec, Université Laval
>> Ph. D. en physique
>>
>>
>
>
> --
> What most experimenters take for granted before they begin their
> experiments is infinitely more interesting than any results to which their
> experiments lead.
> -- Norbert Wiener
>
>
>
> --
> ---------------------------------
> Maxime Boissonneault
> Analyste de calcul - Calcul Québec, Université Laval
> Ph. D. en physique
>
>
--
What most experimenters take for granted before they begin their
experiments is infinitely more interesting than any results to which their
experiments lead.
-- Norbert Wiener
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