[petsc-dev] Cannot locate file: share/petsc/datafiles/matrices/small

[Pierre Jolivet]

Could you please forward configure.log to petsc-maint at mcs.anl.gov <mailto:petsc-maint at mcs.anl.gov>?
It’ll help the SF people figure out if it’s a false positive or if something needs fixing.

Thanks,
Pierre

> On 12 Sep 2021, at 7:33 PM, Antonio T. sagitter <sagitter at fedoraproject.org> wrote:
> 
> On 9/12/21 19:29, Pierre Jolivet wrote:
>> In your configure.log, I see --with-mpi=0, so I’m surprised this is even running, and even more surprised that you are encountering OpenMPI errors.
>> Is this from a different build?
> 
> Yes, sorry. This is another build with MPI.
> 
>> Thanks,
>> Pierre
>>> On 12 Sep 2021, at 7:18 PM, Antonio T. sagitter <sagitter at fedoraproject.org> wrote:
>>> 
>>> Okay. I will try to set correctly the DATAFILESPATH options.
>>> 
>>> I see even this error:
>>> 
>>> not ok vec_is_sf_tutorials-ex1_4+sf_window_sync-fence_sf_window_flavor-create # Error code: 68
>>> 
>>> #	PetscSF Object: 4 MPI processes
>>> 
>>> #	  type: window
>>> 
>>> #	  [0] Number of roots=3, leaves=2, remote ranks=2
>>> 
>>> #	  [0] 0 <- (3,1)
>>> 
>>> #	  [0] 1 <- (1,0)
>>> 
>>> #	  [1] Number of roots=2, leaves=3, remote ranks=2
>>> 
>>> #	  [1] 0 <- (0,1)
>>> 
>>> #	  [1] 1 <- (2,0)
>>> 
>>> #	  [1] 2 <- (0,2)
>>> 
>>> #	  [2] Number of roots=2, leaves=3, remote ranks=3
>>> 
>>> #	  [2] 0 <- (1,1)
>>> 
>>> #	  [2] 1 <- (3,0)
>>> 
>>> #	  [2] 2 <- (0,2)
>>> 
>>> #	  [3] Number of roots=2, leaves=3, remote ranks=2
>>> 
>>> #	  [3] 0 <- (2,1)
>>> 
>>> #	  [3] 1 <- (0,0)
>>> 
>>> #	  [3] 2 <- (0,2)
>>> 
>>> #	  [0] Roots referenced by my leaves, by rank
>>> 
>>> #	  [0] 1: 1 edges
>>> 
>>> #	  [0]    1 <- 0
>>> 
>>> #	  [0] 3: 1 edges
>>> 
>>> #	  [0]    0 <- 1
>>> 
>>> #	  [1] Roots referenced by my leaves, by rank
>>> 
>>> #	  [1] 0: 2 edges
>>> 
>>> #	  [1]    0 <- 1
>>> 
>>> #	  [1]    2 <- 2
>>> 
>>> #	  [1] 2: 1 edges
>>> 
>>> #	  [1]    1 <- 0
>>> 
>>> #	  [2] Roots referenced by my leaves, by rank
>>> 
>>> #	  [2] 0: 1 edges
>>> 
>>> #	  [2]    2 <- 2
>>> 
>>> #	  [2] 1: 1 edges
>>> 
>>> #	  [2]    0 <- 1
>>> 
>>> #	  [2] 3: 1 edges
>>> 
>>> #	  [2]    1 <- 0
>>> 
>>> #	  [3] Roots referenced by my leaves, by rank
>>> 
>>> #	  [3] 0: 2 edges
>>> 
>>> #	  [3]    1 <- 0
>>> 
>>> #	  [3]    2 <- 2
>>> 
>>> #	  [3] 2: 1 edges
>>> 
>>> #	  [3]    0 <- 1
>>> 
>>> #	  current flavor=CREATE synchronization=FENCE MultiSF sort=rank-order
>>> 
>>> #	    current info=MPI_INFO_NULL
>>> 
>>> #	[buildhw-x86-09:1135574] *** An error occurred in MPI_Accumulate
>>> 
>>> #	[buildhw-x86-09:1135574] *** reported by process [3562602497,3]
>>> 
>>> #	[buildhw-x86-09:1135574] *** on win rdma window 4
>>> 
>>> #	[buildhw-x86-09:1135574] *** MPI_ERR_RMA_RANGE: invalid RMA address range
>>> 
>>> #	[buildhw-x86-09:1135574] *** MPI_ERRORS_ARE_FATAL (processes in this win will now abort,
>>> 
>>> #	[buildhw-x86-09:1135574] ***    and potentially your MPI job)
>>> 
>>> #	[buildhw-x86-09.iad2.fedoraproject.org:1135567] 3 more processes have sent help message help-mpi-errors.txt / mpi_errors_are_fatal
>>> 
>>> #	[buildhw-x86-09.iad2.fedoraproject.org:1135567] Set MCA parameter "orte_base_help_aggregate" to 0 to see all help / error messages
>>> 
>>> Looks like an error related to OpenMPI-4*:
>>> https://github.com/open-mpi/ompi/issues/6374
>>> 
>>> Thank you.
>>> 
>>> On 9/12/21 18:09, Pierre Jolivet wrote:
>>>> Hello,
>>>> Did you copy the files from https://gitlab.com/petsc/datafiles <https://gitlab.com/petsc/datafiles> before the make check?
>>>> cfd.1.10 is not part of https://gitlab.com/petsc/petsc <https://gitlab.com/petsc/petsc>, so you either need to copy the files from the datafiles repository, or remove the --DATAFILESPATH=/home/sagitter/rpmbuild/BUILD/petsc-3.15.4/petsc-3.15.4/share/petsc/datafiles configure option.
>>>> Thanks,
>>>> Pierre
>>>>> On 12 Sep 2021, at 6:02 PM, Antonio T. sagitter <sagitter at fedoraproject.org <mailto:sagitter at fedoraproject.org>> wrote:
>>>>> 
>>>>> Hi all.
>>>>> 
>>>>> This error is repeated when the tests are compiled in PETSc-3.15.4 compilation:
>>>>> https://paste.in/MhdNjf <https://paste.in/MhdNjf>
>>>>> 
>>>>> This happens in Fedora 34 x86_64 with gcc-11.2.1
>>>>> 
>>>>> make.log and configure.log are attached
>>>>> -- 
>>>>> ---
>>>>> Antonio Trande
>>>>> Fedora Project
>>>>> mailto: sagitter at fedoraproject.org
>>>>> GPG key: 0x29FBC85D7A51CC2F
>>>>> GPG key server: https://keyserver1.pgp.com/
>>>>> <make_configure.zip><OpenPGP_0x29FBC85D7A51CC2F.asc>
>>> 
>>> -- 
>>> ---
>>> Antonio Trande
>>> Fedora Project
>>> mailto: sagitter at fedoraproject.org
>>> GPG key: 0x29FBC85D7A51CC2F
>>> GPG key server: https://keyserver1.pgp.com/
> 
> -- 
> ---
> Antonio Trande
> Fedora Project
> mailto: sagitter at fedoraproject.org
> GPG key: 0x29FBC85D7A51CC2F
> GPG key server: https://keyserver1.pgp.com/

-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://lists.mcs.anl.gov/pipermail/petsc-dev/attachments/20210912/aaa90911/attachment-0001.html>