[petsc-dev] Cannot locate file: share/petsc/datafiles/matrices/small

[Antonio T. sagitter]

On 9/12/21 19:29, Pierre Jolivet wrote:
> In your configure.log, I see --with-mpi=0, so I’m surprised this is even running, and even more surprised that you are encountering OpenMPI errors.
> Is this from a different build?
> 

Yes, sorry. This is another build with MPI.

> Thanks,
> Pierre
> 
>> On 12 Sep 2021, at 7:18 PM, Antonio T. sagitter <sagitter at fedoraproject.org> wrote:
>>
>> Okay. I will try to set correctly the DATAFILESPATH options.
>>
>> I see even this error:
>>
>> not ok vec_is_sf_tutorials-ex1_4+sf_window_sync-fence_sf_window_flavor-create # Error code: 68
>>
>> #	PetscSF Object: 4 MPI processes
>>
>> #	  type: window
>>
>> #	  [0] Number of roots=3, leaves=2, remote ranks=2
>>
>> #	  [0] 0 <- (3,1)
>>
>> #	  [0] 1 <- (1,0)
>>
>> #	  [1] Number of roots=2, leaves=3, remote ranks=2
>>
>> #	  [1] 0 <- (0,1)
>>
>> #	  [1] 1 <- (2,0)
>>
>> #	  [1] 2 <- (0,2)
>>
>> #	  [2] Number of roots=2, leaves=3, remote ranks=3
>>
>> #	  [2] 0 <- (1,1)
>>
>> #	  [2] 1 <- (3,0)
>>
>> #	  [2] 2 <- (0,2)
>>
>> #	  [3] Number of roots=2, leaves=3, remote ranks=2
>>
>> #	  [3] 0 <- (2,1)
>>
>> #	  [3] 1 <- (0,0)
>>
>> #	  [3] 2 <- (0,2)
>>
>> #	  [0] Roots referenced by my leaves, by rank
>>
>> #	  [0] 1: 1 edges
>>
>> #	  [0]    1 <- 0
>>
>> #	  [0] 3: 1 edges
>>
>> #	  [0]    0 <- 1
>>
>> #	  [1] Roots referenced by my leaves, by rank
>>
>> #	  [1] 0: 2 edges
>>
>> #	  [1]    0 <- 1
>>
>> #	  [1]    2 <- 2
>>
>> #	  [1] 2: 1 edges
>>
>> #	  [1]    1 <- 0
>>
>> #	  [2] Roots referenced by my leaves, by rank
>>
>> #	  [2] 0: 1 edges
>>
>> #	  [2]    2 <- 2
>>
>> #	  [2] 1: 1 edges
>>
>> #	  [2]    0 <- 1
>>
>> #	  [2] 3: 1 edges
>>
>> #	  [2]    1 <- 0
>>
>> #	  [3] Roots referenced by my leaves, by rank
>>
>> #	  [3] 0: 2 edges
>>
>> #	  [3]    1 <- 0
>>
>> #	  [3]    2 <- 2
>>
>> #	  [3] 2: 1 edges
>>
>> #	  [3]    0 <- 1
>>
>> #	  current flavor=CREATE synchronization=FENCE MultiSF sort=rank-order
>>
>> #	    current info=MPI_INFO_NULL
>>
>> #	[buildhw-x86-09:1135574] *** An error occurred in MPI_Accumulate
>>
>> #	[buildhw-x86-09:1135574] *** reported by process [3562602497,3]
>>
>> #	[buildhw-x86-09:1135574] *** on win rdma window 4
>>
>> #	[buildhw-x86-09:1135574] *** MPI_ERR_RMA_RANGE: invalid RMA address range
>>
>> #	[buildhw-x86-09:1135574] *** MPI_ERRORS_ARE_FATAL (processes in this win will now abort,
>>
>> #	[buildhw-x86-09:1135574] ***    and potentially your MPI job)
>>
>> #	[buildhw-x86-09.iad2.fedoraproject.org:1135567] 3 more processes have sent help message help-mpi-errors.txt / mpi_errors_are_fatal
>>
>> #	[buildhw-x86-09.iad2.fedoraproject.org:1135567] Set MCA parameter "orte_base_help_aggregate" to 0 to see all help / error messages
>>
>> Looks like an error related to OpenMPI-4*:
>> https://github.com/open-mpi/ompi/issues/6374
>>
>> Thank you.
>>
>> On 9/12/21 18:09, Pierre Jolivet wrote:
>>> Hello,
>>> Did you copy the files from https://gitlab.com/petsc/datafiles <https://gitlab.com/petsc/datafiles> before the make check?
>>> cfd.1.10 is not part of https://gitlab.com/petsc/petsc <https://gitlab.com/petsc/petsc>, so you either need to copy the files from the datafiles repository, or remove the --DATAFILESPATH=/home/sagitter/rpmbuild/BUILD/petsc-3.15.4/petsc-3.15.4/share/petsc/datafiles configure option.
>>> Thanks,
>>> Pierre
>>>> On 12 Sep 2021, at 6:02 PM, Antonio T. sagitter <sagitter at fedoraproject.org <mailto:sagitter at fedoraproject.org>> wrote:
>>>>
>>>> Hi all.
>>>>
>>>> This error is repeated when the tests are compiled in PETSc-3.15.4 compilation:
>>>> https://paste.in/MhdNjf <https://paste.in/MhdNjf>
>>>>
>>>> This happens in Fedora 34 x86_64 with gcc-11.2.1
>>>>
>>>> make.log and configure.log are attached
>>>> -- 
>>>> ---
>>>> Antonio Trande
>>>> Fedora Project
>>>> mailto: sagitter at fedoraproject.org
>>>> GPG key: 0x29FBC85D7A51CC2F
>>>> GPG key server: https://keyserver1.pgp.com/
>>>> <make_configure.zip><OpenPGP_0x29FBC85D7A51CC2F.asc>
>>
>> -- 
>> ---
>> Antonio Trande
>> Fedora Project
>> mailto: sagitter at fedoraproject.org
>> GPG key: 0x29FBC85D7A51CC2F
>> GPG key server: https://keyserver1.pgp.com/
> 

-- 
---
Antonio Trande
Fedora Project
mailto: sagitter at fedoraproject.org
GPG key: 0x29FBC85D7A51CC2F
GPG key server: https://keyserver1.pgp.com/