[petsc-users] sgi mpt errors

[Satish Balay]

what do you have for:


nm -Ao /opt/sgi/mpt/mpt-1.23/lib/* |grep -i mpi_sgi_status_ignore

> --CFLAGS=-Wno-deprecated
> -I/opt/sgi/mpt/mpt-1.23/include -L/opt/sgi/mpt/mpt-1.23/lib -lmpi -lsma -O3
> -xT -g
> --with-mpi-lib=/opt/sgi/mpt/mpt-1.23/lib/libmpi.so

Perhaps you should use:

CFLAGS="-Wno-deprecated -xT" COPTFLAGS="-O3 -g" --with-mpi-lib="-L/opt/sgi/mpt/mpt-1.23/lib -lmpi -lsma"

Satish


On Wed, 6 Jul 2011, pratik wrote:

> Hi everyone,
> 
> I am getting the following errors on testing PETSc on an SGI ALTIX cluster
> with sgi mpt-1.23.:(building and install was without any problems):
> 
> /opt/intel/Compiler/11.1/038/bin/intel64/icc -o ex19.o -c -Wno-deprecated -g
> -I/home/pratikm/install/include -I/home/pratikm/install/include
> -I/usr/X11R6/include -I/usr/include -I/usr/lib64
> -I/opt/sgi/mpt/mpt-1.23/include -D__INSDIR__=src/snes/examples/tutorials/
> ex19.c
> /opt/intel/Compiler/11.1/038/bin/intel64/icc -Wno-deprecated -g  -o ex19
> ex19.o -Wl,-rpath,/home/pratikm/install/lib -L/home/pratikm/install/lib
> -lpetsc  -L/usr/X11R6/lib64 -lX11 -Wl,-rpath,/usr/lib64 -L/usr/lib64 -lhdf5
> -llapack -lblas -Wl,-rpath,/opt/sgi/mpt/mpt-1.23/lib
> -L/opt/sgi/mpt/mpt-1.23/lib -lmpi -ldl
> -L/opt/intel/Compiler/11.1/038/lib/intel64
> -L/usr/lib64/gcc/x86_64-suse-linux/4.1.2 -L/usr/x86_64-suse-linux/lib -limf
> -lsvml -lipgo -ldecimal -lirc -lgcc_s -lirc_s -lgfortran -lm -lm -ldl -limf
> -lsvml -lipgo -ldecimal -lirc -lgcc_s -lirc_s -ldl
> /home/pratikm/install/lib/libpetsc.a(bvec2.o): In function
> `VecView_Seq_Binary':
> /home/pratikm/source/PETSc/petsc-3.1-p8/src/vec/vec/impls/seq/bvec2.c:401:
> undefined reference to `mpi_sgi_status_ignore'
> /home/pratikm/install/lib/libpetsc.a(pdvec.o): In function
> `VecView_MPI_Binary':
> /home/pratikm/source/PETSc/petsc-3.1-p8/src/vec/vec/impls/mpi/pdvec.c:459:
> undefined reference to `mpi_sgi_status_ignore'
> /home/pratikm/install/lib/libpetsc.a(gr2.o): In function `DAArrayMPIIO':
> /home/pratikm/source/PETSc/petsc-3.1-p8/src/dm/da/src/gr2.c:478: undefined
> reference to `mpi_sgi_status_ignore'
> /home/pratikm/source/PETSc/petsc-3.1-p8/src/dm/da/src/gr2.c:480: undefined
> reference to `mpi_sgi_status_ignore'
> /home/pratikm/install/lib/libpetsc.a(vecio.o): In function `VecLoad_Binary':
> /home/pratikm/source/PETSc/petsc-3.1-p8/src/vec/vec/utils/vecio.c:275:
> undefined reference to `mpi_sgi_status_ignore'
> /home/pratikm/install/lib/libpetsc.a(mpiov.o): In function
> `MatGetSubMatrix_MPIAIJ_All':
> /home/pratikm/source/PETSc/petsc-3.1-p8/src/mat/impls/aij/mpi/mpiov.c:585:
> undefined reference to `mpi_sgi_inplace'
> /home/pratikm/source/PETSc/petsc-3.1-p8/src/mat/impls/aij/mpi/mpiov.c:646:
> undefined reference to `mpi_sgi_inplace'
> /home/pratikm/source/PETSc/petsc-3.1-p8/src/mat/impls/aij/mpi/mpiov.c:720:
> undefined reference to `mpi_sgi_inplace'
> /home/pratikm/install/lib/libpetsc.a(mpibaij.o): In function
> `MatGetSeqNonzerostructure_MPIBAIJ':
> /home/pratikm/source/PETSc/petsc-3.1-p8/src/mat/impls/baij/mpi/mpibaij.c:2391:
> undefined reference to `mpi_sgi_inplace'
> /home/pratikm/source/PETSc/petsc-3.1-p8/src/mat/impls/baij/mpi/mpibaij.c:2450:
> undefined reference to `mpi_sgi_inplace'
> make[3]: [ex19] Error 1 (ignored)
> /bin/rm -f ex19.o
> 
> 
> Can anyone please tell me what options i need to provide when configuring so
> that the program works correctly?
> here is the configure option that i used:
> 
> ./config/configure.py --prefix=/home/pratikm/install
> -with-cc=/opt/intel/Compiler/11.1/038/bin/intel64/icc --CFLAGS=-Wno-deprecated
> -I/opt/sgi/mpt/mpt-1.23/include -L/opt/sgi/mpt/mpt-1.23/lib -lmpi -lsma -O3
> -xT -g -with-cxx=/opt/intel/Compiler/11.1/038/bin/intel64/icpc
> --CXXFLAGS=-Wno-deprecated -I/opt/sgi/mpt/mpt-1.23/include
> -L/opt/sgi/mpt/mpt-1.23/lib -lmpi++ -lmpi -lsma
> --with-mpi-include=/opt/sgi/mpt/mpt-1.23/include
> --with-mpi-lib=/opt/sgi/mpt/mpt-1.23/lib/libmpi.so
> --with-hdf5-include=/usr/include --with-hdf5-lib=/usr/lib64/libhdf5.so
> 
> 
> Thanks in advance,
> Pratik
>