Hello for compiled problem

[Satish Balay]

Sugest doing the following:

cd src/ksp/ksp/examples/tutorials
make ex2

And now make sure *all* compile and include options are also used in
your makefile. [-PIC is an error - configure should have picked up
-fPIC - not -PIC]

One easy way to do this is to use PETSc makefiles [check
src/ksp/ksp/examples/tutorials/makefile]. This shows how to use PETSc
'make targets and variables.

But since you want to use your own targets - you can pickup atleat the
variables by Perhaps doing the following:

include ${PETSC_DIR}/conf/variables
< now use $(PETSC_LIB) >

Satish




On Tue, 10 Mar 2009, Wei-Dong Lian wrote:

> Hello,
> I am so sorry for that, but you are right. Thanks for your advice and I will
> pay more attention from now on. Thank you very much.
> Weidong
> 
> On Tue, Mar 10, 2009 at 6:43 PM, Barry Smith <bsmith at mcs.anl.gov> wrote:
> 
> >
> >    The order that libraries are listed in a makefile IS IMPORTANT.
> >
> > DDLIBSTATIC := $(ADDLIBSTATIC) $(PETSC_LIBDIR)/libmpiuni.a
> > $(PETSC_LIBDIR)/libpetsccontrib.a $(PETSC_LIBDIR)/libpetscksp.a
> > $(PETSC_LIBDIR)/libpetscsnes.a $(PETSC_LIBDIR)/libpetscvec.a
> > $(PETSC_LIBDIR)/libpetsc.a $(PETSC_LIBDIR)/libpetscdm.a
> > $(PETSC_LIBDIR)/libpetscmat.a $(PETSC_LIBDIR)/libpetscts.a
> >
> > Here you have some crazy, nonsense ordering of the libraries. Whoever made
> > this "makefile" doesn't have a clue about unix; you cannot just dump random
> > strings of characters into files and expect to develop software! It requires
> > some basic understanding of what you are doing.
> >
> >
> >   Barry
> >
> >
> >
> > On Mar 10, 2009, at 11:56 AM, Wei-Dong Lian wrote:
> >
> >  Hello,
> >> Following are my makefile for link petsc. Before I configure with option
> >> fortrun compiler with gfortran, it generates the shared library, now in my
> >> computer with g77, so there is no shared library, I use the static library
> >> as below.
> >> Thanks for your information.
> >> Weidong
> >>
> >> ****************************************************
> >> #FOR PETSC
> >> ifdef HAVE_PETSC
> >> DEFS := $(DEFS) -DHAVE_PETSC
> >> PETSC_DIR=$(DEVROOT)/Solver/petscSeq
> >> PETSC_ARCH=$(ARCHOS)
> >> PETSC_LIBDIR := $(PETSC_DIR)/$(PETSC_ARCH)/lib
> >> INCLUDES := $(INCLUDES) -I$(PETSC_DIR)/include
> >> -I$(PETSC_DIR)/include/mpiuni -I$(PETSC_DIR)/include/adic
> >> -I$(PETSC_DIR)/$(PETSC_ARCH)/include
> >>
> >> ADDLIB := $(ADDLIB) -llapack
> >> #ADDLIB := $(ADDLIB) -L$(PETSC_LIBDIR) -Wl,-rpath,$(PETSC_LIBDIR)
> >> -lpetsccontrib -lpetscksp -lpetscsnes -lpetscvec -lpetsc -lpetscdm
> >> -lpetscmat -lpetscts
> >> ADDLIBSTATIC := $(ADDLIBSTATIC) $(PETSC_LIBDIR)/libmpiuni.a
> >> $(PETSC_LIBDIR)/libpetsccontrib.a $(PETSC_LIBDIR)/libpetscksp.a
> >> $(PETSC_LIBDIR)/libpetscsnes.a $(PETSC_LIBDIR)/libpetscvec.a
> >> $(PETSC_LIBDIR)/libpetsc.a $(PETSC_LIBDIR)/libpetscdm.a
> >> $(PETSC_LIBDIR)/libpetscmat.a $(PETSC_LIBDIR)/libpetscts.a
> >>
> >> endif
> >> #End For PETSC
> >>
> >> *****************************************************************************************
> >> On Tue, Mar 10, 2009 at 5:34 PM, Wei-Dong Lian <weidong.lian at gmail.com>
> >> wrote:
> >> Hi,
> >> I did not use the PETSc makefiles. First I do not know where it located.
> >> Second, I have configured my makefile to link my programme, before it
> >> worked, that's in another computer, the difference lies in the fact that
> >> this time in the lib directory, there were not *.so library, but *.lib
> >> library. Maybe I think it is the problem.
> >> Thanks.
> >> Weidong
> >>
> >>
> >> On Tue, Mar 10, 2009 at 5:07 PM, Matthew Knepley <knepley at gmail.com>
> >> wrote:
> >> On Tue, Mar 10, 2009 at 10:59 AM, Wei-Dong Lian <weidong.lian at gmail.com>
> >> wrote:
> >> Hello everyone,
> >>
> >> I compiled the petsc-3.0.0-p3 with GCC 3.4.3 under linux 64. But the
> >> compiler gave me the following information, see result_1.
> >> I also ran the "make test" and it worked successfully, but when I linked
> >> petsc to compile my programme, it told me that information see results_2.
> >> Any suggestion will be appreciated.
> >> Thank you in advance.
> >>
> >> 1) Any report like this should be sent to petsc-maint at mcs.anl.gov because
> >> we need configure.log and make*.log.
> >>
> >> 2) The warning about -PIC comes about because we cannot parse the warning
> >> messages from your compiler. We can try to
> >>     add this in when we get the log.
> >>
> >> 3) If 'make test' works and your link does not, then you have constructed
> >> your link line incorrectly. Are you using the PETSc makefiles?
> >>
> >>  Matt
> >>
> >>
> >> Weidong
> >>
> >> $$$$$$$$$$$$$$$$$$$$$Result_1$$$$$$$$$$$$$$$$$$$$$$$$$$$$$
> >> /ftn-custom
> >> g++: option « -PIC » non reconnue
> >> libfast in:
> >> /usr/local/temp/lian/Develop/latest/Solver/petscSeq/src/ts/impls
> >> libfast in:
> >> /usr/local/temp/lian/Develop/latest/Solver/petscSeq/src/ts/impls/explicit
> >> libfast in:
> >> /usr/local/temp/lian/Develop/latest/Solver/petscSeq/src/ts/impls/explicit/euler
> >> g++: option « -PIC » non reconnue
> >> libfast in:
> >> /usr/local/temp/lian/Develop/latest/Solver/petscSeq/src/ts/impls/explicit/rk
> >> g++: option « -PIC » non reconnue
> >> libfast in:
> >> /usr/local/temp/lian/Develop/latest/Solver/petscSeq/src/ts/impls/explicit/rk/ftn-auto
> >> g++: option « -PIC » non reconnue
> >> libfast in:
> >> /usr/local/temp/lian/Develop/latest/Solver/petscSeq/src/ts/impls/implicit
> >> libfast in:
> >> /usr/local/temp/lian/Develop/latest/Solver/petscSeq/src/ts/impls/implicit/beuler
> >> g++: option « -PIC » non reconnue
> >> libfast in:
> >> /usr/local/temp/lian/Develop/latest/Solver/petscSeq/src/ts/impls/implicit/cn
> >>
> >>
> >> #####################################results_2################################
> >> /usr/local/temp/lian/Develop/Solver/petscSeq/x86_64_linux/lib/libpetscdm.a(daint.o)(.text+0x2aaf):
> >> In function `DAGetWireBasketInterpolation(_p_DA*, _p_Mat*, MatReuse,
> >> _p_Mat**)':
> >> /usr/local/temp/lian/Develop/latest/Solver/petscSeq/src/dm/da/utils/daint.c:201:
> >> undefined reference to `PetscTableCreate(int, _n_PetscTable**)'
> >> /usr/local/temp/lian/Develop/Solver/petscSeq/x86_64_linux/lib/libpetscdm.a(daint.o)(.text+0x2b3d):/usr/local/temp/lian/Develop/latest/Solver/petscSeq/src/dm/da/utils/daint.c:203:
> >> undefined reference to `PetscTableAddCount(_n_PetscTable*, int)'
> >> /usr/local/temp/lian/Develop/Solver/petscSeq/x86_64_linux/lib/libpetscdm.a(daint.o)(.text+0x2ba1):/usr/local/temp/lian/Develop/latest/Solver/petscSeq/src/dm/da/utils/daint.c:205:
> >> undefined reference to `PetscTableGetCount(_n_PetscTable*, int*)'
> >> /usr/local/temp/lian/Develop/Solver/petscSeq/x86_64_linux/lib/libpetscdm.a(daint.o)(.text+0x2d24):/usr/local/temp/lian/Develop/latest/Solver/petscSeq/src/dm/da/utils/daint.c:209:
> >> undefined reference to `PetscTableFind(_n_PetscTable*, int, int*)'
> >> /usr/local/temp/lian/Develop/Solver/petscSeq/x86_64_linux/lib/libpetscdm.a(daint.o)(.text+0x2d8d):/usr/local/temp/lian/Develop/latest/Solver/petscSeq/src/dm/da/utils/daint.c:212:
> >> undefined reference to `PetscTableDestroy(_n_PetscTable*)'
> >> /usr/local/temp/lian/Develop/Solver/petscSeq/x86_64_linux/lib/libpetscdm.a(daint.o)(.text+0x5adf):
> >> In function `DAGetFaceInterpolation(_p_DA*, _p_Mat*, MatReuse, _p_Mat**)':
> >>
> >> #####################################################################################
> >>
> >>
> >> My configuration of petsc:
> >> &&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&
> >>
> >>                            Pushing language C
> >>                            Popping language C
> >>                            Pushing language Cxx
> >>                            Popping language Cxx
> >>                            Pushing language FC
> >>                            Popping language FC
> >> sh: /bin/sh
> >> /usr/local/temp/lian/Develop/latest/Solver/OpenSource/petsc-3.0.0-p3/config/BuildSystem/config/packages/config.gue
> >> ss
> >> Executing: /bin/sh
> >> /usr/local/temp/lian/Develop/latest/Solver/OpenSource/petsc-3.0.0-p3/config/BuildSystem/config/packages/con
> >> fig.guess
> >> sh: x86_64-unknown-linux-gnu
> >>
> >> sh: /bin/sh
> >> /usr/local/temp/lian/Develop/latest/Solver/OpenSource/petsc-3.0.0-p3/config/BuildSystem/config/packages/config.sub
> >>  x86_64-unknown-linux-gnu
> >>
> >> Executing: /bin/sh
> >> /usr/local/temp/lian/Develop/latest/Solver/OpenSource/petsc-3.0.0-p3/config/BuildSystem/config/packages/con
> >> fig.sub x86_64-unknown-linux-gnu
> >>
> >> sh: x86_64-unknown-linux-gnu
> >>
> >>
> >>
> >> ================================================================================
> >>
> >> ================================================================================
> >> Starting Configure Run at Tue Mar 10 16:23:30 2009
> >> Configure Options: --configModules=PETSc.Configure
> >> --optionsModule=PETSc.compilerOptions --with-cc=gcc --with-fc=g77 --with-cx
> >> x=g++ --with-mpi=0 --with-x=0 --with-clanguage=cxx --with-shared=1
> >> --with-dynamic=1
> >> Working directory:
> >> /usr/local/temp/lian/Develop/latest/Solver/OpenSource/petsc-3.0.0-p3
> >> Machine uname:
> >> ('Linux', 'frioul', '2.6.9-22.ELsmp', '#1 SMP Sat Oct 8 21:32:36 BST
> >> 2005', 'x86_64')
> >> Python version:
> >> 2.3.4 (#1, Feb 17 2005, 21:01:10)
> >> [GCC 3.4.3 20041212 (Red Hat 3.4.3-9.EL4)]
> >>
> >> ================================================================================
> >>        Pushing language C
> >>        Popping language C
> >>        Pushing language Cxx
> >>        Popping language Cxx
> >>        Pushing language FC
> >>        Popping language FC
> >>
> >> ================================================================================
> >> TEST configureExternalPackagesDir from
> >> config.framework(/usr/local/temp/lian/Develop/latest/Solver/OpenSource/petsc-3.0.0-p3/c
> >> onfig/BuildSystem/config/framework.py:815)
> >> TESTING: configureExternalPackagesDir from
> >> config.framework(config/BuildSystem/config/framework.py:815)
> >>
> >> ================================================================================
> >> TEST configureLibrary from
> >> PETSc.packages.NetCDF(/usr/local/temp/lian/Develop/latest/Solver/OpenSource/petsc-3.0.0-p3/config/P
> >> ETSc/packages/NetCDF.py:10)
> >> TESTING: configureLibrary from
> >> PETSc.packages.NetCDF(config/PETSc/packages/NetCDF.py:10)
> >>  Find a NetCDF installation and check if it can work with PETSc
> >>
> >> ================================================================================
> >> TEST configureLibrary from
> >> PETSc.packages.PVODE(/usr/local/temp/lian/Develop/latest/Solver/OpenSource/petsc-3.0.0-p3/config/PE
> >> TSc/packages/PVODE.py:10)
> >> TESTING: configureLibrary from
> >> PETSc.packages.PVODE(config/PETSc/packages/PVODE.py:10)
> >>  Find a PVODE installation and check if it can work with PETSc
> >>
> >> ================================================================================
> >> TEST configureDebuggers from
> >> PETSc.utilities.debuggers(/usr/local/temp/lian/Develop/latest/Solver/OpenSource/petsc-3.0.0-p3/co
> >> nfig/PETSc/utilities/debuggers.py:22)
> >> TESTING: configureDebuggers from
> >> PETSc.utilities.debuggers(config/PETSc/utilities/debuggers.py:22)
> >>  Find a default debugger and determine its arguments
> >>
> >>
> >>
> >>
> >> --
> >> What most experimenters take for granted before they begin their
> >> experiments is infinitely more interesting than any results to which their
> >> experiments lead.
> >> -- Norbert Wiener
> >>
> >>
> >>
> >
>