not enough memory?!
Zhifeng Sheng
z.sheng at ewi.tudelft.nl
Fri Nov 2 07:54:28 CDT 2007
Dear all
I have a problem for memory management.
I implemented 3d FEM code and at this moment SeqSBAIJ is used to store
the system matrix, then I used CG method and ICC(k) preconditioner.
The test configuration is not very big, I succeeded in constructing the
system matrix and construct the preconditioner. But when I need to setup
the KSP solver, I got the error message below ( I also dumped some
information about solver and system matrix):
KSP Object:
type: cg
maximum iterations=10000, initial guess is zero
tolerances: relative=1e-09, absolute=1e-50, divergence=10000
left preconditioning
PC Object:
type: icc
ICC: 2 levels of fill
ICC: factor fill ratio allocated 1
linear system matrix = precond matrix:
Matrix Object:
type=seqsbaij, rows=435450, cols=435450
total: nonzeros=9470450, allocated nonzeros=21772580
block size is 1
[0]PETSC ERROR: --------------------- Error Message
------------------------------------
[0]PETSC ERROR: Out of memory. This could be due to allocating
[0]PETSC ERROR: too large an object or bleeding by not properly
[0]PETSC ERROR: destroying unneeded objects.
[0]PETSC ERROR: Memory allocated 375435120 Memory used by process 428597248
[0]PETSC ERROR: Try running with -malloc_dump or -malloc_log for info.
[0]PETSC ERROR: Memory requested 3108507040!
[0]PETSC ERROR:
------------------------------------------------------------------------
[0]PETSC ERROR: Petsc Release Version 2.3.2, Patch 10, Wed Mar 28
19:13:22 CDT 2007 HG revision: d7298c71db7f5e767f359ae35d33cab3bed44428
[0]PETSC ERROR: See docs/changes/index.html for recent updates.
[0]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
[0]PETSC ERROR: See docs/index.html for manual pages.
[0]PETSC ERROR:
------------------------------------------------------------------------
[0]PETSC ERROR: bin/main on a linux-gnu named callisto by zhifeng Fri
Nov 2 13:26:39 2007
[0]PETSC ERROR: Libraries linked from
/u/01/01/zhifeng/install/lib/linux-gnu-c-debug
[0]PETSC ERROR: Configure run at Wed Aug 8 13:46:26 2007
[0]PETSC ERROR: Configure options --with-cc=gcc --with-fc=g77
--download-f-blas-lapack=1 --download-mpich=1
--prefix=/u/01/01/zhifeng/install --with-shared=0
[0]PETSC ERROR:
------------------------------------------------------------------------
[0]PETSC ERROR: PetscMallocAlign() line 61 in src/sys/memory/mal.c
[0]PETSC ERROR: PetscTrMallocDefault() line 194 in src/sys/memory/mtr.c
[0]PETSC ERROR: PetscFreeSpaceGet() line 14 in src/mat/utils/freespace.c
[0]PETSC ERROR: MatICCFactorSymbolic_SeqSBAIJ() line 1648 in
src/mat/impls/sbaij/seq/sbaijfact2.c
[0]PETSC ERROR: MatICCFactorSymbolic() line 4611 in
src/mat/interface/matrix.c
[0]PETSC ERROR: PCSetup_ICC() line 117 in src/ksp/pc/impls/factor/icc/icc.c
[0]PETSC ERROR: PCSetUp() line 801 in src/ksp/pc/interface/precon.c
[0]PETSC ERROR: KSPSetUp() line 234 in src/ksp/ksp/interface/itfunc.c
[0]PETSC ERROR: KSPSolve() line 338 in src/ksp/ksp/interface/itfunc.c
=====================the solver convergence info======================
Convergence in 0 iterations.
=====================================================================
writing solution to file temp_H.vtk ...
number of unknowns >>435450
finishing the numeric solver ...
LSFIM hybrid method for four domain problem
deallocating memory of domain class ...
I debug the code, and the error is dumped by the funciton KSPSetUp()
which should not take so much memory, but still 3108507040 memory was
requested .... I really could not figure out where I need them...
Any help will be appreciated.
Thank you all
Best regards
Zhifeng
More information about the petsc-users
mailing list