<div dir="ltr">On Thu, Oct 31, 2013 at 10:47 AM, Maxime Boissonneault <span dir="ltr"><<a href="mailto:maxime.boissonneault@calculquebec.ca" target="_blank">maxime.boissonneault@calculquebec.ca</a>></span> wrote:<br>
<div class="gmail_extra"><div class="gmail_quote"><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left-width:1px;border-left-color:rgb(204,204,204);border-left-style:solid;padding-left:1ex">
<div bgcolor="#FFFFFF" text="#000000">
<div>Here is the configure.log with
debugging.<br></div></div></blockquote><div><br></div><div>Same compiler bug</div><div><br></div><div> <span style="color:rgb(0,0,0);white-space:pre-wrap">make[1]: Leaving directory `/software6/src/petsc-3.4.3-intel-try/externalpackages/SuperLU_DIST_3.3/SRC'</span></div>
<pre style="color:rgb(0,0,0);word-wrap:break-word;white-space:pre-wrap">error #13002: unexpected CFE message argument: e. The staggered cosine transform may be
warning #13003: message verification failed for: 556; reverting to internal message</pre><div>I am afraid if you want SuperLU, you will have to revert to a non-buggy release of ICC or use GNU.</div><div><br></div><div> Thanks,</div>
<div><br></div><div> Matt</div><div><br></div><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left-width:1px;border-left-color:rgb(204,204,204);border-left-style:solid;padding-left:1ex"><div bgcolor="#FFFFFF" text="#000000">
<div>
Maxime<br>
<br>
Le 2013-10-30 17:56, Matthew Knepley a écrit :<br>
</div>
<blockquote type="cite">
<div dir="ltr">On Wed, Oct 30, 2013 at 4:55 PM, Maxime
Boissonneault <span dir="ltr"><<a href="mailto:maxime.boissonneault@calculquebec.ca" target="_blank">maxime.boissonneault@calculquebec.ca</a>></span>
wrote:<br>
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<div>Le 2013-10-30 17:50, Matthew Knepley a écrit :<br>
</div>
<blockquote type="cite">
<div dir="ltr">On Wed, Oct 30, 2013 at 4:48 PM, Maxime
Boissonneault <span dir="ltr"><<a href="mailto:maxime.boissonneault@calculquebec.ca" target="_blank">maxime.boissonneault@calculquebec.ca</a>></span>
wrote:<br>
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<div><br>
Le 2013-10-30 17:45, Matthew Knepley a
écrit :<br>
</div>
<blockquote type="cite">
<div dir="ltr">On Wed, Oct 30, 2013 at
4:41 PM, Maxime Boissonneault <span dir="ltr"><<a href="mailto:maxime.boissonneault@calculquebec.ca" target="_blank">maxime.boissonneault@calculquebec.ca</a>></span>
wrote:<br>
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<div>Hi,<br>
Here is the attached
configure.log file.<br>
<br>
I will try the flag
--with-debugging tomorrow.<br>
</div>
</div>
</blockquote>
<div><br>
</div>
Get rid of -O2: CFLAGS="-O2 -xHost
-mkl -fPIC -m64" FFLAGS="-O2 -xHost
-mkl -fPIC -m64"
--prefix=/software6/libs/petsc/3.4.3_intel</div>
</div>
</div>
</blockquote>
I had -O3 earlier. The error was the same.
It is overwritten by the makefile anyway if
you look in the details. This is not the
source of the problem.<br>
</div>
</blockquote>
<div><br>
</div>
<div>I know, but if you leave it there with you
use --with-debugging, it could still cause the
problem.</div>
<div> </div>
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<blockquote type="cite">
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<div class="gmail_quote">--with-dynamic-loading</div>
<div class="gmail_quote">--with-x=0
--with-mpi-compilers=1</div>
<div class="gmail_quote">--with-mpi-dir=/software6/mpi/openmpi/1.6.5_intel</div>
<div class="gmail_quote">
--known-mpi-shared-libraries=1</div>
<div class="gmail_quote">--with-debugging=no</div>
<div class="gmail_quote">--with-shared-libraries=1</div>
<div class="gmail_quote">--with-blas-lapack-dir=/software6/compilers/intel/composer_xe_2013_sp1/lib/intel64</div>
<div class="gmail_quote">Don't need
this --with-scalapack=1</div>
<div class="gmail_quote">--with-scalapack-include=/software6/compilers/intel/composer_xe_2013_sp1/include</div>
<div class="gmail_quote">--with-scalapack-lib=/software6/compilers/intel/composer_xe_2013_sp1/lib/intel64/libmkl_scalapack_lp64.a</div>
<div class="gmail_quote">Don't need
this --with-blacs=1</div>
<div class="gmail_quote">--with-blacs-include=/software6/compilers/intel/composer_xe_2013_sp1/include</div>
<div class="gmail_quote">--with-blacs-lib=/software6/compilers/intel/composer_xe_2013_sp1/lib/intel64/libmkl_blacs_openmpi_lp64.a</div>
<div class="gmail_quote">--download-mumps=yes</div>
<div class="gmail_quote">--download-ptscotch=1</div>
<div class="gmail_quote">--download-superlu=yes</div>
<div class="gmail_quote">--download-superlu_dist=yes</div>
<div class="gmail_quote">
--download-parmetis=yes</div>
<div class="gmail_quote">--download-metis=yes</div>
<div class="gmail_quote">--download-ml=yes</div>
<div class="gmail_quote">This is
deprecated. Use -pc_type gamg
--download-prometheus=yes</div>
</div>
</div>
</blockquote>
Which part is, download-ml ? or
download-hypre ? Again, this is not the
module that fails compiling however.<br>
</div>
</blockquote>
<div><br>
</div>
<div>I do not understand the question here. ML
is algebraic multigrid, similar to -pc_type
gamg. Hypre has a few things in it.</div>
<div><br>
</div>
</div>
</div>
</div>
</blockquote>
Some context : I am a system administrator installing
this library using the package list given to me by the
user who will use it. I do not know the details of what
each package does. <br>
I do not understand which part is depecrated and what I
should replace with -pc_type gamg.<br>
</div>
</blockquote>
<div><br>
</div>
<div>The package 'prometheus' is deprecated. The same
functionality is now available from within the library, so</div>
<div>just remove --download-prometheus.</div>
<div><br>
</div>
<div> Thanks,</div>
<div><br>
</div>
<div> Matt</div>
<div> </div>
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<div> </div>
<div> Matt</div>
<div> </div>
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<div bgcolor="#FFFFFF" text="#000000"> Maxime<br>
<blockquote type="cite">
<div dir="ltr">
<div class="gmail_extra">
<div class="gmail_quote">--download-hypre=yes</div>
<div class="gmail_quote"><br>
</div>
<div class="gmail_quote"> Matt<br>
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<div> Maxime<br>
<br>
Le 2013-10-30 16:49, Matthew
Knepley a écrit :<br>
</div>
<blockquote type="cite">
<div dir="ltr">On Wed, Oct 30,
2013 at 3:39 PM, Maxime
Boissonneault <span dir="ltr"><<a href="mailto:maxime.boissonneault@calculquebec.ca" target="_blank">maxime.boissonneault@calculquebec.ca</a>></span>
wrote:<br>
<div class="gmail_extra">
<div class="gmail_quote">
<blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left-width:1px;border-left-color:rgb(204,204,204);border-left-style:solid;padding-left:1ex">
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<div style="font-family:-moz-fixed;font-size:12px" lang="x-western">Hi,
<br>
I am currently
trying to compile
PETSc 3.4.3 with
ICC 14.0 and
OpenMPI 1.6.5 and
it fails
SuperLU_Dist.<br>
<br>
I am getting the
following error :
<br>
<br>
68303
/software6/mpi/openmpi/1.6.5_intel/bin/mpicc
-I/software6/mpi/openmpi/1.6.5_intel/include
-I/software6/mpi/openmpi/1.6.5_intel/include
-O2 -xHost -mkl
-fPIC -m64 -fPIC
-O3 -DAdd_
-DUSE_VENDOR_BLAS
-c pdgstrf.c <br>
68304 make[1]:
Leaving directory
`/software6/src/petsc-3.4.3-intel-try/externalpackages/SuperLU_DIST_3.3/SRC'<br>
68305 error
#13002: unexpected
CFE message
argument: e. The
staggered cosine
transform may be <br>
68306 warning
#13003: message
verification
failed for: 556;
reverting to
internal message <br>
68307
pdgstrf.c(2672):
warning #556: a
value of type
"int" cannot be
assigned to an
entity of type
"MPI_Request" <br>
68308
U_diag_blk_send_req[krow]
= 1; /* flag
outstanding Isend
*/ <br>
68309
^ <br>
68310 <br>
68311
pdgstrf.c(2672):
warning #152:
Fatal error:
Trigonometric
Transform has
failed to release
the memory. <br>
68312
U_diag_blk_send_req[krow]
= 1; /* flag
outstanding Isend
*/ <br>
68313
^ <br>
68314 <br>
68315 compilation
aborted for
pdgstrf.c (code 1)
<br>
68316 make[1]: ***
[pdgstrf.o] Error
1 <br>
<br>
Anyone has a clue
on to what might
be going on ? </div>
</div>
</blockquote>
<div><br>
</div>
<div>1) Always send
configure.log</div>
<div><br>
</div>
<div>2) It looks like an
Intel compiler bug.
Try building with
--with-debugging first</div>
<div><br>
</div>
<div> Matt</div>
<div> </div>
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<div style="font-family:-moz-fixed;font-size:12px" lang="x-western"><span><font color="#888888"><br>
<div><span>-- <br>
</span>---------------------------------
<br>
Maxime
Boissonneault
<br>
Analyste de
calcul -
Calcul Québec,
Université
Laval <br>
Ph. D. en
physique <br>
<br>
</div>
</font></span></div>
</div>
</blockquote>
</div>
<br>
<br clear="all">
<span><font color="#888888">
<div><br>
</div>
-- <br>
What most
experimenters take for
granted before they
begin their
experiments is
infinitely more
interesting than any
results to which their
experiments lead.<br>
-- Norbert Wiener </font></span></div>
<span><font color="#888888">
</font></span></div>
<span><font color="#888888"> </font></span></blockquote>
<span><font color="#888888"> <br>
<br>
<pre cols="72">--
---------------------------------
Maxime Boissonneault
Analyste de calcul - Calcul Québec, Université Laval
Ph. D. en physique</pre>
</font></span></div>
</blockquote>
</div>
<br>
<br clear="all">
<span><font color="#888888">
<div><br>
</div>
-- <br>
What most experimenters take for
granted before they begin their
experiments is infinitely more
interesting than any results to
which their experiments lead.<br>
-- Norbert Wiener </font></span></div>
<span><font color="#888888"> </font></span></div>
<span><font color="#888888"> </font></span></blockquote>
<span><font color="#888888"> <br>
<br>
<pre cols="72">--
---------------------------------
Maxime Boissonneault
Analyste de calcul - Calcul Québec, Université Laval
Ph. D. en physique</pre>
</font></span></div>
</blockquote>
</div>
<br>
<br clear="all">
<span><font color="#888888">
<div><br>
</div>
-- <br>
What most experimenters take for granted
before they begin their experiments is
infinitely more interesting than any results
to which their experiments lead.<br>
-- Norbert Wiener </font></span></div>
<span><font color="#888888"> </font></span></div>
<span><font color="#888888"> </font></span></blockquote>
<span><font color="#888888"> <br>
<br>
<pre cols="72">--
---------------------------------
Maxime Boissonneault
Analyste de calcul - Calcul Québec, Université Laval
Ph. D. en physique</pre>
</font></span></div>
</blockquote>
</div>
<br>
<br clear="all"><span class=""><font color="#888888">
<div><br>
</div>
-- <br>
What most experimenters take for granted before they begin
their experiments is infinitely more interesting than any
results to which their experiments lead.<br>
-- Norbert Wiener
</font></span></div><span class=""><font color="#888888">
</font></span></div><span class=""><font color="#888888">
</font></span></blockquote><span class=""><font color="#888888">
<br>
<br>
<pre cols="72">--
---------------------------------
Maxime Boissonneault
Analyste de calcul - Calcul Québec, Université Laval
Ph. D. en physique</pre>
</font></span></div>
</blockquote></div><br><br clear="all"><div><br></div>-- <br>What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead.<br>
-- Norbert Wiener
</div></div>