[petsc-users] Compiling PETSc 3.4.3 with ICC 14.0 and OpenMPI 1.6.5
Maxime Boissonneault
maxime.boissonneault at calculquebec.ca
Wed Oct 30 16:55:01 CDT 2013
Le 2013-10-30 17:50, Matthew Knepley a écrit :
> On Wed, Oct 30, 2013 at 4:48 PM, Maxime Boissonneault
> <maxime.boissonneault at calculquebec.ca
> <mailto:maxime.boissonneault at calculquebec.ca>> wrote:
>
>
> Le 2013-10-30 17:45, Matthew Knepley a écrit :
>> On Wed, Oct 30, 2013 at 4:41 PM, Maxime Boissonneault
>> <maxime.boissonneault at calculquebec.ca
>> <mailto:maxime.boissonneault at calculquebec.ca>> wrote:
>>
>> Hi,
>> Here is the attached configure.log file.
>>
>> I will try the flag --with-debugging tomorrow.
>>
>>
>> Get rid of -O2: CFLAGS="-O2 -xHost -mkl -fPIC -m64" FFLAGS="-O2
>> -xHost -mkl -fPIC -m64" --prefix=/software6/libs/petsc/3.4.3_intel
> I had -O3 earlier. The error was the same. It is overwritten by
> the makefile anyway if you look in the details. This is not the
> source of the problem.
>
>
> I know, but if you leave it there with you use --with-debugging, it
> could still cause the problem.
>
>> --with-dynamic-loading
>> --with-x=0 --with-mpi-compilers=1
>> --with-mpi-dir=/software6/mpi/openmpi/1.6.5_intel
>> --known-mpi-shared-libraries=1
>> --with-debugging=no
>> --with-shared-libraries=1
>> --with-blas-lapack-dir=/software6/compilers/intel/composer_xe_2013_sp1/lib/intel64
>> Don't need this --with-scalapack=1
>> --with-scalapack-include=/software6/compilers/intel/composer_xe_2013_sp1/include
>> --with-scalapack-lib=/software6/compilers/intel/composer_xe_2013_sp1/lib/intel64/libmkl_scalapack_lp64.a
>> Don't need this --with-blacs=1
>> --with-blacs-include=/software6/compilers/intel/composer_xe_2013_sp1/include
>> --with-blacs-lib=/software6/compilers/intel/composer_xe_2013_sp1/lib/intel64/libmkl_blacs_openmpi_lp64.a
>> --download-mumps=yes
>> --download-ptscotch=1
>> --download-superlu=yes
>> --download-superlu_dist=yes
>> --download-parmetis=yes
>> --download-metis=yes
>> --download-ml=yes
>> This is deprecated. Use -pc_type gamg --download-prometheus=yes
> Which part is, download-ml ? or download-hypre ? Again, this is
> not the module that fails compiling however.
>
>
> I do not understand the question here. ML is algebraic multigrid,
> similar to -pc_type gamg. Hypre has a few things in it.
>
Some context : I am a system administrator installing this library using
the package list given to me by the user who will use it. I do not know
the details of what each package does.
I do not understand which part is depecrated and what I should replace
with -pc_type gamg.
> Matt
>
> Maxime
>> --download-hypre=yes
>>
>> Matt
>>
>> Maxime
>>
>> Le 2013-10-30 16:49, Matthew Knepley a écrit :
>>> On Wed, Oct 30, 2013 at 3:39 PM, Maxime Boissonneault
>>> <maxime.boissonneault at calculquebec.ca
>>> <mailto:maxime.boissonneault at calculquebec.ca>> wrote:
>>>
>>> Hi,
>>> I am currently trying to compile PETSc 3.4.3 with ICC
>>> 14.0 and OpenMPI 1.6.5 and it fails SuperLU_Dist.
>>>
>>> I am getting the following error :
>>>
>>> 68303 /software6/mpi/openmpi/1.6.5_intel/bin/mpicc
>>> -I/software6/mpi/openmpi/1.6.5_intel/include
>>> -I/software6/mpi/openmpi/1.6.5_intel/include -O2 -xHost
>>> -mkl -fPIC -m64 -fPIC -O3 -DAdd_ -DUSE_VENDOR_BLAS -c
>>> pdgstrf.c
>>> 68304 make[1]: Leaving directory
>>> `/software6/src/petsc-3.4.3-intel-try/externalpackages/SuperLU_DIST_3.3/SRC'
>>> 68305 error #13002: unexpected CFE message argument: e.
>>> The staggered cosine transform may be
>>> 68306 warning #13003: message verification failed for:
>>> 556; reverting to internal message
>>> 68307 pdgstrf.c(2672): warning #556: a value of type
>>> "int" cannot be assigned to an entity of type "MPI_Request"
>>> 68308 U_diag_blk_send_req[krow] = 1; /* flag outstanding
>>> Isend */
>>> 68309 ^
>>> 68310
>>> 68311 pdgstrf.c(2672): warning #152: Fatal error:
>>> Trigonometric Transform has failed to release the memory.
>>> 68312 U_diag_blk_send_req[krow] = 1; /* flag outstanding
>>> Isend */
>>> 68313 ^
>>> 68314
>>> 68315 compilation aborted for pdgstrf.c (code 1)
>>> 68316 make[1]: *** [pdgstrf.o] Error 1
>>>
>>> Anyone has a clue on to what might be going on ?
>>>
>>>
>>> 1) Always send configure.log
>>>
>>> 2) It looks like an Intel compiler bug. Try building with
>>> --with-debugging first
>>>
>>> Matt
>>>
>>>
>>> --
>>> ---------------------------------
>>> Maxime Boissonneault
>>> Analyste de calcul - Calcul Québec, Université Laval
>>> Ph. D. en physique
>>>
>>>
>>>
>>>
>>> --
>>> What most experimenters take for granted before they begin
>>> their experiments is infinitely more interesting than any
>>> results to which their experiments lead.
>>> -- Norbert Wiener
>>
>>
>> --
>> ---------------------------------
>> Maxime Boissonneault
>> Analyste de calcul - Calcul Québec, Université Laval
>> Ph. D. en physique
>>
>>
>>
>>
>> --
>> What most experimenters take for granted before they begin their
>> experiments is infinitely more interesting than any results to
>> which their experiments lead.
>> -- Norbert Wiener
>
>
> --
> ---------------------------------
> Maxime Boissonneault
> Analyste de calcul - Calcul Québec, Université Laval
> Ph. D. en physique
>
>
>
>
> --
> What most experimenters take for granted before they begin their
> experiments is infinitely more interesting than any results to which
> their experiments lead.
> -- Norbert Wiener
--
---------------------------------
Maxime Boissonneault
Analyste de calcul - Calcul Québec, Université Laval
Ph. D. en physique
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