[petsc-dev] Cannot locate file: share/petsc/datafiles/matrices/small

Matthew Knepley knepley at gmail.com
Tue Sep 14 06:17:12 CDT 2021 

Okay, we have to send this to OpenMPI. Volunteers?

Maybe we should note this in the FAQ, or installation, so we remember how
to fix it if someone else asks?

  Thanks,

     Matt

On Tue, Sep 14, 2021 at 2:35 AM Stefano Zampini <stefano.zampini at gmail.com>
wrote:

> I can reproduce it even with OpenMPI 4.1.1 on a different machine (Ubuntu
> 18 + AMD milan + clang from AOCC)  and it is definitely an OpenMPI bug in
> the vader BTL If I use tcp, everything runs smooth
>
> zampins at kanary:~/Devel/petsc$ cat
> /home/zampins/local/etc/openmpi-mca-params.conf | grep btl
> btl = tcp,self
> zampins at kanary:~/Devel/petsc$ make -f gmakefile.test
> vec_is_sf_tutorials-ex1_4
> Using MAKEFLAGS:
>         TEST arch-debug/tests/counts/vec_is_sf_tutorials-ex1_4.counts
>  ok vec_is_sf_tutorials-ex1_4+sf_window_sync-fence_sf_window_flavor-create
>  ok
> diff-vec_is_sf_tutorials-ex1_4+sf_window_sync-fence_sf_window_flavor-create
>  ok vec_is_sf_tutorials-ex1_4+sf_window_sync-fence_sf_window_flavor-dynamic
>  ok
> diff-vec_is_sf_tutorials-ex1_4+sf_window_sync-fence_sf_window_flavor-dynamic
>  ok
> vec_is_sf_tutorials-ex1_4+sf_window_sync-fence_sf_window_flavor-allocate
>  ok
> diff-vec_is_sf_tutorials-ex1_4+sf_window_sync-fence_sf_window_flavor-allocate
>  ok vec_is_sf_tutorials-ex1_4+sf_window_sync-active_sf_window_flavor-create
>  ok
> diff-vec_is_sf_tutorials-ex1_4+sf_window_sync-active_sf_window_flavor-create
>  ok
> vec_is_sf_tutorials-ex1_4+sf_window_sync-active_sf_window_flavor-dynamic
>  ok
> diff-vec_is_sf_tutorials-ex1_4+sf_window_sync-active_sf_window_flavor-dynamic
>  ok
> vec_is_sf_tutorials-ex1_4+sf_window_sync-active_sf_window_flavor-allocate
>  ok
> diff-vec_is_sf_tutorials-ex1_4+sf_window_sync-active_sf_window_flavor-allocate
>  ok vec_is_sf_tutorials-ex1_4+sf_window_sync-lock_sf_window_flavor-create
>  ok
> diff-vec_is_sf_tutorials-ex1_4+sf_window_sync-lock_sf_window_flavor-create
>  ok vec_is_sf_tutorials-ex1_4+sf_window_sync-lock_sf_window_flavor-dynamic
>  ok
> diff-vec_is_sf_tutorials-ex1_4+sf_window_sync-lock_sf_window_flavor-dynamic
>  ok vec_is_sf_tutorials-ex1_4+sf_window_sync-lock_sf_window_flavor-allocate
>  ok
> diff-vec_is_sf_tutorials-ex1_4+sf_window_sync-lock_sf_window_flavor-allocate
>
>
> zampins at kanary:~/Devel/petsc$ cat
> /home/zampins/local/etc/openmpi-mca-params.conf | grep btl
> btl = vader,tcp,self
> zampins at kanary:~/Devel/petsc$ make -f gmakefile.test
> vec_is_sf_tutorials-ex1_4
> Using MAKEFLAGS:
>         TEST arch-debug/tests/counts/vec_is_sf_tutorials-ex1_4.counts
>  ok vec_is_sf_tutorials-ex1_4+sf_window_sync-fence_sf_window_flavor-create
> not ok
> diff-vec_is_sf_tutorials-ex1_4+sf_window_sync-fence_sf_window_flavor-create
> # Error code: 1
> # 43,46c43,46
> # < [0] 0: 4001 2000 2002 3002 4002
> # < [1] 0: 1001 3000
> # < [2] 0: 2001 4000
> # < [3] 0: 3001 1000
> # ---
> # > [0] 0: 2002 2146435072 2 2146435072 38736240
> # > [1] 0: 3000 2146435072
> # > [2] 0: 2001 2146435072
> # > [3] 0: 3001 2146435072
>  ok vec_is_sf_tutorials-ex1_4+sf_window_sync-fence_sf_window_flavor-dynamic
> not ok
> diff-vec_is_sf_tutorials-ex1_4+sf_window_sync-fence_sf_window_flavor-dynamic
> # Error code: 1
> # 43,46c43,46
> # < [0] 0: 4001 2000 2002 3002 4002
> # < [1] 0: 1001 3000
> # < [2] 0: 2001 4000
> # < [3] 0: 3001 1000
> # ---
> # > [0] 0: 2002 2146435072 2 2146435072 0
> # > [1] 0: 3000 2146435072
> # > [2] 0: 2001 2146435072
> # > [3] 0: 3001 2146435072
>  ok
> vec_is_sf_tutorials-ex1_4+sf_window_sync-fence_sf_window_flavor-allocate
>  ok
> diff-vec_is_sf_tutorials-ex1_4+sf_window_sync-fence_sf_window_flavor-allocate
> # retrying
> vec_is_sf_tutorials-ex1_4+sf_window_sync-active_sf_window_flavor-create
> not ok
> vec_is_sf_tutorials-ex1_4+sf_window_sync-active_sf_window_flavor-create #
> Error code: 98
> # [1]PETSC ERROR: --------------------- Error Message
> --------------------------------------------------------------
> # [1]PETSC ERROR: General MPI error
> # [1]PETSC ERROR: MPI error 6 MPI_ERR_RANK: invalid rank
> # [1]PETSC ERROR: See https://petsc.org/release/faq/ for trouble shooting.
> # [1]PETSC ERROR: Petsc Development GIT revision: v3.15.4-783-g168bb9f76b
>  GIT Date: 2021-09-13 14:01:22 +0000
> # [1]PETSC ERROR: ../ex1 on a arch-debug named kanary.kaust.edu.sa by
> zampins Tue Sep 14 09:31:42 2021
> # [1]PETSC ERROR: [2]PETSC ERROR: --------------------- Error Message
> --------------------------------------------------------------
> # [2]PETSC ERROR: General MPI error
> # [2]PETSC ERROR: MPI error 6 MPI_ERR_RANK: invalid rank
> # [2]PETSC ERROR: See https://petsc.org/release/faq/ for trouble shooting.
> # [2]PETSC ERROR: Petsc Development GIT revision: v3.15.4-783-g168bb9f76b
>  GIT Date: 2021-09-13 14:01:22 +0000
> # [2]PETSC ERROR: ../ex1 on a arch-debug named kanary.kaust.edu.sa by
> zampins Tue Sep 14 09:31:42 2021
> # [2]PETSC ERROR: Configure options
> --with-cc=/home/zampins/local/bin/mpicc --with-cxx-dialect=c++14
> --with-cxx=/home/zampins/local/bin/mpicxx --with-debugging=1
> --with-fc=/home/zampins/local/bin/mpifort --with-fortran-bindings=0
> --with-hip-dir=/opt/rocm --with-hip=1
> --with-hypre-dir=/home/zampins/local-petsc
> --with-kokkos-dir=/home/zampins/local-petsc
> --with-kokkos-kernels-dir=/home/zampins/local-petsc
> --with-blaslapack-include=/home/zampins/local-aocl/aocc/3.0-6/include
> --with-blaslapack-lib="[/home/zampins/local-aocl/aocc/3.0-6/lib/liblapacke.a,/home/zampins/local-aocl/aocc/3.0-6/lib/libflame.a,/home/zampins/local-aocl/aocc/3.0-6/lib/libblis-mt.a]"
> HIPFLAGS=--amdgpu-target=gfx908
> HIPPPFLAGS=-I/home/zampins/local-petsc/include PETSC_ARCH=arch-debug
> # [2]PETSC ERROR: #1 PetscSFGetGroups() at
> /home/zampins/Devel/petsc/src/vec/is/sf/interface/sf.c:1166
> # [2]PETSC ERROR: #2 PetscSFSetUp_Window() at
> /home/zampins/Devel/petsc/src/vec/is/sf/impls/window/sfwindow.c:708
> # [2]PETSC ERROR: #3 PetscSFSetUp() at
> /home/zampins/Devel/petsc/src/vec/is/sf/interface/sf.c:318
> # [2]PETSC ERROR: #4 main() at
> /home/zampins/Devel/petsc/src/vec/is/sf/tutorials/ex1.c:172
> # [2]PETSC ERROR: PETSc Option Table entries:
> # [2]PETSC ERROR: -sf_type window
> # [2]PETSC ERROR: -sf_window_flavor create
> # [2]PETSC ERROR: -sf_window_sync active
> # [2]PETSC ERROR: -test_gather
> # [2]PETSC ERROR: ----------------End of Error Message -------send entire
> error message to petsc-maint at mcs.anl.gov----------
> # [3]PETSC ERROR: --------------------- Error Message
> --------------------------------------------------------------
> # [3]PETSC ERROR: General MPI error
> # [3]PETSC ERROR: MPI error 6 MPI_ERR_RANK: invalid rank
> # [3]PETSC ERROR: See https://petsc.org/release/faq/ for trouble shooting.
> # [3]PETSC ERROR: Petsc Development GIT revision: v3.15.4-783-g168bb9f76b
>  GIT Date: 2021-09-13 14:01:22 +0000
> # [3]PETSC ERROR: ../ex1 on a arch-debug named kanary.kaust.edu.sa by
> zampins Tue Sep 14 09:31:42 2021
> # [3]PETSC ERROR: Configure options
> --with-cc=/home/zampins/local/bin/mpicc --with-cxx-dialect=c++14
> --with-cxx=/home/zampins/local/bin/mpicxx --with-debugging=1
> --with-fc=/home/zampins/local/bin/mpifort --with-fortran-bindings=0
> --with-hip-dir=/opt/rocm --with-hip=1
> --with-hypre-dir=/home/zampins/local-petsc
> --with-kokkos-dir=/home/zampins/local-petsc
> --with-kokkos-kernels-dir=/home/zampins/local-petsc
> --with-blaslapack-include=/home/zampins/local-aocl/aocc/3.0-6/include
> --with-blaslapack-lib="[/home/zampins/local-aocl/aocc/3.0-6/lib/liblapacke.a,/home/zampins/local-aocl/aocc/3.0-6/lib/libflame.a,/home/zampins/local-aocl/aocc/3.0-6/lib/libblis-mt.a]"
> HIPFLAGS=--amdgpu-target=gfx908
> HIPPPFLAGS=-I/home/zampins/local-petsc/include PETSC_ARCH=arch-debug
> # [3]PETSC ERROR: #1 PetscSFGetGroups() at
> /home/zampins/Devel/petsc/src/vec/is/sf/interface/sf.c:1166
> # [3]PETSC ERROR: #2 PetscSFSetUp_Window() at
> /home/zampins/Devel/petsc/src/vec/is/sf/impls/window/sfwindow.c:708
> # [3]PETSC ERROR: #3 PetscSFSetUp() at
> /home/zampins/Devel/petsc/src/vec/is/sf/interface/sf.c:318
> # [3]PETSC ERROR: #4 main() at
> /home/zampins/Devel/petsc/src/vec/is/sf/tutorials/ex1.c:172
> # [3]PETSC ERROR: PETSc Option Table entries:
> # [3]PETSC ERROR: -sf_type window
> # [3]PETSC ERROR: -sf_window_flavor create
> # [3]PETSC ERROR: Configure options
> --with-cc=/home/zampins/local/bin/mpicc --with-cxx-dialect=c++14
> --with-cxx=/home/zampins/local/bin/mpicxx --with-debugging=1
> --with-fc=/home/zampins/local/bin/mpifort --with-fortran-bindings=0
> --with-hip-dir=/opt/rocm --with-hip=1
> --with-hypre-dir=/home/zampins/local-petsc
> --with-kokkos-dir=/home/zampins/local-petsc
> --with-kokkos-kernels-dir=/home/zampins/local-petsc
> --with-blaslapack-include=/home/zampins/local-aocl/aocc/3.0-6/include
> --with-blaslapack-lib="[/home/zampins/local-aocl/aocc/3.0-6/lib/liblapacke.a,/home/zampins/local-aocl/aocc/3.0-6/lib/libflame.a,/home/zampins/local-aocl/aocc/3.0-6/lib/libblis-mt.a]"
> HIPFLAGS=--amdgpu-target=gfx908
> HIPPPFLAGS=-I/home/zampins/local-petsc/include PETSC_ARCH=arch-debug
> # [1]PETSC ERROR: #1 PetscSFGetGroups() at
> /home/zampins/Devel/petsc/src/vec/is/sf/interface/sf.c:1166
> # [1]PETSC ERROR: #2 PetscSFSetUp_Window() at
> /home/zampins/Devel/petsc/src/vec/is/sf/impls/window/sfwindow.c:708
> # [1]PETSC ERROR: #3 PetscSFSetUp() at
> /home/zampins/Devel/petsc/src/vec/is/sf/interface/sf.c:318
> # [1]PETSC ERROR: #4 main() at
> /home/zampins/Devel/petsc/src/vec/is/sf/tutorials/ex1.c:172
> # [1]PETSC ERROR: PETSc Option Table entries:
> # [1]PETSC ERROR: -sf_type window
> # [1]PETSC ERROR: -sf_window_flavor create
> # [1]PETSC ERROR: -sf_window_sync active
> # [1]PETSC ERROR: -test_gather
> # [1]PETSC ERROR: ----------------End of Error Message -------send entire
> error message to petsc-maint at mcs.anl.gov----------
> # -sf_window_sync active
> # [3]PETSC ERROR: -test_gather
> # [3]PETSC ERROR: ----------------End of Error Message -------send entire
> error message to petsc-maint at mcs.anl.gov----------
> #
> --------------------------------------------------------------------------
> # MPI_ABORT was invoked on rank 2 in communicator MPI_COMM_WORLD
> # with errorcode 98.
> #
> # NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes.
> # You may or may not see output from other processes, depending on
> # exactly when Open MPI kills them.
> #
> --------------------------------------------------------------------------
> # [kanary.kaust.edu.sa:115527] 2 more processes have sent help message
> help-mpi-api.txt / mpi-abort
> # [kanary.kaust.edu.sa:115527] Set MCA parameter
> "orte_base_help_aggregate" to 0 to see all help / error messages
>  ok vec_is_sf_tutorials-ex1_4 # SKIP Command failed so no diff
> # retrying
> vec_is_sf_tutorials-ex1_4+sf_window_sync-active_sf_window_flavor-dynamic
> not ok
> vec_is_sf_tutorials-ex1_4+sf_window_sync-active_sf_window_flavor-dynamic #
> Error code: 98
> # [1]PETSC ERROR: --------------------- Error Message
> --------------------------------------------------------------
> # [1]PETSC ERROR: General MPI error
> # [1]PETSC ERROR: MPI error 6 MPI_ERR_RANK: invalid rank
> # [1]PETSC ERROR: See https://petsc.org/release/faq/ for trouble shooting.
> # [1]PETSC ERROR: Petsc Development GIT revision: v3.15.4-783-g168bb9f76b
>  GIT Date: 2021-09-13 14:01:22 +0000
> # [1]PETSC ERROR: ../ex1 on a arch-debug named kanary.kaust.edu.sa by
> zampins Tue Sep 14 09:31:45 2021
> # [1]PETSC ERROR: Configure options
> --with-cc=/home/zampins/local/bin/mpicc --with-cxx-dialect=c++14
> --with-cxx=/home/zampins/local/bin/mpicxx --with-debugging=1
> --with-fc=/home/zampins/local/bin/mpifort --with-fortran-bindings=0
> --with-hip-dir=/opt/rocm --with-hip=1
> --with-hypre-dir=/home/zampins/local-petsc
> --with-kokkos-dir=/home/zampins/local-petsc
> --with-kokkos-kernels-dir=/home/zampins/local-petsc
> --with-blaslapack-include=/home/zampins/local-aocl/aocc/3.0-6/include
> --with-blaslapack-lib="[/home/zampins/local-aocl/aocc/3.0-6/lib/liblapacke.a,/home/zampins/local-aocl/aocc/3.0-6/lib/libflame.a,/home/zampins/local-aocl/aocc/3.0-6/lib/libblis-mt.a]"
> HIPFLAGS=--amdgpu-target=gfx908
> HIPPPFLAGS=-I/home/zampins/local-petsc/include PETSC_ARCH=arch-debug
> # [1]PETSC ERROR: #1 PetscSFGetGroups() at
> /home/zampins/Devel/petsc/src/vec/is/sf/interface/sf.c:1166
> # [1]PETSC ERROR: #2 PetscSFSetUp_Window() at
> /home/zampins/Devel/petsc/src/vec/is/sf/impls/window/sfwindow.c:708
> # [1]PETSC ERROR: #3 PetscSFSetUp() at
> /home/zampins/Devel/petsc/src/vec/is/sf/interface/sf.c:318
> # [1]PETSC ERROR: #4 main() at
> /home/zampins/Devel/petsc/src/vec/is/sf/tutorials/ex1.c:172
> # [1]PETSC ERROR: PETSc Option Table entries:
> # [1]PETSC ERROR: -sf_type window
> # [1]PETSC ERROR: [2]PETSC ERROR: --------------------- Error Message
> --------------------------------------------------------------
> # [2]PETSC ERROR: General MPI error
> # [2]PETSC ERROR: MPI error 6 MPI_ERR_RANK: invalid rank
> # [2]PETSC ERROR: See https://petsc.org/release/faq/ for trouble shooting.
> # [2]PETSC ERROR: Petsc Development GIT revision: v3.15.4-783-g168bb9f76b
>  GIT Date: 2021-09-13 14:01:22 +0000
> # [2]PETSC ERROR: ../ex1 on a arch-debug named kanary.kaust.edu.sa by
> zampins Tue Sep 14 09:31:45 2021
> # [2]PETSC ERROR: Configure options
> --with-cc=/home/zampins/local/bin/mpicc --with-cxx-dialect=c++14
> --with-cxx=/home/zampins/local/bin/mpicxx --with-debugging=1
> --with-fc=/home/zampins/local/bin/mpifort --with-fortran-bindings=0
> --with-hip-dir=/opt/rocm --with-hip=1
> --with-hypre-dir=/home/zampins/local-petsc
> --with-kokkos-dir=/home/zampins/local-petsc
> --with-kokkos-kernels-dir=/home/zampins/local-petsc
> --with-blaslapack-include=/home/zampins/local-aocl/aocc/3.0-6/include
> --with-blaslapack-lib="[/home/zampins/local-aocl/aocc/3.0-6/lib/liblapacke.a,/home/zampins/local-aocl/aocc/3.0-6/lib/libflame.a,/home/zampins/local-aocl/aocc/3.0-6/lib/libblis-mt.a]"
> HIPFLAGS=--amdgpu-target=gfx908
> HIPPPFLAGS=-I/home/zampins/local-petsc/include PETSC_ARCH=arch-debug
> # [2]PETSC ERROR: #1 PetscSFGetGroups() at
> /home/zampins/Devel/petsc/src/vec/is/sf/interface/sf.c:1166
> # [2]PETSC ERROR: #2 PetscSFSetUp_Window() at
> /home/zampins/Devel/petsc/src/vec/is/sf/impls/window/sfwindow.c:708
> # [2]PETSC ERROR: #3 PetscSFSetUp() at
> /home/zampins/Devel/petsc/src/vec/is/sf/interface/sf.c:318
> # [2]PETSC ERROR: #4 main() at
> /home/zampins/Devel/petsc/src/vec/is/sf/tutorials/ex1.c:172
> # [2]PETSC ERROR: PETSc Option Table entries:
> # [2]PETSC ERROR: -sf_type window
> # [2]PETSC ERROR: -sf_window_flavor dynamic
> # [2]PETSC ERROR: -sf_window_sync active
> # [2]PETSC ERROR: -test_gather
> # [2]PETSC ERROR: ----------------End of Error Message -------send entire
> error message to petsc-maint at mcs.anl.gov----------
> # [3]PETSC ERROR: --------------------- Error Message
> --------------------------------------------------------------
> # [3]PETSC ERROR: General MPI error
> # [3]PETSC ERROR: MPI error 6 MPI_ERR_RANK: invalid rank
> # [3]PETSC ERROR: See https://petsc.org/release/faq/ for trouble shooting.
> # [3]PETSC ERROR: Petsc Development GIT revision: v3.15.4-783-g168bb9f76b
>  GIT Date: 2021-09-13 14:01:22 +0000
> # [3]PETSC ERROR: ../ex1 on a arch-debug named kanary.kaust.edu.sa by
> zampins Tue Sep 14 09:31:45 2021
> # [3]PETSC ERROR: Configure options
> --with-cc=/home/zampins/local/bin/mpicc --with-cxx-dialect=c++14
> --with-cxx=/home/zampins/local/bin/mpicxx --with-debugging=1
> --with-fc=/home/zampins/local/bin/mpifort --with-fortran-bindings=0
> --with-hip-dir=/opt/rocm --with-hip=1
> --with-hypre-dir=/home/zampins/local-petsc
> --with-kokkos-dir=/home/zampins/local-petsc
> --with-kokkos-kernels-dir=/home/zampins/local-petsc
> --with-blaslapack-include=/home/zampins/local-aocl/aocc/3.0-6/include
> --with-blaslapack-lib="[/home/zampins/local-aocl/aocc/3.0-6/lib/liblapacke.a,/home/zampins/local-aocl/aocc/3.0-6/lib/libflame.a,/home/zampins/local-aocl/aocc/3.0-6/lib/libblis-mt.a]"
> HIPFLAGS=--amdgpu-target=gfx908
> HIPPPFLAGS=-I/home/zampins/local-petsc/include PETSC_ARCH=arch-debug
> # [3]PETSC ERROR: #1 PetscSFGetGroups() at
> /home/zampins/Devel/petsc/src/vec/is/sf/interface/sf.c:1166
> # [3]PETSC ERROR: #2 PetscSFSetUp_Window() at
> /home/zampins/Devel/petsc/src/vec/is/sf/impls/window/sfwindow.c:708
> # [3]PETSC ERROR: #3 PetscSFSetUp() at
> /home/zampins/Devel/petsc/src/vec/is/sf/interface/sf.c:318
> # [3]PETSC ERROR: #4 main() at
> /home/zampins/Devel/petsc/src/vec/is/sf/tutorials/ex1.c:172
> # [3]PETSC ERROR: PETSc Option Table entries:
> # [3]PETSC ERROR: -sf_type window
> # [3]PETSC ERROR: -sf_window_flavor dynamic
> # [3]PETSC ERROR: -sf_window_sync active
> # [3]PETSC ERROR: -test_gather
> # [3]PETSC ERROR: ----------------End of Error Message -------send entire
> error message to petsc-maint at mcs.anl.gov----------
> # -sf_window_flavor dynamic
> # [1]PETSC ERROR: -sf_window_sync active
> # [1]PETSC ERROR: -test_gather
> # [1]PETSC ERROR: ----------------End of Error Message -------send entire
> error message to petsc-maint at mcs.anl.gov----------
> #
> --------------------------------------------------------------------------
> # MPI_ABORT was invoked on rank 3 in communicator MPI_COMM_WORLD
> # with errorcode 98.
> #
> # NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes.
> # You may or may not see output from other processes, depending on
> # exactly when Open MPI kills them.
> #
> --------------------------------------------------------------------------
> # [kanary.kaust.edu.sa:115572] 2 more processes have sent help message
> help-mpi-api.txt / mpi-abort
> # [kanary.kaust.edu.sa:115572] Set MCA parameter
> "orte_base_help_aggregate" to 0 to see all help / error messages
>  ok vec_is_sf_tutorials-ex1_4 # SKIP Command failed so no diff
>  ok
> vec_is_sf_tutorials-ex1_4+sf_window_sync-active_sf_window_flavor-allocate
>  ok
> diff-vec_is_sf_tutorials-ex1_4+sf_window_sync-active_sf_window_flavor-allocate
>  ok vec_is_sf_tutorials-ex1_4+sf_window_sync-lock_sf_window_flavor-create
> not ok
> diff-vec_is_sf_tutorials-ex1_4+sf_window_sync-lock_sf_window_flavor-create
> # Error code: 1
> # 43,46c43,46
> # < [0] 0: 4001 2000 2002 3002 4002
> # < [1] 0: 1001 3000
> # < [2] 0: 2001 4000
> # < [3] 0: 3001 1000
> # ---
> # > [0] 0: 4002 2146435072 2 2146435072 34619728
> # > [1] 0: 3000 2146435072
> # > [2] 0: 4000 2146435072
> # > [3] 0: 3001 2146435072
>  ok vec_is_sf_tutorials-ex1_4+sf_window_sync-lock_sf_window_flavor-dynamic
> not ok
> diff-vec_is_sf_tutorials-ex1_4+sf_window_sync-lock_sf_window_flavor-dynamic
> # Error code: 1
> # 43,46c43,46
> # < [0] 0: 4001 2000 2002 3002 4002
> # < [1] 0: 1001 3000
> # < [2] 0: 2001 4000
> # < [3] 0: 3001 1000
> # ---
> # > [0] 0: 4002 2146435072 2 2146435072 0
> # > [1] 0: 3000 2146435072
> # > [2] 0: 4000 2146435072
> # > [3] 0: 3001 2146435072
>  ok vec_is_sf_tutorials-ex1_4+sf_window_sync-lock_sf_window_flavor-allocate
>  ok
> diff-vec_is_sf_tutorials-ex1_4+sf_window_sync-lock_sf_window_flavor-allocate
>
>
>
> Il giorno mar 14 set 2021 alle ore 07:44 Stefano Zampini <
> stefano.zampini at gmail.com> ha scritto:
>
>> I'll see if I can reproduce
>>
>> Il Mar 14 Set 2021, 06:58 Junchao Zhang <junchao.zhang at gmail.com> ha
>> scritto:
>>
>>> Hi, Stefano,
>>>    Ping you again to see if you want to resolve this problem before
>>> petsc-3.16
>>>
>>> --Junchao Zhang
>>>
>>>
>>> On Sun, Sep 12, 2021 at 3:06 PM Antonio T. sagitter <
>>> sagitter at fedoraproject.org> wrote:
>>>
>>>> Unfortunately, it's not possible. I must use the OpenMPI provided by
>>>> Fedora build-system (these rpm builds of PETSc are for Fedora's
>>>> repositories), downloading external software is not permitted.
>>>>
>>>> On 9/12/21 21:10, Pierre Jolivet wrote:
>>>> >
>>>> >> On 12 Sep 2021, at 8:56 PM, Matthew Knepley <knepley at gmail.com
>>>> >> <mailto:knepley at gmail.com>> wrote:
>>>> >>
>>>> >> On Sun, Sep 12, 2021 at 2:49 PM Antonio T. sagitter
>>>> >> <sagitter at fedoraproject.org <mailto:sagitter at fedoraproject.org>>
>>>> wrote:
>>>> >>
>>>> >>     Those attached are configure.log/make.log from a MPI build in
>>>> >>     Fedora 34
>>>> >>     x86_64 where the error below occurred.
>>>> >>
>>>> >>
>>>> >> This is OpenMPI 4.1.0. Is that the only MPI you build? My first
>>>> >> inclination is that this is an MPI implementation bug.
>>>> >>
>>>> >> Junchao, do we have an OpenMPI build in the CI?
>>>> >
>>>> > config/examples/arch-ci-linux-cuda-double-64idx.py:
>>>> >   '--download-openmpi=1',
>>>> > config/examples/arch-ci-linux-pkgs-dbg-ftn-interfaces.py:
>>>> >   '--download-openmpi=1',
>>>> > config/examples/arch-ci-linux-pkgs-opt.py:  '--download-openmpi=1',
>>>> >
>>>> > config/BuildSystem/config/packages/OpenMPI.py uses version 4.1.0 as
>>>> well.
>>>> > I’m not sure PETSc is to blame here Antonio. You may want to try to
>>>> > ditch the OpenMPI shipped by your packet manager and try
>>>> > --download-openmpi as well, just for a quick sanity check.
>>>> >
>>>> > Thanks,
>>>> > Pierre
>>>> >
>>>>
>>>> --
>>>> ---
>>>> Antonio Trande
>>>> Fedora Project
>>>> mailto: sagitter at fedoraproject.org
>>>> GPG key: 0x29FBC85D7A51CC2F
>>>> GPG key server: https://keyserver1.pgp.com/
>>>>
>>>
>
> --
> Stefano
>


-- 
What most experimenters take for granted before they begin their
experiments is infinitely more interesting than any results to which their
experiments lead.
-- Norbert Wiener

https://www.cse.buffalo.edu/~knepley/ <http://www.cse.buffalo.edu/~knepley/>
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