[petsc-users] Compiling PETSc 3.4.3 with ICC 14.0 and OpenMPI 1.6.5

Wed Oct 30 16:56:37 CDT 2013

On Wed, Oct 30, 2013 at 4:55 PM, Maxime Boissonneault <
maxime.boissonneault at calculquebec.ca> wrote:

>  Le 2013-10-30 17:50, Matthew Knepley a écrit :
>
> On Wed, Oct 30, 2013 at 4:48 PM, Maxime Boissonneault <
> maxime.boissonneault at calculquebec.ca> wrote:
>
>>
>> Le 2013-10-30 17:45, Matthew Knepley a écrit :
>>
>> On Wed, Oct 30, 2013 at 4:41 PM, Maxime Boissonneault <
>> maxime.boissonneault at calculquebec.ca> wrote:
>>
>>>  Hi,
>>> Here is the attached configure.log file.
>>>
>>> I will try the flag --with-debugging tomorrow.
>>>
>>
>>  Get rid of -O2: CFLAGS="-O2 -xHost -mkl -fPIC -m64" FFLAGS="-O2 -xHost
>> -mkl -fPIC -m64" --prefix=/software6/libs/petsc/3.4.3_intel
>>
>> I had -O3 earlier. The error was the same. It is overwritten by the
>> makefile anyway if you look in the details. This is not the source of the
>> problem.
>>
>
>  I know, but if you leave it there with you use --with-debugging, it
> could still cause the problem.
>
>
>>   --with-dynamic-loading
>> --with-x=0 --with-mpi-compilers=1
>> --with-mpi-dir=/software6/mpi/openmpi/1.6.5_intel
>>  --known-mpi-shared-libraries=1
>> --with-debugging=no
>> --with-shared-libraries=1
>>
>> --with-blas-lapack-dir=/software6/compilers/intel/composer_xe_2013_sp1/lib/intel64
>> Don't need this --with-scalapack=1
>>
>> --with-scalapack-include=/software6/compilers/intel/composer_xe_2013_sp1/include
>>
>> --with-scalapack-lib=/software6/compilers/intel/composer_xe_2013_sp1/lib/intel64/libmkl_scalapack_lp64.a
>> Don't need this --with-blacs=1
>>
>> --with-blacs-include=/software6/compilers/intel/composer_xe_2013_sp1/include
>>
>> --with-blacs-lib=/software6/compilers/intel/composer_xe_2013_sp1/lib/intel64/libmkl_blacs_openmpi_lp64.a
>> --download-mumps=yes
>> --download-ptscotch=1
>> --download-superlu=yes
>> --download-superlu_dist=yes
>>  --download-parmetis=yes
>> --download-metis=yes
>> --download-ml=yes
>> This is deprecated. Use -pc_type gamg --download-prometheus=yes
>>
>> Which part is, download-ml ? or download-hypre ? Again, this is not the
>> module that fails compiling however.
>>
>
>  I do not understand the question here. ML is algebraic multigrid,
> similar to -pc_type gamg. Hypre has a few things in it.
>
>    Some context : I am a system administrator installing this library
> using the package list given to me by the user who will use it. I do not
> know the details of what each package does.
> I do not understand which part is depecrated and what I should replace
> with -pc_type gamg.
>

The package 'prometheus' is deprecated. The same functionality is now
available from within the library, so
just remove --download-prometheus.

  Thanks,

     Matt

>      Matt
>
>
>>  Maxime
>>
>>  --download-hypre=yes
>>
>>    Matt
>>
>>>
>>>  Maxime
>>>
>>> Le 2013-10-30 16:49, Matthew Knepley a écrit :
>>>
>>> On Wed, Oct 30, 2013 at 3:39 PM, Maxime Boissonneault <
>>> maxime.boissonneault at calculquebec.ca> wrote:
>>>
>>>>  Hi,
>>>> I am currently trying to compile PETSc 3.4.3 with ICC 14.0 and OpenMPI
>>>> 1.6.5 and it fails SuperLU_Dist.
>>>>
>>>> I am getting the following error :
>>>>
>>>> 68303 /software6/mpi/openmpi/1.6.5_intel/bin/mpicc
>>>> -I/software6/mpi/openmpi/1.6.5_intel/include
>>>> -I/software6/mpi/openmpi/1.6.5_intel/include -O2 -xHost -mkl -fPIC -m64
>>>> -fPIC -O3  -DAdd_ -DUSE_VENDOR_BLAS -c pdgstrf.c
>>>> 68304 make[1]: Leaving directory
>>>> `/software6/src/petsc-3.4.3-intel-try/externalpackages/SuperLU_DIST_3.3/SRC'
>>>> 68305 error #13002: unexpected CFE message argument:  e. The staggered
>>>> cosine transform may be
>>>> 68306 warning #13003: message verification failed for: 556; reverting
>>>> to internal message
>>>> 68307 pdgstrf.c(2672): warning #556: a value of type "int" cannot be
>>>> assigned to an entity of type "MPI_Request"
>>>> 68308             U_diag_blk_send_req[krow] = 1; /* flag outstanding
>>>> Isend */
>>>> 68309                                       ^
>>>> 68310
>>>> 68311 pdgstrf.c(2672): warning #152: Fatal error: Trigonometric
>>>> Transform has failed to release the memory.
>>>> 68312             U_diag_blk_send_req[krow] = 1; /* flag outstanding
>>>> Isend */
>>>> 68313                                         ^
>>>> 68314
>>>> 68315 compilation aborted for pdgstrf.c (code 1)
>>>> 68316 make[1]: *** [pdgstrf.o] Error 1
>>>>
>>>> Anyone has a clue on to what might be going on ?
>>>>
>>>
>>>  1) Always send configure.log
>>>
>>>  2) It looks like an Intel compiler bug. Try building with
>>> --with-debugging first
>>>
>>>    Matt
>>>
>>>
>>>>
>>>> --
>>>> ---------------------------------
>>>> Maxime Boissonneault
>>>> Analyste de calcul - Calcul Québec, Université Laval
>>>> Ph. D. en physique
>>>>
>>>>
>>>
>>>
>>>  --
>>> What most experimenters take for granted before they begin their
>>> experiments is infinitely more interesting than any results to which their
>>> experiments lead.
>>> -- Norbert Wiener
>>>
>>>
>>>
>>> --
>>> ---------------------------------
>>> Maxime Boissonneault
>>> Analyste de calcul - Calcul Québec, Université Laval
>>> Ph. D. en physique
>>>
>>>
>>
>>
>>  --
>> What most experimenters take for granted before they begin their
>> experiments is infinitely more interesting than any results to which their
>> experiments lead.
>> -- Norbert Wiener
>>
>>
>>
>> --
>> ---------------------------------
>> Maxime Boissonneault
>> Analyste de calcul - Calcul Québec, Université Laval
>> Ph. D. en physique
>>
>>
>
>
>  --
> What most experimenters take for granted before they begin their
> experiments is infinitely more interesting than any results to which their
> experiments lead.
> -- Norbert Wiener
>
>
>
> --
> ---------------------------------
> Maxime Boissonneault
> Analyste de calcul - Calcul Québec, Université Laval
> Ph. D. en physique
>
>

-- 
What most experimenters take for granted before they begin their
experiments is infinitely more interesting than any results to which their
experiments lead.
-- Norbert Wiener
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