Hello for compiled problem

Tue Mar 10 11:56:37 CDT 2009

Hello,
Following are my makefile for link petsc. Before I configure with option
fortrun compiler with gfortran, it generates the shared library, now in my
computer with g77, so there is no shared library, I use the static library
as below.
Thanks for your information.
Weidong

****************************************************
#FOR PETSC
ifdef HAVE_PETSC
DEFS := $(DEFS) -DHAVE_PETSC
PETSC_DIR=$(DEVROOT)/Solver/petscSeq
PETSC_ARCH=$(ARCHOS)
PETSC_LIBDIR := $(PETSC_DIR)/$(PETSC_ARCH)/lib
INCLUDES := $(INCLUDES) -I$(PETSC_DIR)/include -I$(PETSC_DIR)/include/mpiuni
-I$(PETSC_DIR)/include/adic -I$(PETSC_DIR)/$(PETSC_ARCH)/include

ADDLIB := $(ADDLIB) -llapack
#ADDLIB := $(ADDLIB) -L$(PETSC_LIBDIR) -Wl,-rpath,$(PETSC_LIBDIR)
-lpetsccontrib -lpetscksp -lpetscsnes -lpetscvec -lpetsc -lpetscdm
-lpetscmat -lpetscts
ADDLIBSTATIC := $(ADDLIBSTATIC) $(PETSC_LIBDIR)/libmpiuni.a
$(PETSC_LIBDIR)/libpetsccontrib.a $(PETSC_LIBDIR)/libpetscksp.a
$(PETSC_LIBDIR)/libpetscsnes.a $(PETSC_LIBDIR)/libpetscvec.a
$(PETSC_LIBDIR)/libpetsc.a $(PETSC_LIBDIR)/libpetscdm.a
$(PETSC_LIBDIR)/libpetscmat.a $(PETSC_LIBDIR)/libpetscts.a

endif
#End For PETSC
*****************************************************************************************
On Tue, Mar 10, 2009 at 5:34 PM, Wei-Dong Lian <weidong.lian at gmail.com>wrote:

> Hi,
> I did not use the PETSc makefiles. First I do not know where it located.
> Second, I have configured my makefile to link my programme, before it
> worked, that's in another computer, the difference lies in the fact that
> this time in the lib directory, there were not *.so library, but *.lib
> library. Maybe I think it is the problem.
> Thanks.
> Weidong
>
>
> On Tue, Mar 10, 2009 at 5:07 PM, Matthew Knepley <knepley at gmail.com>wrote:
>
>> On Tue, Mar 10, 2009 at 10:59 AM, Wei-Dong Lian <weidong.lian at gmail.com>wrote:
>>
>>> Hello everyone,
>>>
>>> I compiled the petsc-3.0.0-p3 with GCC 3.4.3 under linux 64. But the
>>> compiler gave me the following information, see result_1.
>>> I also ran the "make test" and it worked successfully, but when I linked
>>> petsc to compile my programme, it told me that information see results_2.
>>> Any suggestion will be appreciated.
>>> Thank you in advance.
>>
>>
>> 1) Any report like this should be sent to petsc-maint at mcs.anl.gov because
>> we need configure.log and make*.log.
>>
>> 2) The warning about -PIC comes about because we cannot parse the warning
>> messages from your compiler. We can try to
>>      add this in when we get the log.
>>
>> 3) If 'make test' works and your link does not, then you have constructed
>> your link line incorrectly. Are you using the PETSc makefiles?
>>
>>   Matt
>>
>>
>>>
>>> Weidong
>>>
>>> $$$$$$$$$$$$$$$$$$$$$Result_1$$$$$$$$$$$$$$$$$$$$$$$$$$$$$
>>> /ftn-custom
>>> g++: option « -PIC » non reconnue
>>> libfast in:
>>> /usr/local/temp/lian/Develop/latest/Solver/petscSeq/src/ts/impls
>>> libfast in:
>>> /usr/local/temp/lian/Develop/latest/Solver/petscSeq/src/ts/impls/explicit
>>> libfast in:
>>> /usr/local/temp/lian/Develop/latest/Solver/petscSeq/src/ts/impls/explicit/euler
>>> g++: option « -PIC » non reconnue
>>> libfast in:
>>> /usr/local/temp/lian/Develop/latest/Solver/petscSeq/src/ts/impls/explicit/rk
>>> g++: option « -PIC » non reconnue
>>> libfast in:
>>> /usr/local/temp/lian/Develop/latest/Solver/petscSeq/src/ts/impls/explicit/rk/ftn-auto
>>> g++: option « -PIC » non reconnue
>>> libfast in:
>>> /usr/local/temp/lian/Develop/latest/Solver/petscSeq/src/ts/impls/implicit
>>> libfast in:
>>> /usr/local/temp/lian/Develop/latest/Solver/petscSeq/src/ts/impls/implicit/beuler
>>> g++: option « -PIC » non reconnue
>>> libfast in:
>>> /usr/local/temp/lian/Develop/latest/Solver/petscSeq/src/ts/impls/implicit/cn
>>>
>>>
>>> #####################################results_2################################
>>> /usr/local/temp/lian/Develop/Solver/petscSeq/x86_64_linux/lib/libpetscdm.a(daint.o)(.text+0x2aaf):
>>> In function `DAGetWireBasketInterpolation(_p_DA*, _p_Mat*, MatReuse,
>>> _p_Mat**)':
>>> /usr/local/temp/lian/Develop/latest/Solver/petscSeq/src/dm/da/utils/daint.c:201:
>>> undefined reference to `PetscTableCreate(int, _n_PetscTable**)'
>>> /usr/local/temp/lian/Develop/Solver/petscSeq/x86_64_linux/lib/libpetscdm.a(daint.o)(.text+0x2b3d):/usr/local/temp/lian/Develop/latest/Solver/petscSeq/src/dm/da/utils/daint.c:203:
>>> undefined reference to `PetscTableAddCount(_n_PetscTable*, int)'
>>> /usr/local/temp/lian/Develop/Solver/petscSeq/x86_64_linux/lib/libpetscdm.a(daint.o)(.text+0x2ba1):/usr/local/temp/lian/Develop/latest/Solver/petscSeq/src/dm/da/utils/daint.c:205:
>>> undefined reference to `PetscTableGetCount(_n_PetscTable*, int*)'
>>> /usr/local/temp/lian/Develop/Solver/petscSeq/x86_64_linux/lib/libpetscdm.a(daint.o)(.text+0x2d24):/usr/local/temp/lian/Develop/latest/Solver/petscSeq/src/dm/da/utils/daint.c:209:
>>> undefined reference to `PetscTableFind(_n_PetscTable*, int, int*)'
>>> /usr/local/temp/lian/Develop/Solver/petscSeq/x86_64_linux/lib/libpetscdm.a(daint.o)(.text+0x2d8d):/usr/local/temp/lian/Develop/latest/Solver/petscSeq/src/dm/da/utils/daint.c:212:
>>> undefined reference to `PetscTableDestroy(_n_PetscTable*)'
>>> /usr/local/temp/lian/Develop/Solver/petscSeq/x86_64_linux/lib/libpetscdm.a(daint.o)(.text+0x5adf):
>>> In function `DAGetFaceInterpolation(_p_DA*, _p_Mat*, MatReuse, _p_Mat**)':
>>>
>>> #####################################################################################
>>>
>>>
>>> My configuration of petsc:
>>> &&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&
>>>
>>>                             Pushing language C
>>>                             Popping language C
>>>                             Pushing language Cxx
>>>                             Popping language Cxx
>>>                             Pushing language FC
>>>                             Popping language FC
>>> sh: /bin/sh
>>> /usr/local/temp/lian/Develop/latest/Solver/OpenSource/petsc-3.0.0-p3/config/BuildSystem/config/packages/config.gue
>>> ss
>>> Executing: /bin/sh
>>> /usr/local/temp/lian/Develop/latest/Solver/OpenSource/petsc-3.0.0-p3/config/BuildSystem/config/packages/con
>>> fig.guess
>>> sh: x86_64-unknown-linux-gnu
>>>
>>> sh: /bin/sh
>>> /usr/local/temp/lian/Develop/latest/Solver/OpenSource/petsc-3.0.0-p3/config/BuildSystem/config/packages/config.sub
>>>  x86_64-unknown-linux-gnu
>>>
>>> Executing: /bin/sh
>>> /usr/local/temp/lian/Develop/latest/Solver/OpenSource/petsc-3.0.0-p3/config/BuildSystem/config/packages/con
>>> fig.sub x86_64-unknown-linux-gnu
>>>
>>> sh: x86_64-unknown-linux-gnu
>>>
>>>
>>>
>>> ================================================================================
>>>
>>> ================================================================================
>>> Starting Configure Run at Tue Mar 10 16:23:30 2009
>>> Configure Options: --configModules=PETSc.Configure
>>> --optionsModule=PETSc.compilerOptions --with-cc=gcc --with-fc=g77 --with-cx
>>> x=g++ --with-mpi=0 --with-x=0 --with-clanguage=cxx --with-shared=1
>>> --with-dynamic=1
>>> Working directory:
>>> /usr/local/temp/lian/Develop/latest/Solver/OpenSource/petsc-3.0.0-p3
>>> Machine uname:
>>> ('Linux', 'frioul', '2.6.9-22.ELsmp', '#1 SMP Sat Oct 8 21:32:36 BST
>>> 2005', 'x86_64')
>>> Python version:
>>> 2.3.4 (#1, Feb 17 2005, 21:01:10)
>>> [GCC 3.4.3 20041212 (Red Hat 3.4.3-9.EL4)]
>>>
>>> ================================================================================
>>>         Pushing language C
>>>         Popping language C
>>>         Pushing language Cxx
>>>         Popping language Cxx
>>>         Pushing language FC
>>>         Popping language FC
>>>
>>> ================================================================================
>>> TEST configureExternalPackagesDir from
>>> config.framework(/usr/local/temp/lian/Develop/latest/Solver/OpenSource/petsc-3.0.0-p3/c
>>> onfig/BuildSystem/config/framework.py:815)
>>> TESTING: configureExternalPackagesDir from
>>> config.framework(config/BuildSystem/config/framework.py:815)
>>>
>>> ================================================================================
>>> TEST configureLibrary from
>>> PETSc.packages.NetCDF(/usr/local/temp/lian/Develop/latest/Solver/OpenSource/petsc-3.0.0-p3/config/P
>>> ETSc/packages/NetCDF.py:10)
>>> TESTING: configureLibrary from
>>> PETSc.packages.NetCDF(config/PETSc/packages/NetCDF.py:10)
>>>   Find a NetCDF installation and check if it can work with PETSc
>>>
>>> ================================================================================
>>> TEST configureLibrary from
>>> PETSc.packages.PVODE(/usr/local/temp/lian/Develop/latest/Solver/OpenSource/petsc-3.0.0-p3/config/PE
>>> TSc/packages/PVODE.py:10)
>>> TESTING: configureLibrary from
>>> PETSc.packages.PVODE(config/PETSc/packages/PVODE.py:10)
>>>   Find a PVODE installation and check if it can work with PETSc
>>>
>>> ================================================================================
>>> TEST configureDebuggers from
>>> PETSc.utilities.debuggers(/usr/local/temp/lian/Develop/latest/Solver/OpenSource/petsc-3.0.0-p3/co
>>> nfig/PETSc/utilities/debuggers.py:22)
>>> TESTING: configureDebuggers from
>>> PETSc.utilities.debuggers(config/PETSc/utilities/debuggers.py:22)
>>>   Find a default debugger and determine its arguments
>>>
>>>
>>
>>
>> --
>> What most experimenters take for granted before they begin their
>> experiments is infinitely more interesting than any results to which their
>> experiments lead.
>> -- Norbert Wiener
>>
>
>
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