[petsc-dev] cuda with kokkos-cuda build fail

Fri Jan 7 13:20:34 CST 2022

Well, this sure looks like it is deterministic:

11:00 130 nid002645 main= perlmutter:~/petsc$ make
PETSC_ARCH=arch-perlmutter-opt-gcc-kokkos-cuda -f gmakefile test
search='ts_utils_dmplexlandau_tutorials-ex1_cuda'
Using MAKEFLAGS: -- search=ts_utils_dmplexlandau_tutorials-ex1_cuda
PETSC_ARCH=arch-perlmutter-opt-gcc-kokkos-cuda
          CC
arch-perlmutter-opt-gcc-kokkos-cuda/tests/ts/utils/dmplexlandau/tutorials/ex1.o
     CLINKER
arch-perlmutter-opt-gcc-kokkos-cuda/tests/ts/utils/dmplexlandau/tutorials/ex1
        TEST
arch-perlmutter-opt-gcc-kokkos-cuda/tests/counts/ts_utils_dmplexlandau_tutorials-ex1_cuda.counts
# retrying ts_utils_dmplexlandau_tutorials-ex1_cuda
not ok ts_utils_dmplexlandau_tutorials-ex1_cuda # Error code: 97
# masses:        e= 9.109e-31; ions in proton mass units:    2.000e+00
 4.000e+00 ...
# charges:       e=-1.602e-19; charges in elementary units:  1.000e+00
 1.800e+01
# n:             e:  1.000e+00                           i:  1.000e+00
 1.000e-05
# thermal T (K): e= 5.802e+07 i= 5.802e+07  5.802e+06. v_0= 2.965e+07 (
9.892e-02c) n_0= 1.000e+20 t_0= 6.470e-05, classical, Intuitive, 1 batched
# Domain radius (AMR levels) grid 0: 5. (2) , 1:  8.252e-02 (1)
# 0) FormLandau 352 IPs, 22 cells total, Nb=16, Nq=16, dim=2, Tab: Nb=16
Nf=3 Np=16 cdim=2 N=324
#  0) species-0: charge density= -1.6024538233648e+01 z-momentum=
-1.7133689250463e-19 energy=  1.2009868166183e+05
#  0) species-1: charge density=  1.6068752193414e+01 z-momentum=
-5.3757901114069e-19 energy=  1.1752123333205e+05
#  0) species-2: charge density=  2.7152642046328e-04 z-momentum=
 3.4016005887213e-21 energy=  1.1701658725855e+00
#  0) Total: charge density=  4.4485486187274e-02, momentum=
-7.0551430305659e-19, energy=  2.3762108515975e+05 (m_i[0]/m_e = 3670.94,
14 cells on electron grid)
# 0 TS dt 0.1 time 0.
# [0]PETSC ERROR: --------------------- Error Message
--------------------------------------------------------------
# [0]PETSC ERROR: GPU error
# [0]PETSC ERROR: cuBLAS error 13 (CUBLAS_STATUS_EXECUTION_FAILED)
# [0]PETSC ERROR: See https://petsc.org/release/faq/ for trouble shooting.
# [0]PETSC ERROR: Petsc Development GIT revision: v3.16.3-511-g96172674f3
 GIT Date: 2022-01-06 23:44:32 +0000
# [0]PETSC ERROR:
/global/u2/m/madams/petsc/arch-perlmutter-opt-gcc-kokkos-cuda/tests/ts/utils/dmplexlandau/tutorials/runex1_cuda/../ex1
on a arch-perlmutter-opt-gcc-kokkos-cuda named nid002645 by madams Fri Jan
 7 11:15:42 2022
# [0]PETSC ERROR: Configure options --CFLAGS="   -g -DLANDAU_DIM=2
-DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4" --CXXFLAGS=" -g -DLANDAU_DIM=2
-DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4" --CUDAFLAGS="-g -Xcompiler
-rdynamic -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4"
--with-cc=cc --with-cxx=CC --with-fc=ftn --LDFLAGS=-lmpifort_gnu_91
--with-cudac=/global/common/software/nersc/cos1.3/cuda/11.3.0/bin/nvcc
--COPTFLAGS="   -O3" --CXXOPTFLAGS=" -O3" --FOPTFLAGS="   -O3"
--with-debugging=0 --download-metis --download-parmetis --with-cuda=1
--with-cuda-arch=80 --with-mpiexec=srun --with-batch=0 --download-p4est=1
--with-zlib=1 --download-kokkos --download-kokkos-kernels
--with-kokkos-kernels-tpl=0 --with-make-np=8
PETSC_ARCH=arch-perlmutter-opt-gcc-kokkos-cuda
# [0]PETSC ERROR: #1 VecNorm_SeqCUDA() at
/global/u2/m/madams/petsc/src/vec/vec/impls/seq/seqcuda/veccuda2.cu:994
# [0]PETSC ERROR: #2 VecNorm() at
/global/u2/m/madams/petsc/src/vec/vec/interface/rvector.c:228
# [0]PETSC ERROR: #3 SNESSolve_NEWTONLS() at
/global/u2/m/madams/petsc/src/snes/impls/ls/ls.c:179
# [0]PETSC ERROR: #4 SNESSolve() at
/global/u2/m/madams/petsc/src/snes/interface/snes.c:4810
# [0]PETSC ERROR: #5 TSStep_ARKIMEX() at
/global/u2/m/madams/petsc/src/ts/impls/arkimex/arkimex.c:845
# [0]PETSC ERROR: #6 TSStep() at
/global/u2/m/madams/petsc/src/ts/interface/ts.c:3572
# [0]PETSC ERROR: #7 TSSolve() at
/global/u2/m/madams/petsc/src/ts/interface/ts.c:3971
# [0]PETSC ERROR: #8 main() at
/global/u2/m/madams/petsc/src/ts/utils/dmplexlandau/tutorials/ex1.c:45
# [0]PETSC ERROR: PETSc Option Table entries:
# [0]PETSC ERROR: -check_pointer_intensity 0
# [0]PETSC ERROR: -dm_landau_amr_levels_max 2,1
# [0]PETSC ERROR: -dm_landau_device_type cuda
# [0]PETSC ERROR: -dm_landau_ion_charges 1,18

On Fri, Jan 7, 2022 at 1:52 PM Junchao Zhang <junchao.zhang at gmail.com>
wrote:

>
>
>
> On Fri, Jan 7, 2022 at 11:17 AM Mark Adams <mfadams at lbl.gov> wrote:
>
>> These are cuda/cusparse tests. The Kokkos versions are fine and cusparse
>> w/o a Kokkos build is fine.
>>
>> I do have some #ifdefs in the code. Maybe something snuck into the #ifdef
>> KOKKOS, but I can't imagine what that could even be.
>>
>> I have had problems with very large "cuda" jobs (on Summit with 21 MPI
>> processes per GPU) running out of "resources" with a Kokkos build, that
>> went away with a pure CUDA build (ie, w/o Kokkos), but these are tiny tests.
>>
> If Kokkos is initialized on MPI ranks, then each rank will consume
> resources on GPU.
>
>>
>> I will try it again.
>>
>> Thanks,
>>
>>
>> On Fri, Jan 7, 2022 at 12:06 PM Junchao Zhang <junchao.zhang at gmail.com>
>> wrote:
>>
>>> It failed when you did not even pass any vec/mat kokkos options?  It
>>> does not make sense and you need to double check that.
>>> --Junchao Zhang
>>>
>>>
>>> On Thu, Jan 6, 2022 at 9:33 PM Mark Adams <mfadams at lbl.gov> wrote:
>>>
>>>> I seem to have a regression with using aijcusprase in a kokkos build.
>>>> It's OK with a straight CUDA build.
>>>>
>>>> # [0]PETSC ERROR: --------------------- Error Message
>>>> --------------------------------------------------------------
>>>> # [0]PETSC ERROR: GPU error
>>>> # [0]PETSC ERROR: cuBLAS error 13 (CUBLAS_STATUS_EXECUTION_FAILED)
>>>> # [0]PETSC ERROR: See https://petsc.org/release/faq/ for trouble
>>>> shooting.
>>>> # [0]PETSC ERROR: Petsc Development GIT revision:
>>>> v3.16.3-511-g96172674f3  GIT Date: 2022-01-06 23:44:32 +0000
>>>> # [0]PETSC ERROR:
>>>> /global/u2/m/madams/petsc_install/petsc/arch-perlmutter-opt-gcc-kokkos-cuda/tests/ts/utils/dmplexlandau/tutorials/runex1_cuda/../ex1
>>>> on a arch-perlmutter-opt-gcc-kokkos-cuda named nid003188 by madams Thu Jan
>>>>  6 19:29:06 2022
>>>> # [0]PETSC ERROR: Configure options --CFLAGS="   -g -DLANDAU_DIM=2
>>>> -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4" --CXXFLAGS=" -g -DLANDAU_DIM=2
>>>> -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4" --CUDAFLAGS="-g -Xcompiler
>>>> -rdynamic -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4"
>>>> --with-cc=cc --with-cxx=CC --with-fc=ftn --LDFLAGS=-lmpifort_gnu_91
>>>> --with-cudac=/global/common/software/nersc/cos1.3/cuda/11.3.0/bin/nvcc
>>>> --COPTFLAGS="   -O3" --CXXOPTFLAGS=" -O3" --FOPTFLAGS="   -O3"
>>>> --with-debugging=0 --download-metis --download-parmetis --with-cuda=1
>>>> --with-cuda-arch=80 --with-mpiexec=srun --with-batch=0 --download-p4est=1
>>>> --with-zlib=1 --download-kokkos --download-kokkos-kernels
>>>> --with-kokkos-kernels-tpl=0 --with-make-np=8
>>>> PETSC_DIR=/global/homes/m/madams/petsc_install/petsc
>>>> PETSC_ARCH=arch-perlmutter-opt-gcc-kokkos-cuda
>>>> # [0]PETSC ERROR: #1 VecNorm_SeqCUDA() at
>>>> /global/u2/m/madams/petsc_install/petsc/src/vec/vec/impls/seq/seqcuda/
>>>> veccuda2.cu:994
>>>> # [0]PETSC ERROR: #2 VecNorm() at
>>>> /global/u2/m/madams/petsc_install/petsc/src/vec/vec/interface/rvector.c:228
>>>> # [0]PETSC ERROR: #3 SNESSolve_NEWTONLS() at
>>>> /global/u2/m/madams/petsc_install/petsc/src/snes/impls/ls/ls.c:179
>>>> # [0]PETSC ERROR: #4 SNESSolve() at
>>>> /global/u2/m/madams/petsc_install/petsc/src/snes/interface/snes.c:4810
>>>> # [0]PETSC ERROR: #5 TSStep_ARKIMEX() at
>>>> /global/u2/m/madams/petsc_install/petsc/src/ts/impls/arkimex/arkimex.c:845
>>>> # [0]PETSC ERROR: #6 TSStep() at
>>>> /global/u2/m/madams/petsc_install/petsc/src/ts/interface/ts.c:3572
>>>> # [0]PETSC ERROR: #7 TSSolve() at
>>>> /global/u2/m/madams/petsc_install/petsc/src/ts/interface/ts.c:3971
>>>> # [0]PETSC ERROR: #8 main() at
>>>> /global/u2/m/madams/petsc_install/petsc/src/ts/utils/dmplexlandau/tutorials/ex1.c:45
>>>> # [0]PETSC ERROR: PETSc Option Table entries:
>>>> # [0]PETSC ERROR: -check_pointer_intensity 0
>>>> # [0]PETSC ERROR: -dm_landau_amr_levels_max 2,1
>>>> # [0]PETSC ERROR: -dm_landau_device_type cuda
>>>> # [0]PETSC ERROR: -dm_landau_ion_charges 1,18
>>>> # [0]PETSC ERROR: -dm_landau_ion_masses 2,4
>>>> # [0]PETSC ERROR: -dm_landau_n 1.00018,1,1e-5
>>>> # [0]PETSC ERROR: -dm_landau_n_0 1e20
>>>> # [0]PETSC ERROR: -dm_landau_num_species_grid 1,2
>>>> # [0]PETSC ERROR: -dm_landau_thermal_temps 5,5,.5
>>>> # [0]PETSC ERROR: -dm_landau_type p4est
>>>> # [0]PETSC ERROR: -dm_mat_type aijcusparse
>>>> # [0]PETSC ERROR: -dm_preallocate_only false
>>>> # [0]PETSC ERROR: -dm_vec_type cuda
>>>> # [0]PETSC ERROR: -error_output_stdout
>>>> # [0]PETSC ERROR: -ksp_type preonly
>>>> # [0]PETSC ERROR: -malloc_dump
>>>> # [0]PETSC ERROR: -mat_cusparse_use_cpu_solve
>>>> # [0]PETSC ERROR: -nox
>>>> # [0]PETSC ERROR: -nox_warning
>>>> # [0]PETSC ERROR: -pc_type lu
>>>> # [0]PETSC ERROR: -petscspace_degree 3
>>>> # [0]PETSC ERROR: -petscspace_poly_tensor 1
>>>> # [0]PETSC ERROR: -snes_converged_reason
>>>> # [0]PETSC ERROR: -snes_monitor
>>>> # [0]PETSC ERROR: -snes_rtol 1.e-14
>>>> # [0]PETSC ERROR: -snes_stol 1.e-14
>>>> # [0]PETSC ERROR: -ts_adapt_clip .5,1.25
>>>> # [0]PETSC ERROR: -ts_adapt_scale_solve_failed 0.75
>>>> # [0]PETSC ERROR: -ts_adapt_time_step_increase_delay 5
>>>> # [0]PETSC ERROR: -ts_arkimex_type 1bee
>>>> # [0]PETSC ERROR: -ts_dt 1.e-1
>>>> # [0]PETSC ERROR: -ts_max_snes_failures -1
>>>> # [0]PETSC ERROR: -ts_max_steps 1
>>>> # [0]PETSC ERROR: -ts_max_time 1
>>>> # [0]PETSC ERROR: -ts_monitor
>>>> # [0]PETSC ERROR: -ts_rtol 1e-1
>>>> # [0]PETSC ERROR: -ts_type arkimex
>>>> # [0]PETSC ERROR: -use_gpu_aware_mpi 0
>>>> # [0]PETSC ERROR: ----------------End of Error Message -------send
>>>> entire error message to petsc-maint at mcs.anl.gov----------
>>>>
>>>
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