[petsc-dev] Cannot locate file: share/petsc/datafiles/matrices/small
Stefano Zampini
stefano.zampini at gmail.com
Tue Sep 14 01:35:10 CDT 2021
I can reproduce it even with OpenMPI 4.1.1 on a different machine (Ubuntu
18 + AMD milan + clang from AOCC) and it is definitely an OpenMPI bug in
the vader BTL If I use tcp, everything runs smooth
zampins at kanary:~/Devel/petsc$ cat
/home/zampins/local/etc/openmpi-mca-params.conf | grep btl
btl = tcp,self
zampins at kanary:~/Devel/petsc$ make -f gmakefile.test
vec_is_sf_tutorials-ex1_4
Using MAKEFLAGS:
TEST arch-debug/tests/counts/vec_is_sf_tutorials-ex1_4.counts
ok vec_is_sf_tutorials-ex1_4+sf_window_sync-fence_sf_window_flavor-create
ok
diff-vec_is_sf_tutorials-ex1_4+sf_window_sync-fence_sf_window_flavor-create
ok vec_is_sf_tutorials-ex1_4+sf_window_sync-fence_sf_window_flavor-dynamic
ok
diff-vec_is_sf_tutorials-ex1_4+sf_window_sync-fence_sf_window_flavor-dynamic
ok vec_is_sf_tutorials-ex1_4+sf_window_sync-fence_sf_window_flavor-allocate
ok
diff-vec_is_sf_tutorials-ex1_4+sf_window_sync-fence_sf_window_flavor-allocate
ok vec_is_sf_tutorials-ex1_4+sf_window_sync-active_sf_window_flavor-create
ok
diff-vec_is_sf_tutorials-ex1_4+sf_window_sync-active_sf_window_flavor-create
ok vec_is_sf_tutorials-ex1_4+sf_window_sync-active_sf_window_flavor-dynamic
ok
diff-vec_is_sf_tutorials-ex1_4+sf_window_sync-active_sf_window_flavor-dynamic
ok
vec_is_sf_tutorials-ex1_4+sf_window_sync-active_sf_window_flavor-allocate
ok
diff-vec_is_sf_tutorials-ex1_4+sf_window_sync-active_sf_window_flavor-allocate
ok vec_is_sf_tutorials-ex1_4+sf_window_sync-lock_sf_window_flavor-create
ok
diff-vec_is_sf_tutorials-ex1_4+sf_window_sync-lock_sf_window_flavor-create
ok vec_is_sf_tutorials-ex1_4+sf_window_sync-lock_sf_window_flavor-dynamic
ok
diff-vec_is_sf_tutorials-ex1_4+sf_window_sync-lock_sf_window_flavor-dynamic
ok vec_is_sf_tutorials-ex1_4+sf_window_sync-lock_sf_window_flavor-allocate
ok
diff-vec_is_sf_tutorials-ex1_4+sf_window_sync-lock_sf_window_flavor-allocate
zampins at kanary:~/Devel/petsc$ cat
/home/zampins/local/etc/openmpi-mca-params.conf | grep btl
btl = vader,tcp,self
zampins at kanary:~/Devel/petsc$ make -f gmakefile.test
vec_is_sf_tutorials-ex1_4
Using MAKEFLAGS:
TEST arch-debug/tests/counts/vec_is_sf_tutorials-ex1_4.counts
ok vec_is_sf_tutorials-ex1_4+sf_window_sync-fence_sf_window_flavor-create
not ok
diff-vec_is_sf_tutorials-ex1_4+sf_window_sync-fence_sf_window_flavor-create
# Error code: 1
# 43,46c43,46
# < [0] 0: 4001 2000 2002 3002 4002
# < [1] 0: 1001 3000
# < [2] 0: 2001 4000
# < [3] 0: 3001 1000
# ---
# > [0] 0: 2002 2146435072 2 2146435072 38736240
# > [1] 0: 3000 2146435072
# > [2] 0: 2001 2146435072
# > [3] 0: 3001 2146435072
ok vec_is_sf_tutorials-ex1_4+sf_window_sync-fence_sf_window_flavor-dynamic
not ok
diff-vec_is_sf_tutorials-ex1_4+sf_window_sync-fence_sf_window_flavor-dynamic
# Error code: 1
# 43,46c43,46
# < [0] 0: 4001 2000 2002 3002 4002
# < [1] 0: 1001 3000
# < [2] 0: 2001 4000
# < [3] 0: 3001 1000
# ---
# > [0] 0: 2002 2146435072 2 2146435072 0
# > [1] 0: 3000 2146435072
# > [2] 0: 2001 2146435072
# > [3] 0: 3001 2146435072
ok vec_is_sf_tutorials-ex1_4+sf_window_sync-fence_sf_window_flavor-allocate
ok
diff-vec_is_sf_tutorials-ex1_4+sf_window_sync-fence_sf_window_flavor-allocate
# retrying
vec_is_sf_tutorials-ex1_4+sf_window_sync-active_sf_window_flavor-create
not ok
vec_is_sf_tutorials-ex1_4+sf_window_sync-active_sf_window_flavor-create #
Error code: 98
# [1]PETSC ERROR: --------------------- Error Message
--------------------------------------------------------------
# [1]PETSC ERROR: General MPI error
# [1]PETSC ERROR: MPI error 6 MPI_ERR_RANK: invalid rank
# [1]PETSC ERROR: See https://petsc.org/release/faq/ for trouble shooting.
# [1]PETSC ERROR: Petsc Development GIT revision: v3.15.4-783-g168bb9f76b
GIT Date: 2021-09-13 14:01:22 +0000
# [1]PETSC ERROR: ../ex1 on a arch-debug named kanary.kaust.edu.sa by
zampins Tue Sep 14 09:31:42 2021
# [1]PETSC ERROR: [2]PETSC ERROR: --------------------- Error Message
--------------------------------------------------------------
# [2]PETSC ERROR: General MPI error
# [2]PETSC ERROR: MPI error 6 MPI_ERR_RANK: invalid rank
# [2]PETSC ERROR: See https://petsc.org/release/faq/ for trouble shooting.
# [2]PETSC ERROR: Petsc Development GIT revision: v3.15.4-783-g168bb9f76b
GIT Date: 2021-09-13 14:01:22 +0000
# [2]PETSC ERROR: ../ex1 on a arch-debug named kanary.kaust.edu.sa by
zampins Tue Sep 14 09:31:42 2021
# [2]PETSC ERROR: Configure options --with-cc=/home/zampins/local/bin/mpicc
--with-cxx-dialect=c++14 --with-cxx=/home/zampins/local/bin/mpicxx
--with-debugging=1 --with-fc=/home/zampins/local/bin/mpifort
--with-fortran-bindings=0 --with-hip-dir=/opt/rocm --with-hip=1
--with-hypre-dir=/home/zampins/local-petsc
--with-kokkos-dir=/home/zampins/local-petsc
--with-kokkos-kernels-dir=/home/zampins/local-petsc
--with-blaslapack-include=/home/zampins/local-aocl/aocc/3.0-6/include
--with-blaslapack-lib="[/home/zampins/local-aocl/aocc/3.0-6/lib/liblapacke.a,/home/zampins/local-aocl/aocc/3.0-6/lib/libflame.a,/home/zampins/local-aocl/aocc/3.0-6/lib/libblis-mt.a]"
HIPFLAGS=--amdgpu-target=gfx908
HIPPPFLAGS=-I/home/zampins/local-petsc/include PETSC_ARCH=arch-debug
# [2]PETSC ERROR: #1 PetscSFGetGroups() at
/home/zampins/Devel/petsc/src/vec/is/sf/interface/sf.c:1166
# [2]PETSC ERROR: #2 PetscSFSetUp_Window() at
/home/zampins/Devel/petsc/src/vec/is/sf/impls/window/sfwindow.c:708
# [2]PETSC ERROR: #3 PetscSFSetUp() at
/home/zampins/Devel/petsc/src/vec/is/sf/interface/sf.c:318
# [2]PETSC ERROR: #4 main() at
/home/zampins/Devel/petsc/src/vec/is/sf/tutorials/ex1.c:172
# [2]PETSC ERROR: PETSc Option Table entries:
# [2]PETSC ERROR: -sf_type window
# [2]PETSC ERROR: -sf_window_flavor create
# [2]PETSC ERROR: -sf_window_sync active
# [2]PETSC ERROR: -test_gather
# [2]PETSC ERROR: ----------------End of Error Message -------send entire
error message to petsc-maint at mcs.anl.gov----------
# [3]PETSC ERROR: --------------------- Error Message
--------------------------------------------------------------
# [3]PETSC ERROR: General MPI error
# [3]PETSC ERROR: MPI error 6 MPI_ERR_RANK: invalid rank
# [3]PETSC ERROR: See https://petsc.org/release/faq/ for trouble shooting.
# [3]PETSC ERROR: Petsc Development GIT revision: v3.15.4-783-g168bb9f76b
GIT Date: 2021-09-13 14:01:22 +0000
# [3]PETSC ERROR: ../ex1 on a arch-debug named kanary.kaust.edu.sa by
zampins Tue Sep 14 09:31:42 2021
# [3]PETSC ERROR: Configure options --with-cc=/home/zampins/local/bin/mpicc
--with-cxx-dialect=c++14 --with-cxx=/home/zampins/local/bin/mpicxx
--with-debugging=1 --with-fc=/home/zampins/local/bin/mpifort
--with-fortran-bindings=0 --with-hip-dir=/opt/rocm --with-hip=1
--with-hypre-dir=/home/zampins/local-petsc
--with-kokkos-dir=/home/zampins/local-petsc
--with-kokkos-kernels-dir=/home/zampins/local-petsc
--with-blaslapack-include=/home/zampins/local-aocl/aocc/3.0-6/include
--with-blaslapack-lib="[/home/zampins/local-aocl/aocc/3.0-6/lib/liblapacke.a,/home/zampins/local-aocl/aocc/3.0-6/lib/libflame.a,/home/zampins/local-aocl/aocc/3.0-6/lib/libblis-mt.a]"
HIPFLAGS=--amdgpu-target=gfx908
HIPPPFLAGS=-I/home/zampins/local-petsc/include PETSC_ARCH=arch-debug
# [3]PETSC ERROR: #1 PetscSFGetGroups() at
/home/zampins/Devel/petsc/src/vec/is/sf/interface/sf.c:1166
# [3]PETSC ERROR: #2 PetscSFSetUp_Window() at
/home/zampins/Devel/petsc/src/vec/is/sf/impls/window/sfwindow.c:708
# [3]PETSC ERROR: #3 PetscSFSetUp() at
/home/zampins/Devel/petsc/src/vec/is/sf/interface/sf.c:318
# [3]PETSC ERROR: #4 main() at
/home/zampins/Devel/petsc/src/vec/is/sf/tutorials/ex1.c:172
# [3]PETSC ERROR: PETSc Option Table entries:
# [3]PETSC ERROR: -sf_type window
# [3]PETSC ERROR: -sf_window_flavor create
# [3]PETSC ERROR: Configure options --with-cc=/home/zampins/local/bin/mpicc
--with-cxx-dialect=c++14 --with-cxx=/home/zampins/local/bin/mpicxx
--with-debugging=1 --with-fc=/home/zampins/local/bin/mpifort
--with-fortran-bindings=0 --with-hip-dir=/opt/rocm --with-hip=1
--with-hypre-dir=/home/zampins/local-petsc
--with-kokkos-dir=/home/zampins/local-petsc
--with-kokkos-kernels-dir=/home/zampins/local-petsc
--with-blaslapack-include=/home/zampins/local-aocl/aocc/3.0-6/include
--with-blaslapack-lib="[/home/zampins/local-aocl/aocc/3.0-6/lib/liblapacke.a,/home/zampins/local-aocl/aocc/3.0-6/lib/libflame.a,/home/zampins/local-aocl/aocc/3.0-6/lib/libblis-mt.a]"
HIPFLAGS=--amdgpu-target=gfx908
HIPPPFLAGS=-I/home/zampins/local-petsc/include PETSC_ARCH=arch-debug
# [1]PETSC ERROR: #1 PetscSFGetGroups() at
/home/zampins/Devel/petsc/src/vec/is/sf/interface/sf.c:1166
# [1]PETSC ERROR: #2 PetscSFSetUp_Window() at
/home/zampins/Devel/petsc/src/vec/is/sf/impls/window/sfwindow.c:708
# [1]PETSC ERROR: #3 PetscSFSetUp() at
/home/zampins/Devel/petsc/src/vec/is/sf/interface/sf.c:318
# [1]PETSC ERROR: #4 main() at
/home/zampins/Devel/petsc/src/vec/is/sf/tutorials/ex1.c:172
# [1]PETSC ERROR: PETSc Option Table entries:
# [1]PETSC ERROR: -sf_type window
# [1]PETSC ERROR: -sf_window_flavor create
# [1]PETSC ERROR: -sf_window_sync active
# [1]PETSC ERROR: -test_gather
# [1]PETSC ERROR: ----------------End of Error Message -------send entire
error message to petsc-maint at mcs.anl.gov----------
# -sf_window_sync active
# [3]PETSC ERROR: -test_gather
# [3]PETSC ERROR: ----------------End of Error Message -------send entire
error message to petsc-maint at mcs.anl.gov----------
# --------------------------------------------------------------------------
# MPI_ABORT was invoked on rank 2 in communicator MPI_COMM_WORLD
# with errorcode 98.
#
# NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes.
# You may or may not see output from other processes, depending on
# exactly when Open MPI kills them.
# --------------------------------------------------------------------------
# [kanary.kaust.edu.sa:115527] 2 more processes have sent help message
help-mpi-api.txt / mpi-abort
# [kanary.kaust.edu.sa:115527] Set MCA parameter "orte_base_help_aggregate"
to 0 to see all help / error messages
ok vec_is_sf_tutorials-ex1_4 # SKIP Command failed so no diff
# retrying
vec_is_sf_tutorials-ex1_4+sf_window_sync-active_sf_window_flavor-dynamic
not ok
vec_is_sf_tutorials-ex1_4+sf_window_sync-active_sf_window_flavor-dynamic #
Error code: 98
# [1]PETSC ERROR: --------------------- Error Message
--------------------------------------------------------------
# [1]PETSC ERROR: General MPI error
# [1]PETSC ERROR: MPI error 6 MPI_ERR_RANK: invalid rank
# [1]PETSC ERROR: See https://petsc.org/release/faq/ for trouble shooting.
# [1]PETSC ERROR: Petsc Development GIT revision: v3.15.4-783-g168bb9f76b
GIT Date: 2021-09-13 14:01:22 +0000
# [1]PETSC ERROR: ../ex1 on a arch-debug named kanary.kaust.edu.sa by
zampins Tue Sep 14 09:31:45 2021
# [1]PETSC ERROR: Configure options --with-cc=/home/zampins/local/bin/mpicc
--with-cxx-dialect=c++14 --with-cxx=/home/zampins/local/bin/mpicxx
--with-debugging=1 --with-fc=/home/zampins/local/bin/mpifort
--with-fortran-bindings=0 --with-hip-dir=/opt/rocm --with-hip=1
--with-hypre-dir=/home/zampins/local-petsc
--with-kokkos-dir=/home/zampins/local-petsc
--with-kokkos-kernels-dir=/home/zampins/local-petsc
--with-blaslapack-include=/home/zampins/local-aocl/aocc/3.0-6/include
--with-blaslapack-lib="[/home/zampins/local-aocl/aocc/3.0-6/lib/liblapacke.a,/home/zampins/local-aocl/aocc/3.0-6/lib/libflame.a,/home/zampins/local-aocl/aocc/3.0-6/lib/libblis-mt.a]"
HIPFLAGS=--amdgpu-target=gfx908
HIPPPFLAGS=-I/home/zampins/local-petsc/include PETSC_ARCH=arch-debug
# [1]PETSC ERROR: #1 PetscSFGetGroups() at
/home/zampins/Devel/petsc/src/vec/is/sf/interface/sf.c:1166
# [1]PETSC ERROR: #2 PetscSFSetUp_Window() at
/home/zampins/Devel/petsc/src/vec/is/sf/impls/window/sfwindow.c:708
# [1]PETSC ERROR: #3 PetscSFSetUp() at
/home/zampins/Devel/petsc/src/vec/is/sf/interface/sf.c:318
# [1]PETSC ERROR: #4 main() at
/home/zampins/Devel/petsc/src/vec/is/sf/tutorials/ex1.c:172
# [1]PETSC ERROR: PETSc Option Table entries:
# [1]PETSC ERROR: -sf_type window
# [1]PETSC ERROR: [2]PETSC ERROR: --------------------- Error Message
--------------------------------------------------------------
# [2]PETSC ERROR: General MPI error
# [2]PETSC ERROR: MPI error 6 MPI_ERR_RANK: invalid rank
# [2]PETSC ERROR: See https://petsc.org/release/faq/ for trouble shooting.
# [2]PETSC ERROR: Petsc Development GIT revision: v3.15.4-783-g168bb9f76b
GIT Date: 2021-09-13 14:01:22 +0000
# [2]PETSC ERROR: ../ex1 on a arch-debug named kanary.kaust.edu.sa by
zampins Tue Sep 14 09:31:45 2021
# [2]PETSC ERROR: Configure options --with-cc=/home/zampins/local/bin/mpicc
--with-cxx-dialect=c++14 --with-cxx=/home/zampins/local/bin/mpicxx
--with-debugging=1 --with-fc=/home/zampins/local/bin/mpifort
--with-fortran-bindings=0 --with-hip-dir=/opt/rocm --with-hip=1
--with-hypre-dir=/home/zampins/local-petsc
--with-kokkos-dir=/home/zampins/local-petsc
--with-kokkos-kernels-dir=/home/zampins/local-petsc
--with-blaslapack-include=/home/zampins/local-aocl/aocc/3.0-6/include
--with-blaslapack-lib="[/home/zampins/local-aocl/aocc/3.0-6/lib/liblapacke.a,/home/zampins/local-aocl/aocc/3.0-6/lib/libflame.a,/home/zampins/local-aocl/aocc/3.0-6/lib/libblis-mt.a]"
HIPFLAGS=--amdgpu-target=gfx908
HIPPPFLAGS=-I/home/zampins/local-petsc/include PETSC_ARCH=arch-debug
# [2]PETSC ERROR: #1 PetscSFGetGroups() at
/home/zampins/Devel/petsc/src/vec/is/sf/interface/sf.c:1166
# [2]PETSC ERROR: #2 PetscSFSetUp_Window() at
/home/zampins/Devel/petsc/src/vec/is/sf/impls/window/sfwindow.c:708
# [2]PETSC ERROR: #3 PetscSFSetUp() at
/home/zampins/Devel/petsc/src/vec/is/sf/interface/sf.c:318
# [2]PETSC ERROR: #4 main() at
/home/zampins/Devel/petsc/src/vec/is/sf/tutorials/ex1.c:172
# [2]PETSC ERROR: PETSc Option Table entries:
# [2]PETSC ERROR: -sf_type window
# [2]PETSC ERROR: -sf_window_flavor dynamic
# [2]PETSC ERROR: -sf_window_sync active
# [2]PETSC ERROR: -test_gather
# [2]PETSC ERROR: ----------------End of Error Message -------send entire
error message to petsc-maint at mcs.anl.gov----------
# [3]PETSC ERROR: --------------------- Error Message
--------------------------------------------------------------
# [3]PETSC ERROR: General MPI error
# [3]PETSC ERROR: MPI error 6 MPI_ERR_RANK: invalid rank
# [3]PETSC ERROR: See https://petsc.org/release/faq/ for trouble shooting.
# [3]PETSC ERROR: Petsc Development GIT revision: v3.15.4-783-g168bb9f76b
GIT Date: 2021-09-13 14:01:22 +0000
# [3]PETSC ERROR: ../ex1 on a arch-debug named kanary.kaust.edu.sa by
zampins Tue Sep 14 09:31:45 2021
# [3]PETSC ERROR: Configure options --with-cc=/home/zampins/local/bin/mpicc
--with-cxx-dialect=c++14 --with-cxx=/home/zampins/local/bin/mpicxx
--with-debugging=1 --with-fc=/home/zampins/local/bin/mpifort
--with-fortran-bindings=0 --with-hip-dir=/opt/rocm --with-hip=1
--with-hypre-dir=/home/zampins/local-petsc
--with-kokkos-dir=/home/zampins/local-petsc
--with-kokkos-kernels-dir=/home/zampins/local-petsc
--with-blaslapack-include=/home/zampins/local-aocl/aocc/3.0-6/include
--with-blaslapack-lib="[/home/zampins/local-aocl/aocc/3.0-6/lib/liblapacke.a,/home/zampins/local-aocl/aocc/3.0-6/lib/libflame.a,/home/zampins/local-aocl/aocc/3.0-6/lib/libblis-mt.a]"
HIPFLAGS=--amdgpu-target=gfx908
HIPPPFLAGS=-I/home/zampins/local-petsc/include PETSC_ARCH=arch-debug
# [3]PETSC ERROR: #1 PetscSFGetGroups() at
/home/zampins/Devel/petsc/src/vec/is/sf/interface/sf.c:1166
# [3]PETSC ERROR: #2 PetscSFSetUp_Window() at
/home/zampins/Devel/petsc/src/vec/is/sf/impls/window/sfwindow.c:708
# [3]PETSC ERROR: #3 PetscSFSetUp() at
/home/zampins/Devel/petsc/src/vec/is/sf/interface/sf.c:318
# [3]PETSC ERROR: #4 main() at
/home/zampins/Devel/petsc/src/vec/is/sf/tutorials/ex1.c:172
# [3]PETSC ERROR: PETSc Option Table entries:
# [3]PETSC ERROR: -sf_type window
# [3]PETSC ERROR: -sf_window_flavor dynamic
# [3]PETSC ERROR: -sf_window_sync active
# [3]PETSC ERROR: -test_gather
# [3]PETSC ERROR: ----------------End of Error Message -------send entire
error message to petsc-maint at mcs.anl.gov----------
# -sf_window_flavor dynamic
# [1]PETSC ERROR: -sf_window_sync active
# [1]PETSC ERROR: -test_gather
# [1]PETSC ERROR: ----------------End of Error Message -------send entire
error message to petsc-maint at mcs.anl.gov----------
# --------------------------------------------------------------------------
# MPI_ABORT was invoked on rank 3 in communicator MPI_COMM_WORLD
# with errorcode 98.
#
# NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes.
# You may or may not see output from other processes, depending on
# exactly when Open MPI kills them.
# --------------------------------------------------------------------------
# [kanary.kaust.edu.sa:115572] 2 more processes have sent help message
help-mpi-api.txt / mpi-abort
# [kanary.kaust.edu.sa:115572] Set MCA parameter "orte_base_help_aggregate"
to 0 to see all help / error messages
ok vec_is_sf_tutorials-ex1_4 # SKIP Command failed so no diff
ok
vec_is_sf_tutorials-ex1_4+sf_window_sync-active_sf_window_flavor-allocate
ok
diff-vec_is_sf_tutorials-ex1_4+sf_window_sync-active_sf_window_flavor-allocate
ok vec_is_sf_tutorials-ex1_4+sf_window_sync-lock_sf_window_flavor-create
not ok
diff-vec_is_sf_tutorials-ex1_4+sf_window_sync-lock_sf_window_flavor-create
# Error code: 1
# 43,46c43,46
# < [0] 0: 4001 2000 2002 3002 4002
# < [1] 0: 1001 3000
# < [2] 0: 2001 4000
# < [3] 0: 3001 1000
# ---
# > [0] 0: 4002 2146435072 2 2146435072 34619728
# > [1] 0: 3000 2146435072
# > [2] 0: 4000 2146435072
# > [3] 0: 3001 2146435072
ok vec_is_sf_tutorials-ex1_4+sf_window_sync-lock_sf_window_flavor-dynamic
not ok
diff-vec_is_sf_tutorials-ex1_4+sf_window_sync-lock_sf_window_flavor-dynamic
# Error code: 1
# 43,46c43,46
# < [0] 0: 4001 2000 2002 3002 4002
# < [1] 0: 1001 3000
# < [2] 0: 2001 4000
# < [3] 0: 3001 1000
# ---
# > [0] 0: 4002 2146435072 2 2146435072 0
# > [1] 0: 3000 2146435072
# > [2] 0: 4000 2146435072
# > [3] 0: 3001 2146435072
ok vec_is_sf_tutorials-ex1_4+sf_window_sync-lock_sf_window_flavor-allocate
ok
diff-vec_is_sf_tutorials-ex1_4+sf_window_sync-lock_sf_window_flavor-allocate
Il giorno mar 14 set 2021 alle ore 07:44 Stefano Zampini <
stefano.zampini at gmail.com> ha scritto:
> I'll see if I can reproduce
>
> Il Mar 14 Set 2021, 06:58 Junchao Zhang <junchao.zhang at gmail.com> ha
> scritto:
>
>> Hi, Stefano,
>> Ping you again to see if you want to resolve this problem before
>> petsc-3.16
>>
>> --Junchao Zhang
>>
>>
>> On Sun, Sep 12, 2021 at 3:06 PM Antonio T. sagitter <
>> sagitter at fedoraproject.org> wrote:
>>
>>> Unfortunately, it's not possible. I must use the OpenMPI provided by
>>> Fedora build-system (these rpm builds of PETSc are for Fedora's
>>> repositories), downloading external software is not permitted.
>>>
>>> On 9/12/21 21:10, Pierre Jolivet wrote:
>>> >
>>> >> On 12 Sep 2021, at 8:56 PM, Matthew Knepley <knepley at gmail.com
>>> >> <mailto:knepley at gmail.com>> wrote:
>>> >>
>>> >> On Sun, Sep 12, 2021 at 2:49 PM Antonio T. sagitter
>>> >> <sagitter at fedoraproject.org <mailto:sagitter at fedoraproject.org>>
>>> wrote:
>>> >>
>>> >> Those attached are configure.log/make.log from a MPI build in
>>> >> Fedora 34
>>> >> x86_64 where the error below occurred.
>>> >>
>>> >>
>>> >> This is OpenMPI 4.1.0. Is that the only MPI you build? My first
>>> >> inclination is that this is an MPI implementation bug.
>>> >>
>>> >> Junchao, do we have an OpenMPI build in the CI?
>>> >
>>> > config/examples/arch-ci-linux-cuda-double-64idx.py:
>>> > '--download-openmpi=1',
>>> > config/examples/arch-ci-linux-pkgs-dbg-ftn-interfaces.py:
>>> > '--download-openmpi=1',
>>> > config/examples/arch-ci-linux-pkgs-opt.py: '--download-openmpi=1',
>>> >
>>> > config/BuildSystem/config/packages/OpenMPI.py uses version 4.1.0 as
>>> well.
>>> > I’m not sure PETSc is to blame here Antonio. You may want to try to
>>> > ditch the OpenMPI shipped by your packet manager and try
>>> > --download-openmpi as well, just for a quick sanity check.
>>> >
>>> > Thanks,
>>> > Pierre
>>> >
>>>
>>> --
>>> ---
>>> Antonio Trande
>>> Fedora Project
>>> mailto: sagitter at fedoraproject.org
>>> GPG key: 0x29FBC85D7A51CC2F
>>> GPG key server: https://keyserver1.pgp.com/
>>>
>>
--
Stefano
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://lists.mcs.anl.gov/pipermail/petsc-dev/attachments/20210914/1d6f413f/attachment-0001.html>
More information about the petsc-dev
mailing list