[petsc-users] PETSc, C++ and Eclipse
Klaus Zimmermann
klaus.zimmermann at physik.uni-freiburg.de
Thu Jul 28 00:36:18 CDT 2011
Hello Matt,
"Undefined reference" is usually a linker error. As you noticed in the
console normally a two step process is applied: First the .c file(s)
is(are) compiled into .o files. Then they are linked. As Berend pointed
out the error happened in the treatment of the .c file. So why is it
linking at that stage? If you are using intel or gnu compiler it is
because in the compile flags there is no -c. If you scan through the
command that the original petcs makefile used you will find it for the
compiling stage, but not in the eclipse version.
Which compiler are you using?
There are a lot of flags. Did you manually modify the compile command
line? Is it possible you accidently removed -c?
Regards,
Klaus
Am 7/28/11 4:22 AM, schrieb Matt Bockman:
> Nevermind, I was completely wrong. I actually was able to build it using
> the commands that the original makefile produced (from PETSc), then when
> I went into Eclipse I forgot to press "clean"...derr.
>
> Matt
>
> On Wed, Jul 27, 2011 at 7:21 PM, Matt Bockman <mdbockma at ucsd.edu
> <mailto:mdbockma at ucsd.edu>> wrote:
>
> Hi Berend,
>
> First of all, you have been extremely helpful. Second, I was FINALLY
> able to compile the example through Eclipse. Sadly, it's the biggest
> breakthrough I've had in the last 2 weeks of my research :(.
>
> Here's what I did:
>
> I tried running what Eclipse was running from a terminal:
>
> Eclipse:
> /home/mdbockman/Documents/Research/codes/petsc/petsc-3.1-p8/linux-gnu-c-debug/bin/mpicc
> -I/home/mdbockman/Documents/Research/codes/petsc/petsc-3.1-p8/linux-gnu-c-debug/include
> -I/home/mdbockman/Documents/Research/codes/petsc/petsc-3.1-p8/include -O0
> -g3 -Wall -Wwrite-strings -Wno-strict-aliasing -MMD -MP -MF"ex1.d"
> -MT"ex1.d" -o"ex1.o" "../ex1.c"
>
> That did not work. So I ran make ex1 in the original ex1 tutorial
> directory and saw what the makefile was doing there:
>
> /home/mdbockman/Documents/Research/codes/petsc/petsc-3.1-p8/linux-gnu-c-debug/bin/mpicc
> -o ex1.o -c -Wall -Wwrite-strings -Wno-strict-aliasing -g3
> -I/home/mdbockman/Documents/Research/codes/petsc/petsc-3.1-p8/src/dm/mesh/sieve
> -I/home/mdbockman/Documents/Research/codes/petsc/petsc-3.1-p8/linux-gnu-c-debug/include
> -I/home/mdbockman/Documents/Research/codes/petsc/petsc-3.1-p8/include -I/home/mdbockman/Documents/Research/codes/petsc/petsc-3.1-p8/linux-gnu-c-debug/include
> -D__INSDIR__=src/ksp/ksp/examples/tutorials/ ex1.c
>
> /home/mdbockman/Documents/Research/codes/petsc/petsc-3.1-p8/linux-gnu-c-debug/bin/mpicc
> -Wall -Wwrite-strings -Wno-strict-aliasing -g3 -o ex1 ex1.o
> -Wl,-rpath,/home/mdbockman/Documents/Research/codes/petsc/petsc-3.1-p8/linux-gnu-c-debug/lib
> -L/home/mdbockman/Documents/Research/codes/petsc/petsc-3.1-p8/linux-gnu-c-debug/lib
> -lpetsc -lX11
> -Wl,-rpath,/home/mdbockman/Documents/Research/codes/petsc/petsc-3.1-p8/linux-gnu-c-debug/lib
> -L/home/mdbockman/Documents/Research/codes/petsc/petsc-3.1-p8/linux-gnu-c-debug/lib
> -lflapack -lfblas -lnsl -lrt -lm
> -L/home/mdbockman/Documents/Research/codes/petsc/petsc-3.1-p8/linux-gnu-c-debug/lib
> -L/usr/lib/x86_64-linux-gnu/gcc/x86_64-linux-gnu/4.5.2
> -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lpthread -lrt -lgcc_s
> -lmpichf90 -lgfortran -lm -lm -ldl -lmpich -lpthread -lrt -lgcc_s -ldl
>
> So apparently it was making an object file then linking. I then
> compared the one from Eclipse and found that I was missing
> -I/home/mdbockman/Documents/Research/codes/petsc/petsc-3.1-p8/src/dm/mesh/sieve.
> Why I need this I do not know (ideas?).
>
> But, after I found that I added it to my Include Directories and it
> compiled!
>
> Thanks Berend and others, I appreciate your persistence and aid.
>
> Matt
>
>
> On Wed, Jul 27, 2011 at 6:28 PM, Berend van Wachem
> <b.van-wachem at imperial.ac.uk <mailto:b.van-wachem at imperial.ac.uk>>
> wrote:
>
> Dear Matt,
>
> I can't directly see anything wrong with your settings.
>
> Have you tried compiling your example outside of eclipse with
> the PETSc makefile system?
>
> The previous pastebin output you emailed me does suggest that
> the error is during the compile stage: it cannot find the
> correct headers describing the implementations of
> PetscInitialize etc.
>
> Have you tried using the mpicc outside of eclipse directly on
> the directory?
>
> /home/mdbockman/Documents/__Research/codes/petsc/petsc-3.__1-p8/linux-gnu-c-debug/bin/__mpicc
> -I"/home/mdbockman/Documents/__Research/codes/petsc/petsc-3.__1-p8/include"
> -I"/home/mdbockman/Documents/__Research/codes/petsc/petsc-3.__1-p8/linux-gnu-c-debug/__include"
> -O0 -g3 -Wall -Wwrite-strings -Wno-strict-aliasing -MMD -MP
> -MF"ex1.d" -MT"ex1.d" -o"ex1.o" "../ex1.c"
>
> within the eclipse directory? This way you can more easily play
> around with it to see what is the problem.
>
> I'm sorry I can't be of more help.
>
> Regards,
> Berend.
>
>
>
> On 07/28/2011 02:20 AM, Matt Bockman wrote:
>
> Hi Berend,
>
> Under Library search path I have:
>
> /home/mdbockman/Documents/__Research/codes/petsc/petsc-3.__1-p8/linux-gnu-c-debug/lib
>
> For libraries I have:
>
> petsc
> X11
> flapack
> fblas
> nsl
> rt
> m
> dl
> mpich
> pthread
> rt
> gcc_s
> mpichf90
> gfortran
> m
> m
> dl
> mpich
> rt
> gcc_s
> dl
>
> I used the exact order as I found in petscmachineinfo.h file
> (see here:
> http://pastebin.com/cqzNgjJe)
>
> Thank you very much for your help Berend,
> Matt
>
> On Wed, Jul 27, 2011 at 6:11 PM, Berend van Wachem
> <b.van-wachem at imperial.ac.uk
> <mailto:b.van-wachem at imperial.ac.uk>
> <mailto:b.van-wachem at imperial.__ac.uk
> <mailto:b.van-wachem at imperial.ac.uk>>> wrote:
>
> Dear Matt,
>
>
> What do you have under
> Properties->C/C++ Build -> Settings -> GCC Linker
> Libraries for both
> "Libraries" and "Library Search Path"?
>
> Regards,
> Berend.
>
>
>
> On 07/28/2011 02:04 AM, Matt Bockman wrote:
>
> Hi Berend,
>
> Under Properties->C/C++ Build -> Settings -> GCC C
> Compiler ->
> Directories : Include paths (-I) I have:
>
>
> /home/mdbockman/Documents/____Research/codes/petsc/petsc-3.____1-p8/include
>
> /home/mdbockman/Documents/____Research/codes/petsc/petsc-3.____1-p8/linux-gnu-c-debug/__include
>
> Under Properties -> C/C++ BUild -> Environment -> I have
>
> PETSC_ARCH = linux-gnu-c-debug
> PETSC_DIR =
>
> /home/mdbockman/Documents/____Research/codes/petsc/petsc-3.____1-p8
>
> In my source file I have included petsc.h:
>
> #include "petsc.h"
>
> Thanks,
> Matt
>
> On Wed, Jul 27, 2011 at 5:54 PM, Berend van Wachem
> <b.van-wachem at imperial.ac.uk
> <mailto:b.van-wachem at imperial.ac.uk>
> <mailto:b.van-wachem at imperial.__ac.uk
> <mailto:b.van-wachem at imperial.ac.uk>>
> <mailto:b.van-wachem at imperial.
> <mailto:b.van-wachem at imperial.>____ac.uk <http://ac.uk>
> <mailto:b.van-wachem at imperial.__ac.uk
> <mailto:b.van-wachem at imperial.ac.uk>>>> wrote:
>
> Dear Matt,
>
> The error is definitely in the compiler stage: it
> cannot find that
> appropriate petsc.h include file.
> 1. Have you included petsc.h in the source file?
> 2. What do you have under
> <Your Project> -> Settings -> Includes
> ?
>
> Also, just to make sure, you can set the appropriate
> values for
> PETSC_DIR and PETSC_ARCH if you wish under
> <Your Project> -> Settings -> Environment
>
> Regards,
>
> Berend.
>
>
>
> On 07/28/2011 01:49 AM, Matt Bockman wrote:
>
> Hi Berend,
>
> Here is the complete output of the build:
>
> http//pastebin.com/Es4ms4EF
> <http://pastebin.com/Es4ms4EF> <http://pastebin.com/Es4ms4EF>
> <http://pastebin.com/Es4ms4EF>
>
>
> and by the 2nd to last line "collect2: ld returned 1
> exit status" I
> believe it is failing during the linking step. I'm
> not 100% sure
> though.
>
> Thanks for your quick response and help. Please advise,
>
> Matt
>
> On Wed, Jul 27, 2011 at 5:39 PM, Berend van Wachem
> <b.van-wachem at imperial.ac.uk
> <mailto:b.van-wachem at imperial.ac.uk>
> <mailto:b.van-wachem at imperial.__ac.uk
> <mailto:b.van-wachem at imperial.ac.uk>>
> <mailto:b.van-wachem at imperial.
> <mailto:b.van-wachem at imperial.>____ac.uk <http://ac.uk>
> <mailto:b.van-wachem at imperial.__ac.uk
> <mailto:b.van-wachem at imperial.ac.uk>>>
> <mailto:b.van-wachem at imperial
> <mailto:b.van-wachem at imperial>.
> <mailto:b.van-wachem at imperial
> <mailto:b.van-wachem at imperial>.__>____ac.uk <http://ac.uk>
> <http://ac.uk>
> <mailto:b.van-wachem at imperial.
> <mailto:b.van-wachem at imperial.>____ac.uk <http://ac.uk>
> <mailto:b.van-wachem at imperial.__ac.uk
> <mailto:b.van-wachem at imperial.ac.uk>>>>> wrote:
>
> Dear Matt,
>
> Does it say this during the compiling? Or linking?
>
> If it says this during the compiling, it means that
> eclipse cannot
> find the PETSc header files. So, it must be the
> setting of the
> "Includes". You might want to "hard-code" the
> directory, just to
> make sure.
>
> It is indeed not completely straightforward - eclipse
> has so many
> options. But trust me - many of them you will really
> learn to
> appreciate over time.
>
> Kind regards,
>
> Berend.
>
>
>
> On 07/28/2011 01:34 AM, Matt Bockman wrote:
>
> Thanks Berend for your thorough response,
>
> I have done what you have said but I still get the
> same error
> regarding
> "undefined references to PetscInitialize" etc. It's
> like I didn't
> include the petscksp.h file, but it's there. I even tried
> petsc.h to no
> avail.
>
> I'm not sure what the compiler is referring to when
> it says
> "Undefined
> references to ...". What I think this is is in the
> assembly code
> generated by the compiler, there is a PetscInitialize
> symbol
> that isn't
> found in the library. But I'm soooooooooo confused at
> this point
> :(. How
> did you guys all learn how to compile this?
>
> Matt
>
> On Wed, Jul 27, 2011 at 4:46 PM, Berend van Wachem
> <b.van-wachem at imperial.ac.uk
> <mailto:b.van-wachem at imperial.ac.uk>
> <mailto:b.van-wachem at imperial.__ac.uk
> <mailto:b.van-wachem at imperial.ac.uk>>
> <mailto:b.van-wachem at imperial.
> <mailto:b.van-wachem at imperial.>____ac.uk <http://ac.uk>
> <mailto:b.van-wachem at imperial.__ac.uk
> <mailto:b.van-wachem at imperial.ac.uk>>>
> <mailto:b.van-wachem at imperial
> <mailto:b.van-wachem at imperial>.
> <mailto:b.van-wachem at imperial
> <mailto:b.van-wachem at imperial>.__>____ac.uk <http://ac.uk>
> <http://ac.uk>
> <mailto:b.van-wachem at imperial.
> <mailto:b.van-wachem at imperial.>____ac.uk <http://ac.uk>
> <mailto:b.van-wachem at imperial.__ac.uk
> <mailto:b.van-wachem at imperial.ac.uk>>>>
> <mailto:b.van-wachem at imperial
> <mailto:b.van-wachem at imperial> <mailto:b.van-wachem at imperial
> <mailto:b.van-wachem at imperial>>__.
> <mailto:b.van-wachem at imperial
> <mailto:b.van-wachem at imperial>
> <mailto:b.van-wachem at imperial
> <mailto:b.van-wachem at imperial>>__.__>____ac.uk
> <http://ac.uk> <http://ac.uk>
> <http://ac.uk>
>
> <mailto:b.van-wachem at imperial
> <mailto:b.van-wachem at imperial>.
> <mailto:b.van-wachem at imperial
> <mailto:b.van-wachem at imperial>.__>____ac.uk <http://ac.uk>
> <http://ac.uk>
> <mailto:b.van-wachem at imperial.
> <mailto:b.van-wachem at imperial.>____ac.uk <http://ac.uk>
> <mailto:b.van-wachem at imperial.__ac.uk
> <mailto:b.van-wachem at imperial.ac.uk>>>>>> wrote:
>
> Dear Matt,
>
> I use Eclipse and have eclipse make the makefiles.
> It is just a matter of indicating to eclipse where
> the PETSc
> headers/libraries are to be found, so if you have a C
> project which
> needs PETSc headers and libraries:
>
> To do this, click on your managed C project with the
> right sided
> mouse button, select
>
> Properties -> C/C++ Build -> Settings
>
> Then you get a new window with on the right hand side
> the various
> setting options.
>
> Select Includes, and add the required PETSc paths. In
> my case I have
> added
> ${PETSC_DIR}/include
> ${PETSC_DIR}/${PETSC_ARCH}/__________include
>
> Then select "Libraries" under the header Linker
> and you should set the Library search path:
> ${PETSC_DIR}/${PETSC_ARCH}/lib
>
> and then the libraries, in my case:
> m, petsc, stdc++, mpichxx, mpich, lapack, blas,
> gfortran, dl,
> rt,gcc_s, pthread, X11
> (you can find these easily in
> $PETSC_DIR/$PETSC_ARCH/__________petscmachineinfo.h)
>
> The nice thing is that in eclipse you can easily
> switch between
> Debug/Release code, traverse into the PETSc source
> code etc. It's
> really a very productive tool with PETSc I've found.
>
> Let me know if you have any questions.
>
> Kind regards,
>
> Berend.
>
>
>
> On 07/27/2011 11:25 PM, Matt Bockman wrote:
>
> Thanks everyone for the help,
>
> I was able to compile a single example in Eclipse
> using the provided
> makefile. I'm pretty new to makefiles so it's a LOT
> to digest.
> I'm now
> manually creating a makefile for my project in
> Eclipse (and I've set
> Eclipse up to use a makefile that I create instead of
> automatically
> generating one). Unfortunately this is a big pain but
> since I can't
> figure out how to make Eclipse automatically include
> a few files
> in the
> makefile I don't really have any other choices :(.
>
> Thanks again,
> Matt
>
> On Wed, Jul 27, 2011 at 1:43 PM, Mohammad Mirzadeh
> <mirzadeh at gmail.com <mailto:mirzadeh at gmail.com>
> <mailto:mirzadeh at gmail.com <mailto:mirzadeh at gmail.com>>
> <mailto:mirzadeh at gmail.com
> <mailto:mirzadeh at gmail.com> <mailto:mirzadeh at gmail.com
> <mailto:mirzadeh at gmail.com>>>
> <mailto:mirzadeh at gmail.com
> <mailto:mirzadeh at gmail.com> <mailto:mirzadeh at gmail.com
> <mailto:mirzadeh at gmail.com>>
> <mailto:mirzadeh at gmail.com
> <mailto:mirzadeh at gmail.com> <mailto:mirzadeh at gmail.com
> <mailto:mirzadeh at gmail.com>>>>
> <mailto:mirzadeh at gmail.com
> <mailto:mirzadeh at gmail.com> <mailto:mirzadeh at gmail.com
> <mailto:mirzadeh at gmail.com>>
> <mailto:mirzadeh at gmail.com
> <mailto:mirzadeh at gmail.com> <mailto:mirzadeh at gmail.com
> <mailto:mirzadeh at gmail.com>>>
> <mailto:mirzadeh at gmail.com
> <mailto:mirzadeh at gmail.com> <mailto:mirzadeh at gmail.com
> <mailto:mirzadeh at gmail.com>>
> <mailto:mirzadeh at gmail.com
> <mailto:mirzadeh at gmail.com> <mailto:mirzadeh at gmail.com
> <mailto:mirzadeh at gmail.com>>>>>
> <mailto:mirzadeh at gmail.com
> <mailto:mirzadeh at gmail.com> <mailto:mirzadeh at gmail.com
> <mailto:mirzadeh at gmail.com>>
> <mailto:mirzadeh at gmail.com
> <mailto:mirzadeh at gmail.com> <mailto:mirzadeh at gmail.com
> <mailto:mirzadeh at gmail.com>>>
> <mailto:mirzadeh at gmail.com
> <mailto:mirzadeh at gmail.com> <mailto:mirzadeh at gmail.com
> <mailto:mirzadeh at gmail.com>>
> <mailto:mirzadeh at gmail.com
> <mailto:mirzadeh at gmail.com> <mailto:mirzadeh at gmail.com
> <mailto:mirzadeh at gmail.com>>>>
> <mailto:mirzadeh at gmail.com
> <mailto:mirzadeh at gmail.com> <mailto:mirzadeh at gmail.com
> <mailto:mirzadeh at gmail.com>>
> <mailto:mirzadeh at gmail.com
> <mailto:mirzadeh at gmail.com> <mailto:mirzadeh at gmail.com
> <mailto:mirzadeh at gmail.com>>>
> <mailto:mirzadeh at gmail.com
> <mailto:mirzadeh at gmail.com> <mailto:mirzadeh at gmail.com
> <mailto:mirzadeh at gmail.com>>
> <mailto:mirzadeh at gmail.com
> <mailto:mirzadeh at gmail.com> <mailto:mirzadeh at gmail.com
> <mailto:mirzadeh at gmail.com>>>>>__>__> wrote:
>
> There two problems(I think) in this code.
>
> 1) there is no main function in your source code. If
> this is the
> only file you are compiling, you need to change the
> function name to
> main.
> 2) linking should be done after object files are
> created. A simple
> g++ call would first compile the main file and then
> link the object
> to the petsc lib i.e
>
> g++ -c -I($PETSC_INCLUDE) main.cpp
> g++ -o main main.o $PETSC_LIBS
>
> alternatively, you could do it in a single line if
> you like
>
> g++ -o main -I($PETSC_INCLUDE) main.cpp $PETSC_LIBS
>
> my point is you should link to petsc after compiling
> your own code.
> So wherever in Eclipse that you are seting the
> parameters, make sure
> the $PETSC_LIBS is in the linker option and not compiler.
>
> Mohammad
>
>
> On Wed, Jul 27, 2011 at 12:39 PM, Matt Bockman
> <mdbockma at ucsd.edu <mailto:mdbockma at ucsd.edu>
> <mailto:mdbockma at ucsd.edu <mailto:mdbockma at ucsd.edu>>
> <mailto:mdbockma at ucsd.edu <mailto:mdbockma at ucsd.edu>
> <mailto:mdbockma at ucsd.edu <mailto:mdbockma at ucsd.edu>>>
> <mailto:mdbockma at ucsd.edu <mailto:mdbockma at ucsd.edu>
> <mailto:mdbockma at ucsd.edu <mailto:mdbockma at ucsd.edu>>
> <mailto:mdbockma at ucsd.edu <mailto:mdbockma at ucsd.edu>
> <mailto:mdbockma at ucsd.edu <mailto:mdbockma at ucsd.edu>>>>
> <mailto:mdbockma at ucsd.edu <mailto:mdbockma at ucsd.edu>
> <mailto:mdbockma at ucsd.edu <mailto:mdbockma at ucsd.edu>>
> <mailto:mdbockma at ucsd.edu <mailto:mdbockma at ucsd.edu>
> <mailto:mdbockma at ucsd.edu <mailto:mdbockma at ucsd.edu>>>
> <mailto:mdbockma at ucsd.edu <mailto:mdbockma at ucsd.edu>
> <mailto:mdbockma at ucsd.edu <mailto:mdbockma at ucsd.edu>>
> <mailto:mdbockma at ucsd.edu <mailto:mdbockma at ucsd.edu>
> <mailto:mdbockma at ucsd.edu <mailto:mdbockma at ucsd.edu>>>>>
> <mailto:mdbockma at ucsd.edu <mailto:mdbockma at ucsd.edu>
> <mailto:mdbockma at ucsd.edu <mailto:mdbockma at ucsd.edu>>
> <mailto:mdbockma at ucsd.edu <mailto:mdbockma at ucsd.edu>
> <mailto:mdbockma at ucsd.edu <mailto:mdbockma at ucsd.edu>>>
> <mailto:mdbockma at ucsd.edu <mailto:mdbockma at ucsd.edu>
> <mailto:mdbockma at ucsd.edu <mailto:mdbockma at ucsd.edu>>
> <mailto:mdbockma at ucsd.edu <mailto:mdbockma at ucsd.edu>
> <mailto:mdbockma at ucsd.edu <mailto:mdbockma at ucsd.edu>>>>
> <mailto:mdbockma at ucsd.edu <mailto:mdbockma at ucsd.edu>
> <mailto:mdbockma at ucsd.edu <mailto:mdbockma at ucsd.edu>>
> <mailto:mdbockma at ucsd.edu <mailto:mdbockma at ucsd.edu>
> <mailto:mdbockma at ucsd.edu <mailto:mdbockma at ucsd.edu>>>
> <mailto:mdbockma at ucsd.edu <mailto:mdbockma at ucsd.edu>
> <mailto:mdbockma at ucsd.edu <mailto:mdbockma at ucsd.edu>>
> <mailto:mdbockma at ucsd.edu <mailto:mdbockma at ucsd.edu>
> <mailto:mdbockma at ucsd.edu <mailto:mdbockma at ucsd.edu>>>>>>__>
> wrote:
>
> I added the include directories from "make
> getincludedirs" and I
> added the line from "make getlinklib". Eclipse
> creates a gcc
> call as follows:
>
>
> /home/mdbockman/Documents/__________Research/codes/petsc/__petsc-__3.______1-p8/linux-__gnu-c-__debug/bin/______mpicc
>
> -I/home/mdbockman/Documents/__________Research/codes/petsc/____petsc-__3.____1-p8/linux-gnu-____c-debug/____include
>
> -I/home/mdbockman/Documents/__________Research/codes/petsc/____petsc-__3.____1-p8/include
>
> -I/home/mdbockman/Documents/__________Research/codes/petsc/____petsc-__3.____1-p8/linux-gnu-____c-debug/____include
> -O0 -g3 -pg -p -Wall
>
> -Wl,-rpath,/home/mdbockman/__________Documents/Research/codes/__________petsc/petsc-3.1-p8/__linux-__gnu-______c-debug/lib
>
> -Wl,-rpath,/home/mdbockman/__________Documents/Research/codes/__________petsc/petsc-3.1-p8/__linux-__gnu-______c-debug/lib
>
> -L/home/mdbockman/Documents/__________Research/codes/petsc/____petsc-__3.____1-p8/linux-gnu-____c-debug/__lib
> -lpetsc -lX11
>
> -Wl,-rpath,/home/mdbockman/__________Documents/Research/codes/__________petsc/petsc-3.1-p8/__linux-__gnu-______c-debug/lib
>
> -L/home/mdbockman/Documents/__________Research/codes/petsc/____petsc-__3.____1-p8/linux-gnu-____c-debug/__lib
> -lflapack -lfblas -lnsl -lrt -lm
>
> -L/home/mdbockman/Documents/__________Research/codes/petsc/____petsc-__3.____1-p8/linux-gnu-____c-debug/__lib
>
> -L/usr/lib/x86_64-linux-gnu/__________gcc/x86_64-linux-gnu/4.__5.2
> -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lpthread
> -lrt -lgcc_s
> -lmpichf90 -lgfortran -lm -lm -ldl -lmpich -lpthread -lrt
> -lgcc_s -ldl -MMD -MP -MF"SparseMatrixPetsc.d"
> -MT"SparseMatrixPetsc.d" -o"SparseMatrixPetsc.o"
> "../SparseMatrixPetsc.c
>
> And when it is compiled I get the following:
>
> http://pastebin.com/CbRzYcZj
>
> The source file which is being compiled is:
>
> http://pastebin.com/Q85hXvnS
>
> Please have a look. I'm not quite sure what I'm doing
> wrong but
> I feel like I'm getting closer and closer to the
> solution.
>
> Matt
>
>
> On Wed, Jul 27, 2011 at 11:52 AM, Satish Balay
> <balay at mcs.anl.gov <mailto:balay at mcs.anl.gov>
> <mailto:balay at mcs.anl.gov <mailto:balay at mcs.anl.gov>>
> <mailto:balay at mcs.anl.gov <mailto:balay at mcs.anl.gov>
> <mailto:balay at mcs.anl.gov <mailto:balay at mcs.anl.gov>>>
> <mailto:balay at mcs.anl.gov <mailto:balay at mcs.anl.gov>
> <mailto:balay at mcs.anl.gov <mailto:balay at mcs.anl.gov>>
> <mailto:balay at mcs.anl.gov <mailto:balay at mcs.anl.gov>
> <mailto:balay at mcs.anl.gov <mailto:balay at mcs.anl.gov>>>>
> <mailto:balay at mcs.anl.gov <mailto:balay at mcs.anl.gov>
> <mailto:balay at mcs.anl.gov <mailto:balay at mcs.anl.gov>>
> <mailto:balay at mcs.anl.gov <mailto:balay at mcs.anl.gov>
> <mailto:balay at mcs.anl.gov <mailto:balay at mcs.anl.gov>>>
> <mailto:balay at mcs.anl.gov <mailto:balay at mcs.anl.gov>
> <mailto:balay at mcs.anl.gov <mailto:balay at mcs.anl.gov>>
> <mailto:balay at mcs.anl.gov <mailto:balay at mcs.anl.gov>
> <mailto:balay at mcs.anl.gov <mailto:balay at mcs.anl.gov>>>>>
> <mailto:balay at mcs.anl.gov <mailto:balay at mcs.anl.gov>
> <mailto:balay at mcs.anl.gov <mailto:balay at mcs.anl.gov>>
> <mailto:balay at mcs.anl.gov <mailto:balay at mcs.anl.gov>
> <mailto:balay at mcs.anl.gov <mailto:balay at mcs.anl.gov>>>
> <mailto:balay at mcs.anl.gov <mailto:balay at mcs.anl.gov>
> <mailto:balay at mcs.anl.gov <mailto:balay at mcs.anl.gov>>
> <mailto:balay at mcs.anl.gov <mailto:balay at mcs.anl.gov>
> <mailto:balay at mcs.anl.gov <mailto:balay at mcs.anl.gov>>>>
> <mailto:balay at mcs.anl.gov <mailto:balay at mcs.anl.gov>
> <mailto:balay at mcs.anl.gov <mailto:balay at mcs.anl.gov>>
> <mailto:balay at mcs.anl.gov <mailto:balay at mcs.anl.gov>
> <mailto:balay at mcs.anl.gov <mailto:balay at mcs.anl.gov>>>
> <mailto:balay at mcs.anl.gov <mailto:balay at mcs.anl.gov>
> <mailto:balay at mcs.anl.gov <mailto:balay at mcs.anl.gov>>
> <mailto:balay at mcs.anl.gov <mailto:balay at mcs.anl.gov>
> <mailto:balay at mcs.anl.gov <mailto:balay at mcs.anl.gov>>>>>>__>
> wrote:
>
> use:
> make getincludedirs
>
> Satish
>
> On Wed, 27 Jul 2011, Mohammad Mirzadeh wrote:
>
> > I applogize for the mistake; Include files are
> actually
> located
> > in $PETSC_DIR/include
> >
> > On Wed, Jul 27, 2011 at 11:18 AM, Mohammad Mirzadeh
> <mirzadeh at gmail.com <mailto:mirzadeh at gmail.com>
> <mailto:mirzadeh at gmail.com <mailto:mirzadeh at gmail.com>>
> <mailto:mirzadeh at gmail.com
> <mailto:mirzadeh at gmail.com> <mailto:mirzadeh at gmail.com
> <mailto:mirzadeh at gmail.com>>>
> <mailto:mirzadeh at gmail.com
> <mailto:mirzadeh at gmail.com> <mailto:mirzadeh at gmail.com
> <mailto:mirzadeh at gmail.com>>
> <mailto:mirzadeh at gmail.com
> <mailto:mirzadeh at gmail.com> <mailto:mirzadeh at gmail.com
> <mailto:mirzadeh at gmail.com>>>>
> <mailto:mirzadeh at gmail.com
> <mailto:mirzadeh at gmail.com> <mailto:mirzadeh at gmail.com
> <mailto:mirzadeh at gmail.com>>
> <mailto:mirzadeh at gmail.com
> <mailto:mirzadeh at gmail.com> <mailto:mirzadeh at gmail.com
> <mailto:mirzadeh at gmail.com>>>
> <mailto:mirzadeh at gmail.com
> <mailto:mirzadeh at gmail.com> <mailto:mirzadeh at gmail.com
> <mailto:mirzadeh at gmail.com>>
> <mailto:mirzadeh at gmail.com
> <mailto:mirzadeh at gmail.com> <mailto:mirzadeh at gmail.com
> <mailto:mirzadeh at gmail.com>>>>>
> <mailto:mirzadeh at gmail.com
> <mailto:mirzadeh at gmail.com> <mailto:mirzadeh at gmail.com
> <mailto:mirzadeh at gmail.com>>
> <mailto:mirzadeh at gmail.com
> <mailto:mirzadeh at gmail.com> <mailto:mirzadeh at gmail.com
> <mailto:mirzadeh at gmail.com>>>
> <mailto:mirzadeh at gmail.com
> <mailto:mirzadeh at gmail.com> <mailto:mirzadeh at gmail.com
> <mailto:mirzadeh at gmail.com>>
> <mailto:mirzadeh at gmail.com
> <mailto:mirzadeh at gmail.com> <mailto:mirzadeh at gmail.com
> <mailto:mirzadeh at gmail.com>>>>
> <mailto:mirzadeh at gmail.com
> <mailto:mirzadeh at gmail.com> <mailto:mirzadeh at gmail.com
> <mailto:mirzadeh at gmail.com>>
> <mailto:mirzadeh at gmail.com
> <mailto:mirzadeh at gmail.com> <mailto:mirzadeh at gmail.com
> <mailto:mirzadeh at gmail.com>>>
> <mailto:mirzadeh at gmail.com
> <mailto:mirzadeh at gmail.com> <mailto:mirzadeh at gmail.com
> <mailto:mirzadeh at gmail.com>>
> <mailto:mirzadeh at gmail.com <mailto:mirzadeh at gmail.com>
> <mailto:mirzadeh at gmail.com
> <mailto:mirzadeh at gmail.com>>>>>__>__>______wrote:
>
>
> >
> > > Ok then. Now I don't have enough experience with
> Eclipse so
> > > I apologize beforehand if you already know
> these/have
> tried them out. If
> > > not, hopefully they can be of help. I assume there
> should be a way in
> > > Eclipse to give it the link lib directory. In plain
> makefile that's just a
> > > simple step when linking. To get all the needed
> linklibs for petsc, you can
> > > do
> > >
> > > make getlinklibs
> > >
> > > in the $PETSC_DIR. As for the needed include files,
> they are all located
> > > in
> > >
> > > $PETSC_DIR/$PETSC_ARCH/include
> > >
> > > Again, its easy to use these directories along with
> your makefile. I'm not
> > > sure about how you give them to Eclipse though.
> Hopefully this has been
> > > helpful.
> > >
> > > Best,
> > > Mohammad
> > >
> > >
> > >
> > >
> > > On Wed, Jul 27, 2011 at 10:52 AM, Matt Bockman
> <mdbockma at ucsd.edu <mailto:mdbockma at ucsd.edu>
> <mailto:mdbockma at ucsd.edu <mailto:mdbockma at ucsd.edu>>
> <mailto:mdbockma at ucsd.edu <mailto:mdbockma at ucsd.edu>
> <mailto:mdbockma at ucsd.edu <mailto:mdbockma at ucsd.edu>>>
> <mailto:mdbockma at ucsd.edu <mailto:mdbockma at ucsd.edu>
> <mailto:mdbockma at ucsd.edu <mailto:mdbockma at ucsd.edu>>
> <mailto:mdbockma at ucsd.edu <mailto:mdbockma at ucsd.edu>
> <mailto:mdbockma at ucsd.edu <mailto:mdbockma at ucsd.edu>>>>
> <mailto:mdbockma at ucsd.edu <mailto:mdbockma at ucsd.edu>
> <mailto:mdbockma at ucsd.edu <mailto:mdbockma at ucsd.edu>>
> <mailto:mdbockma at ucsd.edu <mailto:mdbockma at ucsd.edu>
> <mailto:mdbockma at ucsd.edu <mailto:mdbockma at ucsd.edu>>>
> <mailto:mdbockma at ucsd.edu <mailto:mdbockma at ucsd.edu>
> <mailto:mdbockma at ucsd.edu <mailto:mdbockma at ucsd.edu>>
> <mailto:mdbockma at ucsd.edu <mailto:mdbockma at ucsd.edu>
> <mailto:mdbockma at ucsd.edu <mailto:mdbockma at ucsd.edu>>>>>
> <mailto:mdbockma at ucsd.edu <mailto:mdbockma at ucsd.edu>
> <mailto:mdbockma at ucsd.edu <mailto:mdbockma at ucsd.edu>>
> <mailto:mdbockma at ucsd.edu <mailto:mdbockma at ucsd.edu>
> <mailto:mdbockma at ucsd.edu <mailto:mdbockma at ucsd.edu>>>
> <mailto:mdbockma at ucsd.edu <mailto:mdbockma at ucsd.edu>
> <mailto:mdbockma at ucsd.edu <mailto:mdbockma at ucsd.edu>>
> <mailto:mdbockma at ucsd.edu <mailto:mdbockma at ucsd.edu>
> <mailto:mdbockma at ucsd.edu <mailto:mdbockma at ucsd.edu>>>>
> <mailto:mdbockma at ucsd.edu <mailto:mdbockma at ucsd.edu>
> <mailto:mdbockma at ucsd.edu <mailto:mdbockma at ucsd.edu>>
> <mailto:mdbockma at ucsd.edu <mailto:mdbockma at ucsd.edu>
> <mailto:mdbockma at ucsd.edu <mailto:mdbockma at ucsd.edu>>>
> <mailto:mdbockma at ucsd.edu <mailto:mdbockma at ucsd.edu>
> <mailto:mdbockma at ucsd.edu <mailto:mdbockma at ucsd.edu>>
> <mailto:mdbockma at ucsd.edu <mailto:mdbockma at ucsd.edu>
> <mailto:mdbockma at ucsd.edu <mailto:mdbockma at ucsd.edu>>>>>>__>
> wrote:
> > >
> > >> Just pointing it to the library would be
> sufficient.
> > >>
> > >> Matt
> > >>
> > >>
> > >> On Wed, Jul 27, 2011 at 10:21 AM, Mohammad Mirzadeh
> <mirzadeh at gmail.com <mailto:mirzadeh at gmail.com>
> <mailto:mirzadeh at gmail.com <mailto:mirzadeh at gmail.com>>
> <mailto:mirzadeh at gmail.com
> <mailto:mirzadeh at gmail.com> <mailto:mirzadeh at gmail.com
> <mailto:mirzadeh at gmail.com>>>
> <mailto:mirzadeh at gmail.com
> <mailto:mirzadeh at gmail.com> <mailto:mirzadeh at gmail.com
> <mailto:mirzadeh at gmail.com>>
> <mailto:mirzadeh at gmail.com
> <mailto:mirzadeh at gmail.com> <mailto:mirzadeh at gmail.com
> <mailto:mirzadeh at gmail.com>>>>
> <mailto:mirzadeh at gmail.com
> <mailto:mirzadeh at gmail.com> <mailto:mirzadeh at gmail.com
> <mailto:mirzadeh at gmail.com>>
> <mailto:mirzadeh at gmail.com
> <mailto:mirzadeh at gmail.com> <mailto:mirzadeh at gmail.com
> <mailto:mirzadeh at gmail.com>>>
> <mailto:mirzadeh at gmail.com
> <mailto:mirzadeh at gmail.com> <mailto:mirzadeh at gmail.com
> <mailto:mirzadeh at gmail.com>>
> <mailto:mirzadeh at gmail.com
> <mailto:mirzadeh at gmail.com> <mailto:mirzadeh at gmail.com
> <mailto:mirzadeh at gmail.com>>>>>
> <mailto:mirzadeh at gmail.com
> <mailto:mirzadeh at gmail.com> <mailto:mirzadeh at gmail.com
> <mailto:mirzadeh at gmail.com>>
> <mailto:mirzadeh at gmail.com
> <mailto:mirzadeh at gmail.com> <mailto:mirzadeh at gmail.com
> <mailto:mirzadeh at gmail.com>>>
> <mailto:mirzadeh at gmail.com
> <mailto:mirzadeh at gmail.com> <mailto:mirzadeh at gmail.com
> <mailto:mirzadeh at gmail.com>>
> <mailto:mirzadeh at gmail.com
> <mailto:mirzadeh at gmail.com> <mailto:mirzadeh at gmail.com
> <mailto:mirzadeh at gmail.com>>>>
> <mailto:mirzadeh at gmail.com
> <mailto:mirzadeh at gmail.com> <mailto:mirzadeh at gmail.com
> <mailto:mirzadeh at gmail.com>>
> <mailto:mirzadeh at gmail.com
> <mailto:mirzadeh at gmail.com> <mailto:mirzadeh at gmail.com
> <mailto:mirzadeh at gmail.com>>>
> <mailto:mirzadeh at gmail.com
> <mailto:mirzadeh at gmail.com> <mailto:mirzadeh at gmail.com
> <mailto:mirzadeh at gmail.com>>
> <mailto:mirzadeh at gmail.com <mailto:mirzadeh at gmail.com>
> <mailto:mirzadeh at gmail.com
> <mailto:mirzadeh at gmail.com>>>>>__>__>______wrote:
>
>
> > >>
> > >>> So do you want to be able to compile PETSc with
> Eclipse or just point it
> > >>> to the library to use in your own applications?
> > >>>
> > >>>
> > >>> On Wed, Jul 27, 2011 at 9:14 AM, Matt Bockman
> <mdbockma at ucsd.edu <mailto:mdbockma at ucsd.edu>
> <mailto:mdbockma at ucsd.edu <mailto:mdbockma at ucsd.edu>>
> <mailto:mdbockma at ucsd.edu <mailto:mdbockma at ucsd.edu>
> <mailto:mdbockma at ucsd.edu <mailto:mdbockma at ucsd.edu>>>
> <mailto:mdbockma at ucsd.edu <mailto:mdbockma at ucsd.edu>
> <mailto:mdbockma at ucsd.edu <mailto:mdbockma at ucsd.edu>>
> <mailto:mdbockma at ucsd.edu <mailto:mdbockma at ucsd.edu>
> <mailto:mdbockma at ucsd.edu <mailto:mdbockma at ucsd.edu>>>>
> <mailto:mdbockma at ucsd.edu <mailto:mdbockma at ucsd.edu>
> <mailto:mdbockma at ucsd.edu <mailto:mdbockma at ucsd.edu>>
> <mailto:mdbockma at ucsd.edu <mailto:mdbockma at ucsd.edu>
> <mailto:mdbockma at ucsd.edu <mailto:mdbockma at ucsd.edu>>>
> <mailto:mdbockma at ucsd.edu <mailto:mdbockma at ucsd.edu>
> <mailto:mdbockma at ucsd.edu <mailto:mdbockma at ucsd.edu>>
> <mailto:mdbockma at ucsd.edu <mailto:mdbockma at ucsd.edu>
> <mailto:mdbockma at ucsd.edu <mailto:mdbockma at ucsd.edu>>>>>
> <mailto:mdbockma at ucsd.edu <mailto:mdbockma at ucsd.edu>
> <mailto:mdbockma at ucsd.edu <mailto:mdbockma at ucsd.edu>>
> <mailto:mdbockma at ucsd.edu <mailto:mdbockma at ucsd.edu>
> <mailto:mdbockma at ucsd.edu <mailto:mdbockma at ucsd.edu>>>
> <mailto:mdbockma at ucsd.edu <mailto:mdbockma at ucsd.edu>
> <mailto:mdbockma at ucsd.edu <mailto:mdbockma at ucsd.edu>>
> <mailto:mdbockma at ucsd.edu <mailto:mdbockma at ucsd.edu>
> <mailto:mdbockma at ucsd.edu <mailto:mdbockma at ucsd.edu>>>>
> <mailto:mdbockma at ucsd.edu <mailto:mdbockma at ucsd.edu>
> <mailto:mdbockma at ucsd.edu <mailto:mdbockma at ucsd.edu>>
> <mailto:mdbockma at ucsd.edu <mailto:mdbockma at ucsd.edu>
> <mailto:mdbockma at ucsd.edu <mailto:mdbockma at ucsd.edu>>>
> <mailto:mdbockma at ucsd.edu <mailto:mdbockma at ucsd.edu>
> <mailto:mdbockma at ucsd.edu <mailto:mdbockma at ucsd.edu>>
> <mailto:mdbockma at ucsd.edu <mailto:mdbockma at ucsd.edu>
> <mailto:mdbockma at ucsd.edu <mailto:mdbockma at ucsd.edu>>>>>>__>
> wrote:
> > >>>
> > >>>> Thanks Mohammad,
> > >>>>
> > >>>> I'll give that a shot. I use Qt Creator for
> some GUI
> applications so I
> > >>>> am familiar with it, but I've never tried doing a
> non-Qt project in it. I'd
> > >>>> really like to get Eclipse to work.
> > >>>>
> > >>>> Regarding the makefiles for eclipse. There are
> makefiles that it
> > >>>> generates (which are for GNU make) but I
> think I can
> also manually create my
> > >>>> makefiles. After sleeping on it, it seems
> like this
> might be the best
> > >>>> option, unless I can figure out a way to
> configure
> eclipse to include the
> > >>>> conf/variables and conf/rules files in the
> makefile.
> > >>>>
> > >>>> Matt
> > >>>>
> > >>>>
> > >>>> On Wed, Jul 27, 2011 at 12:01 AM, Mohammad
> Mirzadeh
> <mirzadeh at gmail.com <mailto:mirzadeh at gmail.com>
> <mailto:mirzadeh at gmail.com <mailto:mirzadeh at gmail.com>>
> <mailto:mirzadeh at gmail.com
> <mailto:mirzadeh at gmail.com> <mailto:mirzadeh at gmail.com
> <mailto:mirzadeh at gmail.com>>>
> <mailto:mirzadeh at gmail.com
> <mailto:mirzadeh at gmail.com> <mailto:mirzadeh at gmail.com
> <mailto:mirzadeh at gmail.com>>
> <mailto:mirzadeh at gmail.com
> <mailto:mirzadeh at gmail.com> <mailto:mirzadeh at gmail.com
> <mailto:mirzadeh at gmail.com>>>>
> <mailto:mirzadeh at gmail.com
> <mailto:mirzadeh at gmail.com> <mailto:mirzadeh at gmail.com
> <mailto:mirzadeh at gmail.com>>
> <mailto:mirzadeh at gmail.com
> <mailto:mirzadeh at gmail.com> <mailto:mirzadeh at gmail.com
> <mailto:mirzadeh at gmail.com>>>
> <mailto:mirzadeh at gmail.com
> <mailto:mirzadeh at gmail.com> <mailto:mirzadeh at gmail.com
> <mailto:mirzadeh at gmail.com>>
> <mailto:mirzadeh at gmail.com
> <mailto:mirzadeh at gmail.com> <mailto:mirzadeh at gmail.com
> <mailto:mirzadeh at gmail.com>>>>>
> <mailto:mirzadeh at gmail.com
> <mailto:mirzadeh at gmail.com> <mailto:mirzadeh at gmail.com
> <mailto:mirzadeh at gmail.com>>
> <mailto:mirzadeh at gmail.com
> <mailto:mirzadeh at gmail.com> <mailto:mirzadeh at gmail.com
> <mailto:mirzadeh at gmail.com>>>
> <mailto:mirzadeh at gmail.com
> <mailto:mirzadeh at gmail.com> <mailto:mirzadeh at gmail.com
> <mailto:mirzadeh at gmail.com>>
> <mailto:mirzadeh at gmail.com
> <mailto:mirzadeh at gmail.com> <mailto:mirzadeh at gmail.com
> <mailto:mirzadeh at gmail.com>>>>
> <mailto:mirzadeh at gmail.com
> <mailto:mirzadeh at gmail.com> <mailto:mirzadeh at gmail.com
> <mailto:mirzadeh at gmail.com>>
> <mailto:mirzadeh at gmail.com
> <mailto:mirzadeh at gmail.com> <mailto:mirzadeh at gmail.com
> <mailto:mirzadeh at gmail.com>>>
> <mailto:mirzadeh at gmail.com
> <mailto:mirzadeh at gmail.com> <mailto:mirzadeh at gmail.com
> <mailto:mirzadeh at gmail.com>>
> <mailto:mirzadeh at gmail.com
> <mailto:mirzadeh at gmail.com> <mailto:mirzadeh at gmail.com
> <mailto:mirzadeh at gmail.com>>>>>__>
>
>
> > >>>> > wrote:
> > >>>>
> > >>>>> Although this is sort of orthogonal to what
> you do
> right now,
> > >>>>> I recommend Qt Creator as an alternative IDE to
> Eclipse. It links nicely
> > >>>>> with PETSc(or any other library for that matter)
> and has excellent c/c++
> > >>>>> support.
> > >>>>>
> > >>>>> Mohammad
> > >>>>>
> > >>>>>
> > >>>>> On Tue, Jul 26, 2011 at 7:22 PM, Barry Smith
> <bsmith at mcs.anl.gov <mailto:bsmith at mcs.anl.gov>
> <mailto:bsmith at mcs.anl.gov <mailto:bsmith at mcs.anl.gov>>
> <mailto:bsmith at mcs.anl.gov
> <mailto:bsmith at mcs.anl.gov> <mailto:bsmith at mcs.anl.gov
> <mailto:bsmith at mcs.anl.gov>>>
> <mailto:bsmith at mcs.anl.gov
> <mailto:bsmith at mcs.anl.gov> <mailto:bsmith at mcs.anl.gov
> <mailto:bsmith at mcs.anl.gov>>
> <mailto:bsmith at mcs.anl.gov
> <mailto:bsmith at mcs.anl.gov> <mailto:bsmith at mcs.anl.gov
> <mailto:bsmith at mcs.anl.gov>>>>
> <mailto:bsmith at mcs.anl.gov
> <mailto:bsmith at mcs.anl.gov> <mailto:bsmith at mcs.anl.gov
> <mailto:bsmith at mcs.anl.gov>>
> <mailto:bsmith at mcs.anl.gov
> <mailto:bsmith at mcs.anl.gov> <mailto:bsmith at mcs.anl.gov
> <mailto:bsmith at mcs.anl.gov>>>
> <mailto:bsmith at mcs.anl.gov
> <mailto:bsmith at mcs.anl.gov> <mailto:bsmith at mcs.anl.gov
> <mailto:bsmith at mcs.anl.gov>>
> <mailto:bsmith at mcs.anl.gov
> <mailto:bsmith at mcs.anl.gov> <mailto:bsmith at mcs.anl.gov
> <mailto:bsmith at mcs.anl.gov>>>>>
> <mailto:bsmith at mcs.anl.gov
> <mailto:bsmith at mcs.anl.gov> <mailto:bsmith at mcs.anl.gov
> <mailto:bsmith at mcs.anl.gov>>
> <mailto:bsmith at mcs.anl.gov
> <mailto:bsmith at mcs.anl.gov> <mailto:bsmith at mcs.anl.gov
> <mailto:bsmith at mcs.anl.gov>>>
> <mailto:bsmith at mcs.anl.gov
> <mailto:bsmith at mcs.anl.gov> <mailto:bsmith at mcs.anl.gov
> <mailto:bsmith at mcs.anl.gov>>
> <mailto:bsmith at mcs.anl.gov
> <mailto:bsmith at mcs.anl.gov> <mailto:bsmith at mcs.anl.gov
> <mailto:bsmith at mcs.anl.gov>>>>
> <mailto:bsmith at mcs.anl.gov
> <mailto:bsmith at mcs.anl.gov> <mailto:bsmith at mcs.anl.gov
> <mailto:bsmith at mcs.anl.gov>>
> <mailto:bsmith at mcs.anl.gov
> <mailto:bsmith at mcs.anl.gov> <mailto:bsmith at mcs.anl.gov
> <mailto:bsmith at mcs.anl.gov>>>
> <mailto:bsmith at mcs.anl.gov
> <mailto:bsmith at mcs.anl.gov> <mailto:bsmith at mcs.anl.gov
> <mailto:bsmith at mcs.anl.gov>>
> <mailto:bsmith at mcs.anl.gov <mailto:bsmith at mcs.anl.gov>
> <mailto:bsmith at mcs.anl.gov
> <mailto:bsmith at mcs.anl.gov>>>>>__>__>______wrote:
>
>
> > >>>>>
> > >>>>>>
> > >>>>>> There is a tiny bit of information in the PETSc
> users manual about
> > >>>>>> Eclipse:
> > >>>>>>
> > >>>>>> \section{Eclipse Users} \sindex{eclipse}
> > >>>>>>
> > >>>>>> If you are interested in developing code
> that uses
> PETSc from Eclipse
> > >>>>>> or developing PETSc in Eclipse and have
> knowledge
> of how to do indexing and
> > >>>>>> build libraries in Eclipse please contact
> us at \
> > >>>>>> trl{petsc-dev at mcs.anl.gov
> <mailto:trl%7Bpetsc-dev at mcs.anl.gov>
> <mailto:trl%7Bpetsc-dev at mcs.__anl.gov
> <mailto:trl%257Bpetsc-dev at mcs.anl.gov>>
> <mailto:trl%7Bpetsc-dev at mcs.
> <mailto:trl%257Bpetsc-dev at mcs.>____anl.gov <http://anl.gov>
> <mailto:trl%257Bpetsc-dev at mcs.__anl.gov
> <mailto:trl%25257Bpetsc-dev at mcs.anl.gov>>>
> <mailto:trl%7Bpetsc-dev at mcs
> <mailto:trl%257Bpetsc-dev at mcs>.
> <mailto:trl%257Bpetsc-dev at mcs
> <mailto:trl%25257Bpetsc-dev at mcs>.__>____anl.gov
> <http://anl.gov> <http://anl.gov>
> <mailto:trl%257Bpetsc-dev at mcs.
> <mailto:trl%25257Bpetsc-dev at mcs.>____anl.gov <http://anl.gov>
> <mailto:trl%25257Bpetsc-dev at __mcs.anl.gov
> <mailto:trl%2525257Bpetsc-dev at mcs.anl.gov>>>>
> <mailto:trl%7Bpetsc-dev at mcs
> <mailto:trl%257Bpetsc-dev at mcs> <mailto:trl%257Bpetsc-dev at mcs
> <mailto:trl%25257Bpetsc-dev at mcs>>__.
> <mailto:trl%257Bpetsc-dev at mcs
> <mailto:trl%25257Bpetsc-dev at mcs>
> <mailto:trl%25257Bpetsc-dev at __mcs
> <mailto:trl%2525257Bpetsc-dev at mcs>>.__>____anl.gov
> <http://anl.gov> <http://anl.gov>
> <http://anl.gov>
> <mailto:trl%257Bpetsc-dev at mcs
> <mailto:trl%25257Bpetsc-dev at mcs>.
> <mailto:trl%25257Bpetsc-dev at __mcs
> <mailto:trl%2525257Bpetsc-dev at mcs>.>____anl.gov
> <http://anl.gov> <http://anl.gov>
> <mailto:trl%25257Bpetsc-dev@
> <mailto:trl%2525257Bpetsc-dev@>____mcs.anl.gov
> <http://mcs.anl.gov>
> <mailto:trl%2525257Bpetsc-dev at __mcs.anl.gov
> <mailto:trl%252525257Bpetsc-dev at mcs.anl.gov>>>>>
> <mailto:trl%7Bpetsc-dev at mcs
> <mailto:trl%257Bpetsc-dev at mcs> <mailto:trl%257Bpetsc-dev at mcs
> <mailto:trl%25257Bpetsc-dev at mcs>>
> <mailto:trl%257Bpetsc-dev at mcs
> <mailto:trl%25257Bpetsc-dev at mcs>
> <mailto:trl%25257Bpetsc-dev at __mcs
> <mailto:trl%2525257Bpetsc-dev at mcs>>>__.
>
> <mailto:trl%257Bpetsc-dev at mcs
> <mailto:trl%25257Bpetsc-dev at mcs>
> <mailto:trl%25257Bpetsc-dev at __mcs
> <mailto:trl%2525257Bpetsc-dev at mcs>>
> <mailto:trl%25257Bpetsc-dev@
> <mailto:trl%2525257Bpetsc-dev@>____mcs
> <mailto:trl%2525257Bpetsc-dev at __mcs
> <mailto:trl%252525257Bpetsc-dev at mcs>>>.__>____anl.gov
> <http://anl.gov>
> <http://anl.gov> <http://anl.gov>
>
> <http://anl.gov>
>
> <mailto:trl%257Bpetsc-dev at mcs
> <mailto:trl%25257Bpetsc-dev at mcs>
> <mailto:trl%25257Bpetsc-dev at __mcs
> <mailto:trl%2525257Bpetsc-dev at mcs>>.
> <mailto:trl%25257Bpetsc-dev@
> <mailto:trl%2525257Bpetsc-dev@>____mcs
> <mailto:trl%2525257Bpetsc-dev at __mcs
> <mailto:trl%252525257Bpetsc-dev at mcs>>.>____anl.gov
> <http://anl.gov> <http://anl.gov>
> <http://anl.gov>
>
> <mailto:trl%25257Bpetsc-dev@
> <mailto:trl%2525257Bpetsc-dev@>
> <mailto:trl%2525257Bpetsc-dev@
> <mailto:trl%252525257Bpetsc-dev@>__>____mcs.anl.gov
> <http://mcs.anl.gov> <http://mcs.anl.gov>
>
> <mailto:trl%2525257Bpetsc-dev@
> <mailto:trl%252525257Bpetsc-dev@>____mcs.anl.gov
> <http://mcs.anl.gov>
> <mailto:trl%252525257Bpetsc-__dev at mcs.anl.gov
> <mailto:trl%25252525257Bpetsc-dev at mcs.anl.gov>>>>>>}.
>
>
>
>
>
> > >>>>>>
> > >>>>>> To make PETSc an Eclipse package
> > >>>>>> \begin{itemize}
> > >>>>>> \item Install the Mecurial plugin for
> Eclipse and
> then import the
> > >>>>>> PETSc repository to Eclipse.
> > >>>>>> \item elected New->Convert to C/C++ project and
> selected shared
> > >>>>>> library. After this point you can perform
> searchs
> in the code.
> > >>>>>> \end{itemize}
> > >>>>>>
> > >>>>>> A PETSc user has provided the following
> steps to
> build an Eclipse
> > >>>>>> index for PETSc that can be used with their own
> code without compiling PETSc
> > >>>>>> source into their project.
> > >>>>>> \begin{itemize}
> > >>>>>> \item In the user project source directory,
> create
> a symlink to the
> > >>>>>> petsc/src directory.
> > >>>>>> \item Refresh the project explorer in
> Eclipse, so
> the new symlink is
> > >>>>>> followed.
> > >>>>>> \item Right-click on the project in the project
> explorer, and choose
> > >>>>>> "Index -> Rebuild". The index should now be
> build.
> > >>>>>> \item Right-click on the PETSc symlink in the
> project explorer, and
> > >>>>>> choose "Exclude from build..." to make sure
> Eclipse does not try to compile
> > >>>>>> PETSc with the project.
> > >>>>>> \end{itemize}
> > >>>>>>
> > >>>>>> We'd love to have someone figure out how to
> do it
> right and include
> > >>>>>> that information.
> > >>>>>>
> > >>>>>> Barry
> > >>>>>>
> > >>>>>> On Jul 26, 2011, at 4:32 PM, Matt Bockman
> wrote:
> > >>>>>>
> > >>>>>> > Has anyone gotten PETSc to work w/Eclipse?
> Eclipse nicely generates
> > >>>>>> all my makefiles for me for my current project
> (which is written in C++).
> > >>>>>> I'd like to link PETSc w/my application but I'm
> not sure how to do this.
> > >>>>>> >
> > >>>>>> > Suggestions?
> > >>>>>> >
> > >>>>>> > Thanks,
> > >>>>>> > Matt
> > >>>>>>
> > >>>>>>
> > >>>>>
> > >>>>
> > >>>
> > >>
> > >
> >
>
>
>
>
>
>
>
>
>
>
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