Hello for compiled problem

Tue Mar 10 12:52:32 CDT 2009

Hello,
I am so sorry for that, but you are right. Thanks for your advice and I will
pay more attention from now on. Thank you very much.
Weidong

On Tue, Mar 10, 2009 at 6:43 PM, Barry Smith <bsmith at mcs.anl.gov> wrote:

>
>    The order that libraries are listed in a makefile IS IMPORTANT.
>
> DDLIBSTATIC := $(ADDLIBSTATIC) $(PETSC_LIBDIR)/libmpiuni.a
> $(PETSC_LIBDIR)/libpetsccontrib.a $(PETSC_LIBDIR)/libpetscksp.a
> $(PETSC_LIBDIR)/libpetscsnes.a $(PETSC_LIBDIR)/libpetscvec.a
> $(PETSC_LIBDIR)/libpetsc.a $(PETSC_LIBDIR)/libpetscdm.a
> $(PETSC_LIBDIR)/libpetscmat.a $(PETSC_LIBDIR)/libpetscts.a
>
> Here you have some crazy, nonsense ordering of the libraries. Whoever made
> this "makefile" doesn't have a clue about unix; you cannot just dump random
> strings of characters into files and expect to develop software! It requires
> some basic understanding of what you are doing.
>
>
>   Barry
>
>
>
> On Mar 10, 2009, at 11:56 AM, Wei-Dong Lian wrote:
>
>  Hello,
>> Following are my makefile for link petsc. Before I configure with option
>> fortrun compiler with gfortran, it generates the shared library, now in my
>> computer with g77, so there is no shared library, I use the static library
>> as below.
>> Thanks for your information.
>> Weidong
>>
>> ****************************************************
>> #FOR PETSC
>> ifdef HAVE_PETSC
>> DEFS := $(DEFS) -DHAVE_PETSC
>> PETSC_DIR=$(DEVROOT)/Solver/petscSeq
>> PETSC_ARCH=$(ARCHOS)
>> PETSC_LIBDIR := $(PETSC_DIR)/$(PETSC_ARCH)/lib
>> INCLUDES := $(INCLUDES) -I$(PETSC_DIR)/include
>> -I$(PETSC_DIR)/include/mpiuni -I$(PETSC_DIR)/include/adic
>> -I$(PETSC_DIR)/$(PETSC_ARCH)/include
>>
>> ADDLIB := $(ADDLIB) -llapack
>> #ADDLIB := $(ADDLIB) -L$(PETSC_LIBDIR) -Wl,-rpath,$(PETSC_LIBDIR)
>> -lpetsccontrib -lpetscksp -lpetscsnes -lpetscvec -lpetsc -lpetscdm
>> -lpetscmat -lpetscts
>> ADDLIBSTATIC := $(ADDLIBSTATIC) $(PETSC_LIBDIR)/libmpiuni.a
>> $(PETSC_LIBDIR)/libpetsccontrib.a $(PETSC_LIBDIR)/libpetscksp.a
>> $(PETSC_LIBDIR)/libpetscsnes.a $(PETSC_LIBDIR)/libpetscvec.a
>> $(PETSC_LIBDIR)/libpetsc.a $(PETSC_LIBDIR)/libpetscdm.a
>> $(PETSC_LIBDIR)/libpetscmat.a $(PETSC_LIBDIR)/libpetscts.a
>>
>> endif
>> #End For PETSC
>>
>> *****************************************************************************************
>> On Tue, Mar 10, 2009 at 5:34 PM, Wei-Dong Lian <weidong.lian at gmail.com>
>> wrote:
>> Hi,
>> I did not use the PETSc makefiles. First I do not know where it located.
>> Second, I have configured my makefile to link my programme, before it
>> worked, that's in another computer, the difference lies in the fact that
>> this time in the lib directory, there were not *.so library, but *.lib
>> library. Maybe I think it is the problem.
>> Thanks.
>> Weidong
>>
>>
>> On Tue, Mar 10, 2009 at 5:07 PM, Matthew Knepley <knepley at gmail.com>
>> wrote:
>> On Tue, Mar 10, 2009 at 10:59 AM, Wei-Dong Lian <weidong.lian at gmail.com>
>> wrote:
>> Hello everyone,
>>
>> I compiled the petsc-3.0.0-p3 with GCC 3.4.3 under linux 64. But the
>> compiler gave me the following information, see result_1.
>> I also ran the "make test" and it worked successfully, but when I linked
>> petsc to compile my programme, it told me that information see results_2.
>> Any suggestion will be appreciated.
>> Thank you in advance.
>>
>> 1) Any report like this should be sent to petsc-maint at mcs.anl.gov because
>> we need configure.log and make*.log.
>>
>> 2) The warning about -PIC comes about because we cannot parse the warning
>> messages from your compiler. We can try to
>>     add this in when we get the log.
>>
>> 3) If 'make test' works and your link does not, then you have constructed
>> your link line incorrectly. Are you using the PETSc makefiles?
>>
>>  Matt
>>
>>
>> Weidong
>>
>> $$$$$$$$$$$$$$$$$$$$$Result_1$$$$$$$$$$$$$$$$$$$$$$$$$$$$$
>> /ftn-custom
>> g++: option « -PIC » non reconnue
>> libfast in:
>> /usr/local/temp/lian/Develop/latest/Solver/petscSeq/src/ts/impls
>> libfast in:
>> /usr/local/temp/lian/Develop/latest/Solver/petscSeq/src/ts/impls/explicit
>> libfast in:
>> /usr/local/temp/lian/Develop/latest/Solver/petscSeq/src/ts/impls/explicit/euler
>> g++: option « -PIC » non reconnue
>> libfast in:
>> /usr/local/temp/lian/Develop/latest/Solver/petscSeq/src/ts/impls/explicit/rk
>> g++: option « -PIC » non reconnue
>> libfast in:
>> /usr/local/temp/lian/Develop/latest/Solver/petscSeq/src/ts/impls/explicit/rk/ftn-auto
>> g++: option « -PIC » non reconnue
>> libfast in:
>> /usr/local/temp/lian/Develop/latest/Solver/petscSeq/src/ts/impls/implicit
>> libfast in:
>> /usr/local/temp/lian/Develop/latest/Solver/petscSeq/src/ts/impls/implicit/beuler
>> g++: option « -PIC » non reconnue
>> libfast in:
>> /usr/local/temp/lian/Develop/latest/Solver/petscSeq/src/ts/impls/implicit/cn
>>
>>
>> #####################################results_2################################
>> /usr/local/temp/lian/Develop/Solver/petscSeq/x86_64_linux/lib/libpetscdm.a(daint.o)(.text+0x2aaf):
>> In function `DAGetWireBasketInterpolation(_p_DA*, _p_Mat*, MatReuse,
>> _p_Mat**)':
>> /usr/local/temp/lian/Develop/latest/Solver/petscSeq/src/dm/da/utils/daint.c:201:
>> undefined reference to `PetscTableCreate(int, _n_PetscTable**)'
>> /usr/local/temp/lian/Develop/Solver/petscSeq/x86_64_linux/lib/libpetscdm.a(daint.o)(.text+0x2b3d):/usr/local/temp/lian/Develop/latest/Solver/petscSeq/src/dm/da/utils/daint.c:203:
>> undefined reference to `PetscTableAddCount(_n_PetscTable*, int)'
>> /usr/local/temp/lian/Develop/Solver/petscSeq/x86_64_linux/lib/libpetscdm.a(daint.o)(.text+0x2ba1):/usr/local/temp/lian/Develop/latest/Solver/petscSeq/src/dm/da/utils/daint.c:205:
>> undefined reference to `PetscTableGetCount(_n_PetscTable*, int*)'
>> /usr/local/temp/lian/Develop/Solver/petscSeq/x86_64_linux/lib/libpetscdm.a(daint.o)(.text+0x2d24):/usr/local/temp/lian/Develop/latest/Solver/petscSeq/src/dm/da/utils/daint.c:209:
>> undefined reference to `PetscTableFind(_n_PetscTable*, int, int*)'
>> /usr/local/temp/lian/Develop/Solver/petscSeq/x86_64_linux/lib/libpetscdm.a(daint.o)(.text+0x2d8d):/usr/local/temp/lian/Develop/latest/Solver/petscSeq/src/dm/da/utils/daint.c:212:
>> undefined reference to `PetscTableDestroy(_n_PetscTable*)'
>> /usr/local/temp/lian/Develop/Solver/petscSeq/x86_64_linux/lib/libpetscdm.a(daint.o)(.text+0x5adf):
>> In function `DAGetFaceInterpolation(_p_DA*, _p_Mat*, MatReuse, _p_Mat**)':
>>
>> #####################################################################################
>>
>>
>> My configuration of petsc:
>> &&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&
>>
>>                            Pushing language C
>>                            Popping language C
>>                            Pushing language Cxx
>>                            Popping language Cxx
>>                            Pushing language FC
>>                            Popping language FC
>> sh: /bin/sh
>> /usr/local/temp/lian/Develop/latest/Solver/OpenSource/petsc-3.0.0-p3/config/BuildSystem/config/packages/config.gue
>> ss
>> Executing: /bin/sh
>> /usr/local/temp/lian/Develop/latest/Solver/OpenSource/petsc-3.0.0-p3/config/BuildSystem/config/packages/con
>> fig.guess
>> sh: x86_64-unknown-linux-gnu
>>
>> sh: /bin/sh
>> /usr/local/temp/lian/Develop/latest/Solver/OpenSource/petsc-3.0.0-p3/config/BuildSystem/config/packages/config.sub
>>  x86_64-unknown-linux-gnu
>>
>> Executing: /bin/sh
>> /usr/local/temp/lian/Develop/latest/Solver/OpenSource/petsc-3.0.0-p3/config/BuildSystem/config/packages/con
>> fig.sub x86_64-unknown-linux-gnu
>>
>> sh: x86_64-unknown-linux-gnu
>>
>>
>>
>> ================================================================================
>>
>> ================================================================================
>> Starting Configure Run at Tue Mar 10 16:23:30 2009
>> Configure Options: --configModules=PETSc.Configure
>> --optionsModule=PETSc.compilerOptions --with-cc=gcc --with-fc=g77 --with-cx
>> x=g++ --with-mpi=0 --with-x=0 --with-clanguage=cxx --with-shared=1
>> --with-dynamic=1
>> Working directory:
>> /usr/local/temp/lian/Develop/latest/Solver/OpenSource/petsc-3.0.0-p3
>> Machine uname:
>> ('Linux', 'frioul', '2.6.9-22.ELsmp', '#1 SMP Sat Oct 8 21:32:36 BST
>> 2005', 'x86_64')
>> Python version:
>> 2.3.4 (#1, Feb 17 2005, 21:01:10)
>> [GCC 3.4.3 20041212 (Red Hat 3.4.3-9.EL4)]
>>
>> ================================================================================
>>        Pushing language C
>>        Popping language C
>>        Pushing language Cxx
>>        Popping language Cxx
>>        Pushing language FC
>>        Popping language FC
>>
>> ================================================================================
>> TEST configureExternalPackagesDir from
>> config.framework(/usr/local/temp/lian/Develop/latest/Solver/OpenSource/petsc-3.0.0-p3/c
>> onfig/BuildSystem/config/framework.py:815)
>> TESTING: configureExternalPackagesDir from
>> config.framework(config/BuildSystem/config/framework.py:815)
>>
>> ================================================================================
>> TEST configureLibrary from
>> PETSc.packages.NetCDF(/usr/local/temp/lian/Develop/latest/Solver/OpenSource/petsc-3.0.0-p3/config/P
>> ETSc/packages/NetCDF.py:10)
>> TESTING: configureLibrary from
>> PETSc.packages.NetCDF(config/PETSc/packages/NetCDF.py:10)
>>  Find a NetCDF installation and check if it can work with PETSc
>>
>> ================================================================================
>> TEST configureLibrary from
>> PETSc.packages.PVODE(/usr/local/temp/lian/Develop/latest/Solver/OpenSource/petsc-3.0.0-p3/config/PE
>> TSc/packages/PVODE.py:10)
>> TESTING: configureLibrary from
>> PETSc.packages.PVODE(config/PETSc/packages/PVODE.py:10)
>>  Find a PVODE installation and check if it can work with PETSc
>>
>> ================================================================================
>> TEST configureDebuggers from
>> PETSc.utilities.debuggers(/usr/local/temp/lian/Develop/latest/Solver/OpenSource/petsc-3.0.0-p3/co
>> nfig/PETSc/utilities/debuggers.py:22)
>> TESTING: configureDebuggers from
>> PETSc.utilities.debuggers(config/PETSc/utilities/debuggers.py:22)
>>  Find a default debugger and determine its arguments
>>
>>
>>
>>
>> --
>> What most experimenters take for granted before they begin their
>> experiments is infinitely more interesting than any results to which their
>> experiments lead.
>> -- Norbert Wiener
>>
>>
>>
>
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