Hello for compiled problem

Tue Mar 10 12:43:57 CDT 2009

     The order that libraries are listed in a makefile IS IMPORTANT.

DDLIBSTATIC := $(ADDLIBSTATIC) $(PETSC_LIBDIR)/libmpiuni.a $ 
(PETSC_LIBDIR)/libpetsccontrib.a $(PETSC_LIBDIR)/libpetscksp.a $ 
(PETSC_LIBDIR)/libpetscsnes.a $(PETSC_LIBDIR)/libpetscvec.a $ 
(PETSC_LIBDIR)/libpetsc.a $(PETSC_LIBDIR)/libpetscdm.a $(PETSC_LIBDIR)/ 
libpetscmat.a $(PETSC_LIBDIR)/libpetscts.a

Here you have some crazy, nonsense ordering of the libraries. Whoever  
made this "makefile" doesn't have a clue about unix; you cannot just  
dump random strings of characters into files and expect to develop  
software! It requires some basic understanding of what you are doing.

    Barry

On Mar 10, 2009, at 11:56 AM, Wei-Dong Lian wrote:

> Hello,
> Following are my makefile for link petsc. Before I configure with  
> option fortrun compiler with gfortran, it generates the shared  
> library, now in my computer with g77, so there is no shared library,  
> I use the static library as below.
> Thanks for your information.
> Weidong
>
> ****************************************************
> #FOR PETSC
> ifdef HAVE_PETSC
> DEFS := $(DEFS) -DHAVE_PETSC
> PETSC_DIR=$(DEVROOT)/Solver/petscSeq
> PETSC_ARCH=$(ARCHOS)
> PETSC_LIBDIR := $(PETSC_DIR)/$(PETSC_ARCH)/lib
> INCLUDES := $(INCLUDES) -I$(PETSC_DIR)/include -I$(PETSC_DIR)/ 
> include/mpiuni -I$(PETSC_DIR)/include/adic -I$(PETSC_DIR)/$ 
> (PETSC_ARCH)/include
>
> ADDLIB := $(ADDLIB) -llapack
> #ADDLIB := $(ADDLIB) -L$(PETSC_LIBDIR) -Wl,-rpath,$(PETSC_LIBDIR) - 
> lpetsccontrib -lpetscksp -lpetscsnes -lpetscvec -lpetsc -lpetscdm - 
> lpetscmat -lpetscts
> ADDLIBSTATIC := $(ADDLIBSTATIC) $(PETSC_LIBDIR)/libmpiuni.a $ 
> (PETSC_LIBDIR)/libpetsccontrib.a $(PETSC_LIBDIR)/libpetscksp.a $ 
> (PETSC_LIBDIR)/libpetscsnes.a $(PETSC_LIBDIR)/libpetscvec.a $ 
> (PETSC_LIBDIR)/libpetsc.a $(PETSC_LIBDIR)/libpetscdm.a $ 
> (PETSC_LIBDIR)/libpetscmat.a $(PETSC_LIBDIR)/libpetscts.a
>
> endif
> #End For PETSC
> *****************************************************************************************
> On Tue, Mar 10, 2009 at 5:34 PM, Wei-Dong Lian  
> <weidong.lian at gmail.com> wrote:
> Hi,
> I did not use the PETSc makefiles. First I do not know where it  
> located. Second, I have configured my makefile to link my programme,  
> before it worked, that's in another computer, the difference lies in  
> the fact that this time in the lib directory, there were not *.so  
> library, but *.lib library. Maybe I think it is the problem.
> Thanks.
> Weidong
>
>
> On Tue, Mar 10, 2009 at 5:07 PM, Matthew Knepley <knepley at gmail.com>  
> wrote:
> On Tue, Mar 10, 2009 at 10:59 AM, Wei-Dong Lian <weidong.lian at gmail.com 
> > wrote:
> Hello everyone,
>
> I compiled the petsc-3.0.0-p3 with GCC 3.4.3 under linux 64. But the  
> compiler gave me the following information, see result_1.
> I also ran the "make test" and it worked successfully, but when I  
> linked petsc to compile my programme, it told me that information  
> see results_2.
> Any suggestion will be appreciated.
> Thank you in advance.
>
> 1) Any report like this should be sent to petsc-maint at mcs.anl.gov  
> because we need configure.log and make*.log.
>
> 2) The warning about -PIC comes about because we cannot parse the  
> warning messages from your compiler. We can try to
>      add this in when we get the log.
>
> 3) If 'make test' works and your link does not, then you have  
> constructed your link line incorrectly. Are you using the PETSc  
> makefiles?
>
>   Matt
>
>
> Weidong
>
> $$$$$$$$$$$$$$$$$$$$$Result_1$$$$$$$$$$$$$$$$$$$$$$$$$$$$$
> /ftn-custom
> g++: option « -PIC » non reconnue
> libfast in: /usr/local/temp/lian/Develop/latest/Solver/petscSeq/src/ 
> ts/impls
> libfast in: /usr/local/temp/lian/Develop/latest/Solver/petscSeq/src/ 
> ts/impls/explicit
> libfast in: /usr/local/temp/lian/Develop/latest/Solver/petscSeq/src/ 
> ts/impls/explicit/euler
> g++: option « -PIC » non reconnue
> libfast in: /usr/local/temp/lian/Develop/latest/Solver/petscSeq/src/ 
> ts/impls/explicit/rk
> g++: option « -PIC » non reconnue
> libfast in: /usr/local/temp/lian/Develop/latest/Solver/petscSeq/src/ 
> ts/impls/explicit/rk/ftn-auto
> g++: option « -PIC » non reconnue
> libfast in: /usr/local/temp/lian/Develop/latest/Solver/petscSeq/src/ 
> ts/impls/implicit
> libfast in: /usr/local/temp/lian/Develop/latest/Solver/petscSeq/src/ 
> ts/impls/implicit/beuler
> g++: option « -PIC » non reconnue
> libfast in: /usr/local/temp/lian/Develop/latest/Solver/petscSeq/src/ 
> ts/impls/implicit/cn
>
> #####################################results_2 
> ################################
> /usr/local/temp/lian/Develop/Solver/petscSeq/x86_64_linux/lib/ 
> libpetscdm.a(daint.o)(.text+0x2aaf): In function  
> `DAGetWireBasketInterpolation(_p_DA*, _p_Mat*, MatReuse, _p_Mat**)':
> /usr/local/temp/lian/Develop/latest/Solver/petscSeq/src/dm/da/utils/ 
> daint.c:201: undefined reference to `PetscTableCreate(int,  
> _n_PetscTable**)'
> /usr/local/temp/lian/Develop/Solver/petscSeq/x86_64_linux/lib/ 
> libpetscdm.a(daint.o)(.text+0x2b3d):/usr/local/temp/lian/Develop/ 
> latest/Solver/petscSeq/src/dm/da/utils/daint.c:203: undefined  
> reference to `PetscTableAddCount(_n_PetscTable*, int)'
> /usr/local/temp/lian/Develop/Solver/petscSeq/x86_64_linux/lib/ 
> libpetscdm.a(daint.o)(.text+0x2ba1):/usr/local/temp/lian/Develop/ 
> latest/Solver/petscSeq/src/dm/da/utils/daint.c:205: undefined  
> reference to `PetscTableGetCount(_n_PetscTable*, int*)'
> /usr/local/temp/lian/Develop/Solver/petscSeq/x86_64_linux/lib/ 
> libpetscdm.a(daint.o)(.text+0x2d24):/usr/local/temp/lian/Develop/ 
> latest/Solver/petscSeq/src/dm/da/utils/daint.c:209: undefined  
> reference to `PetscTableFind(_n_PetscTable*, int, int*)'
> /usr/local/temp/lian/Develop/Solver/petscSeq/x86_64_linux/lib/ 
> libpetscdm.a(daint.o)(.text+0x2d8d):/usr/local/temp/lian/Develop/ 
> latest/Solver/petscSeq/src/dm/da/utils/daint.c:212: undefined  
> reference to `PetscTableDestroy(_n_PetscTable*)'
> /usr/local/temp/lian/Develop/Solver/petscSeq/x86_64_linux/lib/ 
> libpetscdm.a(daint.o)(.text+0x5adf): In function  
> `DAGetFaceInterpolation(_p_DA*, _p_Mat*, MatReuse, _p_Mat**)':
> #####################################################################################
>
>
> My configuration of petsc:
> &&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&
>
>                             Pushing language C
>                             Popping language C
>                             Pushing language Cxx
>                             Popping language Cxx
>                             Pushing language FC
>                             Popping language FC
> sh: /bin/sh /usr/local/temp/lian/Develop/latest/Solver/OpenSource/ 
> petsc-3.0.0-p3/config/BuildSystem/config/packages/config.gue
> ss
> Executing: /bin/sh /usr/local/temp/lian/Develop/latest/Solver/ 
> OpenSource/petsc-3.0.0-p3/config/BuildSystem/config/packages/con
> fig.guess
> sh: x86_64-unknown-linux-gnu
>
> sh: /bin/sh /usr/local/temp/lian/Develop/latest/Solver/OpenSource/ 
> petsc-3.0.0-p3/config/BuildSystem/config/packages/config.sub
>  x86_64-unknown-linux-gnu
>
> Executing: /bin/sh /usr/local/temp/lian/Develop/latest/Solver/ 
> OpenSource/petsc-3.0.0-p3/config/BuildSystem/config/packages/con
> fig.sub x86_64-unknown-linux-gnu
>
> sh: x86_64-unknown-linux-gnu
>
>
> = 
> = 
> = 
> = 
> = 
> = 
> = 
> = 
> = 
> = 
> ======================================================================
> = 
> = 
> = 
> = 
> = 
> = 
> = 
> = 
> = 
> = 
> ======================================================================
> Starting Configure Run at Tue Mar 10 16:23:30 2009
> Configure Options: --configModules=PETSc.Configure -- 
> optionsModule=PETSc.compilerOptions --with-cc=gcc --with-fc=g77 -- 
> with-cx
> x=g++ --with-mpi=0 --with-x=0 --with-clanguage=cxx --with-shared=1 -- 
> with-dynamic=1
> Working directory: /usr/local/temp/lian/Develop/latest/Solver/ 
> OpenSource/petsc-3.0.0-p3
> Machine uname:
> ('Linux', 'frioul', '2.6.9-22.ELsmp', '#1 SMP Sat Oct 8 21:32:36 BST  
> 2005', 'x86_64')
> Python version:
> 2.3.4 (#1, Feb 17 2005, 21:01:10)
> [GCC 3.4.3 20041212 (Red Hat 3.4.3-9.EL4)]
> = 
> = 
> = 
> = 
> = 
> = 
> = 
> = 
> = 
> = 
> ======================================================================
>         Pushing language C
>         Popping language C
>         Pushing language Cxx
>         Popping language Cxx
>         Pushing language FC
>         Popping language FC
> = 
> = 
> = 
> = 
> = 
> = 
> = 
> = 
> = 
> = 
> ======================================================================
> TEST configureExternalPackagesDir from config.framework(/usr/local/ 
> temp/lian/Develop/latest/Solver/OpenSource/petsc-3.0.0-p3/c
> onfig/BuildSystem/config/framework.py:815)
> TESTING: configureExternalPackagesDir from config.framework(config/ 
> BuildSystem/config/framework.py:815)
> = 
> = 
> = 
> = 
> = 
> = 
> = 
> = 
> = 
> = 
> ======================================================================
> TEST configureLibrary from PETSc.packages.NetCDF(/usr/local/temp/ 
> lian/Develop/latest/Solver/OpenSource/petsc-3.0.0-p3/config/P
> ETSc/packages/NetCDF.py:10)
> TESTING: configureLibrary from PETSc.packages.NetCDF(config/PETSc/ 
> packages/NetCDF.py:10)
>   Find a NetCDF installation and check if it can work with PETSc
> = 
> = 
> = 
> = 
> = 
> = 
> = 
> = 
> = 
> = 
> ======================================================================
> TEST configureLibrary from PETSc.packages.PVODE(/usr/local/temp/lian/ 
> Develop/latest/Solver/OpenSource/petsc-3.0.0-p3/config/PE
> TSc/packages/PVODE.py:10)
> TESTING: configureLibrary from PETSc.packages.PVODE(config/PETSc/ 
> packages/PVODE.py:10)
>   Find a PVODE installation and check if it can work with PETSc
> = 
> = 
> = 
> = 
> = 
> = 
> = 
> = 
> = 
> = 
> ======================================================================
> TEST configureDebuggers from PETSc.utilities.debuggers(/usr/local/ 
> temp/lian/Develop/latest/Solver/OpenSource/petsc-3.0.0-p3/co
> nfig/PETSc/utilities/debuggers.py:22)
> TESTING: configureDebuggers from PETSc.utilities.debuggers(config/ 
> PETSc/utilities/debuggers.py:22)
>   Find a default debugger and determine its arguments
>
>
>
>
> -- 
> What most experimenters take for granted before they begin their  
> experiments is infinitely more interesting than any results to which  
> their experiments lead.
> -- Norbert Wiener
>
>