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    <div class="moz-cite-prefix">Le 2013-10-30 17:50, Matthew Knepley a
      écrit :<br>
    </div>
    <blockquote
cite="mid:CAMYG4GkPPmBTUmWDXT7P5z_hy3ftEe2p_n5ezbAJXyGvr4EqFw@mail.gmail.com"
      type="cite">
      <div dir="ltr">On Wed, Oct 30, 2013 at 4:48 PM, Maxime
        Boissonneault <span dir="ltr"><<a moz-do-not-send="true"
            href="mailto:maxime.boissonneault@calculquebec.ca"
            target="_blank">maxime.boissonneault@calculquebec.ca</a>></span>
        wrote:<br>
        <div class="gmail_extra">
          <div class="gmail_quote">
            <blockquote class="gmail_quote" style="margin:0 0 0
              .8ex;border-left:1px #ccc solid;padding-left:1ex">
              <div bgcolor="#FFFFFF" text="#000000">
                <div><br>
                  Le 2013-10-30 17:45, Matthew Knepley a écrit :<br>
                </div>
                <blockquote type="cite">
                  <div dir="ltr">On Wed, Oct 30, 2013 at 4:41 PM, Maxime
                    Boissonneault <span dir="ltr"><<a
                        moz-do-not-send="true"
                        href="mailto:maxime.boissonneault@calculquebec.ca"
                        target="_blank">maxime.boissonneault@calculquebec.ca</a>></span>
                    wrote:<br>
                    <div class="gmail_extra">
                      <div class="gmail_quote">
                        <blockquote class="gmail_quote"
                          style="margin:0px 0px 0px
0.8ex;border-left-width:1px;border-left-color:rgb(204,204,204);border-left-style:solid;padding-left:1ex">
                          <div bgcolor="#FFFFFF" text="#000000">
                            <div>Hi,<br>
                              Here is the attached configure.log file.<br>
                              <br>
                              I will try the flag --with-debugging
                              tomorrow.<br>
                            </div>
                          </div>
                        </blockquote>
                        <div><br>
                        </div>
                        Get rid of -O2: CFLAGS="-O2 -xHost -mkl -fPIC
                        -m64" FFLAGS="-O2 -xHost -mkl -fPIC -m64"
                        --prefix=/software6/libs/petsc/3.4.3_intel</div>
                    </div>
                  </div>
                </blockquote>
                I had -O3 earlier. The error was the same. It is
                overwritten by the makefile anyway if you look in the
                details. This is not the source of the problem.<br>
              </div>
            </blockquote>
            <div><br>
            </div>
            <div>I know, but if you leave it there with you use
              --with-debugging, it could still cause the problem.</div>
            <div> </div>
            <blockquote class="gmail_quote" style="margin:0 0 0
              .8ex;border-left:1px #ccc solid;padding-left:1ex">
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                <blockquote type="cite">
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                    <div class="gmail_extra">
                      <div class="gmail_quote">--with-dynamic-loading</div>
                      <div class="gmail_quote">--with-x=0
                        --with-mpi-compilers=1</div>
                      <div class="gmail_quote">--with-mpi-dir=/software6/mpi/openmpi/1.6.5_intel</div>
                      <div class="gmail_quote">
                        --known-mpi-shared-libraries=1</div>
                      <div class="gmail_quote">--with-debugging=no</div>
                      <div class="gmail_quote">--with-shared-libraries=1</div>
                      <div class="gmail_quote">--with-blas-lapack-dir=/software6/compilers/intel/composer_xe_2013_sp1/lib/intel64</div>
                      <div class="gmail_quote">Don't need this
                        --with-scalapack=1</div>
                      <div class="gmail_quote">--with-scalapack-include=/software6/compilers/intel/composer_xe_2013_sp1/include</div>
                      <div class="gmail_quote">--with-scalapack-lib=/software6/compilers/intel/composer_xe_2013_sp1/lib/intel64/libmkl_scalapack_lp64.a</div>
                      <div class="gmail_quote">Don't need this
                        --with-blacs=1</div>
                      <div class="gmail_quote">--with-blacs-include=/software6/compilers/intel/composer_xe_2013_sp1/include</div>
                      <div class="gmail_quote">--with-blacs-lib=/software6/compilers/intel/composer_xe_2013_sp1/lib/intel64/libmkl_blacs_openmpi_lp64.a</div>
                      <div class="gmail_quote">--download-mumps=yes</div>
                      <div class="gmail_quote">--download-ptscotch=1</div>
                      <div class="gmail_quote">--download-superlu=yes</div>
                      <div class="gmail_quote">--download-superlu_dist=yes</div>
                      <div class="gmail_quote"> --download-parmetis=yes</div>
                      <div class="gmail_quote">--download-metis=yes</div>
                      <div class="gmail_quote">--download-ml=yes</div>
                      <div class="gmail_quote">This is deprecated. Use
                        -pc_type gamg --download-prometheus=yes</div>
                    </div>
                  </div>
                </blockquote>
                Which part is, download-ml ? or download-hypre ? Again,
                this is not the module that fails compiling however.<br>
              </div>
            </blockquote>
            <div><br>
            </div>
            <div>I do not understand the question here. ML is algebraic
              multigrid, similar to -pc_type gamg. Hypre has a few
              things in it.</div>
            <div><br>
            </div>
          </div>
        </div>
      </div>
    </blockquote>
    Some context : I am a system administrator installing this library
    using the package list given to me by the user who will use it. I do
    not know the details of what each package does. <br>
    I do not understand which part is depecrated and what I should
    replace with -pc_type gamg.<br>
    <blockquote
cite="mid:CAMYG4GkPPmBTUmWDXT7P5z_hy3ftEe2p_n5ezbAJXyGvr4EqFw@mail.gmail.com"
      type="cite">
      <div dir="ltr">
        <div class="gmail_extra">
          <div class="gmail_quote">
            <div>
            </div>
            <div>  Matt</div>
            <div> </div>
            <blockquote class="gmail_quote" style="margin:0 0 0
              .8ex;border-left:1px #ccc solid;padding-left:1ex">
              <div bgcolor="#FFFFFF" text="#000000"> Maxime<br>
                <blockquote type="cite">
                  <div dir="ltr">
                    <div class="gmail_extra">
                      <div class="gmail_quote">--download-hypre=yes</div>
                      <div class="gmail_quote"><br>
                      </div>
                      <div class="gmail_quote">  Matt<br>
                         
                        <blockquote class="gmail_quote"
                          style="margin:0px 0px 0px
0.8ex;border-left-width:1px;border-left-color:rgb(204,204,204);border-left-style:solid;padding-left:1ex">
                          <div bgcolor="#FFFFFF" text="#000000">
                            <div> Maxime<br>
                              <br>
                              Le 2013-10-30 16:49, Matthew Knepley a
                              écrit :<br>
                            </div>
                            <blockquote type="cite">
                              <div dir="ltr">On Wed, Oct 30, 2013 at
                                3:39 PM, Maxime Boissonneault <span
                                  dir="ltr"><<a
                                    moz-do-not-send="true"
                                    href="mailto:maxime.boissonneault@calculquebec.ca"
                                    target="_blank">maxime.boissonneault@calculquebec.ca</a>></span>
                                wrote:<br>
                                <div class="gmail_extra">
                                  <div class="gmail_quote">
                                    <blockquote class="gmail_quote"
                                      style="margin:0px 0px 0px
0.8ex;border-left-width:1px;border-left-color:rgb(204,204,204);border-left-style:solid;padding-left:1ex">
                                      <div bgcolor="#FFFFFF"
                                        text="#000000">
                                        <div
                                          style="font-family:-moz-fixed;font-size:12px"
                                          lang="x-western">Hi, <br>
                                          I am currently trying to
                                          compile PETSc 3.4.3 with ICC
                                          14.0 and OpenMPI 1.6.5 and it
                                          fails SuperLU_Dist.<br>
                                          <br>
                                          I am getting the following
                                          error : <br>
                                          <br>
                                          68303
                                          /software6/mpi/openmpi/1.6.5_intel/bin/mpicc
                                          -I/software6/mpi/openmpi/1.6.5_intel/include


                                          -I/software6/mpi/openmpi/1.6.5_intel/include

                                          -O2 -xHost -mkl -fPIC -m64
                                          -fPIC -O3  -DAdd_
                                          -DUSE_VENDOR_BLAS -c pdgstrf.c
                                          <br>
                                          68304 make[1]: Leaving
                                          directory
`/software6/src/petsc-3.4.3-intel-try/externalpackages/SuperLU_DIST_3.3/SRC'<br>
                                          68305 error #13002: unexpected
                                          CFE message argument:  e. The
                                          staggered cosine transform may
                                          be <br>
                                          68306 warning #13003: message
                                          verification failed for: 556;
                                          reverting to internal message
                                          <br>
                                          68307 pdgstrf.c(2672): warning
                                          #556: a value of type "int"
                                          cannot be assigned to an
                                          entity of type "MPI_Request" <br>
                                          68308            
                                          U_diag_blk_send_req[krow] = 1;
                                          /* flag outstanding Isend */ <br>
                                          68309                                      

                                          ^ <br>
                                          68310 <br>
                                          68311 pdgstrf.c(2672): warning
                                          #152: Fatal error:
                                          Trigonometric Transform has
                                          failed to release the memory.
                                          <br>
                                          68312            
                                          U_diag_blk_send_req[krow] = 1;
                                          /* flag outstanding Isend */ <br>
                                          68313                                        

                                          ^ <br>
                                          68314 <br>
                                          68315 compilation aborted for
                                          pdgstrf.c (code 1) <br>
                                          68316 make[1]: *** [pdgstrf.o]
                                          Error 1 <br>
                                          <br>
                                          Anyone has a clue on to what
                                          might be going on ? </div>
                                      </div>
                                    </blockquote>
                                    <div><br>
                                    </div>
                                    <div>1) Always send configure.log</div>
                                    <div><br>
                                    </div>
                                    <div>2) It looks like an Intel
                                      compiler bug. Try building with
                                      --with-debugging first</div>
                                    <div><br>
                                    </div>
                                    <div>  Matt</div>
                                    <div>  </div>
                                    <blockquote class="gmail_quote"
                                      style="margin:0px 0px 0px
0.8ex;border-left-width:1px;border-left-color:rgb(204,204,204);border-left-style:solid;padding-left:1ex">
                                      <div bgcolor="#FFFFFF"
                                        text="#000000">
                                        <div
                                          style="font-family:-moz-fixed;font-size:12px"
                                          lang="x-western"><span><font
                                              color="#888888"><br>
                                              <div><span>-- <br>
                                                </span>---------------------------------

                                                <br>
                                                Maxime Boissonneault <br>
                                                Analyste de calcul -
                                                Calcul Québec,
                                                Université Laval <br>
                                                Ph. D. en physique <br>
                                                <br>
                                              </div>
                                            </font></span></div>
                                      </div>
                                    </blockquote>
                                  </div>
                                  <br>
                                  <br clear="all">
                                  <span><font color="#888888">
                                      <div><br>
                                      </div>
                                      -- <br>
                                      What most experimenters take for
                                      granted before they begin their
                                      experiments is infinitely more
                                      interesting than any results to
                                      which their experiments lead.<br>
                                      -- Norbert Wiener </font></span></div>
                                <span><font color="#888888"> </font></span></div>
                              <span><font color="#888888"> </font></span></blockquote>
                            <span><font color="#888888"> <br>
                                <br>
                                <pre cols="72">-- 
---------------------------------
Maxime Boissonneault
Analyste de calcul - Calcul Québec, Université Laval
Ph. D. en physique</pre>
                              </font></span></div>
                        </blockquote>
                      </div>
                      <br>
                      <br clear="all">
                      <span class="HOEnZb"><font color="#888888">
                          <div><br>
                          </div>
                          -- <br>
                          What most experimenters take for granted
                          before they begin their experiments is
                          infinitely more interesting than any results
                          to which their experiments lead.<br>
                          -- Norbert Wiener </font></span></div>
                    <span class="HOEnZb"><font color="#888888"> </font></span></div>
                  <span class="HOEnZb"><font color="#888888"> </font></span></blockquote>
                <span class="HOEnZb"><font color="#888888"> <br>
                    <br>
                    <pre cols="72">-- 
---------------------------------
Maxime Boissonneault
Analyste de calcul - Calcul Québec, Université Laval
Ph. D. en physique</pre>
                  </font></span></div>
            </blockquote>
          </div>
          <br>
          <br clear="all">
          <div><br>
          </div>
          -- <br>
          What most experimenters take for granted before they begin
          their experiments is infinitely more interesting than any
          results to which their experiments lead.<br>
          -- Norbert Wiener
        </div>
      </div>
    </blockquote>
    <br>
    <br>
    <pre class="moz-signature" cols="72">-- 
---------------------------------
Maxime Boissonneault
Analyste de calcul - Calcul Québec, Université Laval
Ph. D. en physique</pre>
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