[petsc-users] sgi mpt errors

[pratik]

Hi Satish,

On Wednesday 06 July 2011 10:40 AM, Satish Balay wrote:
> what do you have for:
>
>
> nm -Ao /opt/sgi/mpt/mpt-1.23/lib/* |grep -i mpi_sgi_status_ignore
>
>    
/opt/sgi/mpt/mpt-1.23/lib/libmpi_mt.so:00000000003865f0 B 
mpi_sgi_status_ignore
/opt/sgi/mpt/mpt-1.23/lib/libmpi.so:00000000003835d0 B mpi_sgi_status_ignore

>> --CFLAGS=-Wno-deprecated
>> -I/opt/sgi/mpt/mpt-1.23/include -L/opt/sgi/mpt/mpt-1.23/lib -lmpi -lsma -O3
>> -xT -g
>> --with-mpi-lib=/opt/sgi/mpt/mpt-1.23/lib/libmpi.so
>>      
> Perhaps you should use:
>
> CFLAGS="-Wno-deprecated -xT" COPTFLAGS="-O3 -g" --with-mpi-lib="-L/opt/sgi/mpt/mpt-1.23/lib -lmpi -lsma"
>
> Satish
>
>    
Unfortunately, I am still getting the same errors. I used nm to search 
for the rest of the missing symbols, all of them seem to be in 
libmpi.so, so i don't understand why the test is still giving these errors.

Thanks once again,
Pratik
> On Wed, 6 Jul 2011, pratik wrote:
>
>    
>> Hi everyone,
>>
>> I am getting the following errors on testing PETSc on an SGI ALTIX cluster
>> with sgi mpt-1.23.:(building and install was without any problems):
>>
>> /opt/intel/Compiler/11.1/038/bin/intel64/icc -o ex19.o -c -Wno-deprecated -g
>> -I/home/pratikm/install/include -I/home/pratikm/install/include
>> -I/usr/X11R6/include -I/usr/include -I/usr/lib64
>> -I/opt/sgi/mpt/mpt-1.23/include -D__INSDIR__=src/snes/examples/tutorials/
>> ex19.c
>> /opt/intel/Compiler/11.1/038/bin/intel64/icc -Wno-deprecated -g  -o ex19
>> ex19.o -Wl,-rpath,/home/pratikm/install/lib -L/home/pratikm/install/lib
>> -lpetsc  -L/usr/X11R6/lib64 -lX11 -Wl,-rpath,/usr/lib64 -L/usr/lib64 -lhdf5
>> -llapack -lblas -Wl,-rpath,/opt/sgi/mpt/mpt-1.23/lib
>> -L/opt/sgi/mpt/mpt-1.23/lib -lmpi -ldl
>> -L/opt/intel/Compiler/11.1/038/lib/intel64
>> -L/usr/lib64/gcc/x86_64-suse-linux/4.1.2 -L/usr/x86_64-suse-linux/lib -limf
>> -lsvml -lipgo -ldecimal -lirc -lgcc_s -lirc_s -lgfortran -lm -lm -ldl -limf
>> -lsvml -lipgo -ldecimal -lirc -lgcc_s -lirc_s -ldl
>> /home/pratikm/install/lib/libpetsc.a(bvec2.o): In function
>> `VecView_Seq_Binary':
>> /home/pratikm/source/PETSc/petsc-3.1-p8/src/vec/vec/impls/seq/bvec2.c:401:
>> undefined reference to `mpi_sgi_status_ignore'
>> /home/pratikm/install/lib/libpetsc.a(pdvec.o): In function
>> `VecView_MPI_Binary':
>> /home/pratikm/source/PETSc/petsc-3.1-p8/src/vec/vec/impls/mpi/pdvec.c:459:
>> undefined reference to `mpi_sgi_status_ignore'
>> /home/pratikm/install/lib/libpetsc.a(gr2.o): In function `DAArrayMPIIO':
>> /home/pratikm/source/PETSc/petsc-3.1-p8/src/dm/da/src/gr2.c:478: undefined
>> reference to `mpi_sgi_status_ignore'
>> /home/pratikm/source/PETSc/petsc-3.1-p8/src/dm/da/src/gr2.c:480: undefined
>> reference to `mpi_sgi_status_ignore'
>> /home/pratikm/install/lib/libpetsc.a(vecio.o): In function `VecLoad_Binary':
>> /home/pratikm/source/PETSc/petsc-3.1-p8/src/vec/vec/utils/vecio.c:275:
>> undefined reference to `mpi_sgi_status_ignore'
>> /home/pratikm/install/lib/libpetsc.a(mpiov.o): In function
>> `MatGetSubMatrix_MPIAIJ_All':
>> /home/pratikm/source/PETSc/petsc-3.1-p8/src/mat/impls/aij/mpi/mpiov.c:585:
>> undefined reference to `mpi_sgi_inplace'
>> /home/pratikm/source/PETSc/petsc-3.1-p8/src/mat/impls/aij/mpi/mpiov.c:646:
>> undefined reference to `mpi_sgi_inplace'
>> /home/pratikm/source/PETSc/petsc-3.1-p8/src/mat/impls/aij/mpi/mpiov.c:720:
>> undefined reference to `mpi_sgi_inplace'
>> /home/pratikm/install/lib/libpetsc.a(mpibaij.o): In function
>> `MatGetSeqNonzerostructure_MPIBAIJ':
>> /home/pratikm/source/PETSc/petsc-3.1-p8/src/mat/impls/baij/mpi/mpibaij.c:2391:
>> undefined reference to `mpi_sgi_inplace'
>> /home/pratikm/source/PETSc/petsc-3.1-p8/src/mat/impls/baij/mpi/mpibaij.c:2450:
>> undefined reference to `mpi_sgi_inplace'
>> make[3]: [ex19] Error 1 (ignored)
>> /bin/rm -f ex19.o
>>
>>
>> Can anyone please tell me what options i need to provide when configuring so
>> that the program works correctly?
>> here is the configure option that i used:
>>
>> ./config/configure.py --prefix=/home/pratikm/install
>> -with-cc=/opt/intel/Compiler/11.1/038/bin/intel64/icc --CFLAGS=-Wno-deprecated
>> -I/opt/sgi/mpt/mpt-1.23/include -L/opt/sgi/mpt/mpt-1.23/lib -lmpi -lsma -O3
>> -xT -g -with-cxx=/opt/intel/Compiler/11.1/038/bin/intel64/icpc
>> --CXXFLAGS=-Wno-deprecated -I/opt/sgi/mpt/mpt-1.23/include
>> -L/opt/sgi/mpt/mpt-1.23/lib -lmpi++ -lmpi -lsma
>> --with-mpi-include=/opt/sgi/mpt/mpt-1.23/include
>> --with-mpi-lib=/opt/sgi/mpt/mpt-1.23/lib/libmpi.so
>> --with-hdf5-include=/usr/include --with-hdf5-lib=/usr/lib64/libhdf5.so
>>
>>
>> Thanks in advance,
>> Pratik
>>
>>      
>